EsuBft4437_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft4437_2a-0001
Unique NameEsuBft4437_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_347contigScaffold_347:69522..70062 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft4437_2
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft4437_2aEsuBft4437_2aEctocarpus subulatus male Bft15bgeneScaffold_347 69522..70062 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4437_2a-0001-exonEsuBft4437_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_347 69522..70062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4437_2a-0001-cdsEsuBft4437_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_347 69522..69722 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4437_2a-0001-exonagat-three_prime_utr-15983Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_347 69723..70062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft4437_2a-0001EsuBft4437_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_347 69522..69722 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft4437_2a-0001 ID=EsuBft4437_2a-0001|Name=EsuBft4437_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=541bp|location=Sequence derived from alignment at Scaffold_347:69522..70062+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCCTGTAAGAGGCTTAGCAACCTCCCCCTTGTCCGCGTCAGTCAC
GTTTTGTTCTATCGCGTTGTACAAAGCATCCTCCCAGTCCTCAATATCAT
CTCGTGGCACTTTGAGTTCATCACATAAATCGCCAATGTACGATTCTATG
GCGTCTATGAGCGATTCAAAGAAAGACAGGTCATTCAAGGCTTCAGCATA
GATATTCTGCTCTAAAACCAGCTTGTAGGTTTAGCACAGCTGCAGCGTTA
TCATCCTGAAGACATCCGGTATCTGTGGTAATCAAACATTTGGAACCATT
CTTGGCAACAACCGTGTACTTACTCCATTGGGGGTCTTTGCAAATACATC
TATGTTACCATGATTTACATCTCTCGCGACGTTGGTGGTGTTAAACATCA
TACATCTAGTCTAGGGTGTCACCATACTTAAAACAAGGGATAATACGTTG
TACAGCGTCACGGAATGCACGGTGTTGGCGGGGAATGTACGCTAGAATAT
TTGCCCGCATGAACATCCCACGGAGCCCCAAGGAGTCTGCA
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protein sequence of EsuBft4437_2a-0001

>EsuBft4437_2 ID=EsuBft4437_2|Name=EsuBft4437_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=66bp
MWPVRGLATSPLSASVTFCSIALYKASSQSSISSRGTLSSSHKSPMYDSM
ASMSDSKKDRSFKASA
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mRNA from alignment at Scaffold_347:69522..70062+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft4437_2a-0001 ID=EsuBft4437_2a-0001|Name=EsuBft4437_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=541bp|location=Sequence derived from alignment at Scaffold_347:69522..70062+ (Ectocarpus subulatus male Bft15b)
ATGTGGCCTGTAAGAGGCTTAGCAACCTCCCCCTTGTCCGCGTCAGTCAC
GTTTTGTTCTATCGCGTTGTACAAAGCATCCTCCCAGTCCTCAATATCAT
CTCGTGGCACTTTGAGTTCATCACATAAATCGCCAATGTACGATTCTATG
GCGTCTATGAGCGATTCAAAGAAAGACAGGTCATTCAAGGCTTCAGCATA
GATATTCTGCTCTAAAACCAGCTTGTAGGTTTAGCACAGCTGCAGCGTTA
TCATCCTGAAGACATCCGGTATCTGTGGTAATCAAACATTTGGAACCATT
CTTGGCAACAACCGTGTACTTACTCCATTGGGGGTCTTTGCAAATACATC
TATGTTACCATGATTTACATCTCTCGCGACGTTGGTGGTGTTAAACATCA
TACATCTAGTCTAGGGTGTCACCATACTTAAAACAAGGGATAATACGTTG
TACAGCGTCACGGAATGCACGGTGTTGGCGGGGAATGTACGCTAGAATAT
TTGCCCGCATGAACATCCCACGGAGCCCCAAGGAGTCTGCA
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Coding sequence (CDS) from alignment at Scaffold_347:69522..70062+

>EsuBft4437_2a-0001 ID=EsuBft4437_2a-0001|Name=EsuBft4437_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=201bp|location=Sequence derived from alignment at Scaffold_347:69522..70062+ (Ectocarpus subulatus male Bft15b)
ATGTGGCCTGTAAGAGGCTTAGCAACCTCCCCCTTGTCCGCGTCAGTCAC
GTTTTGTTCTATCGCGTTGTACAAAGCATCCTCCCAGTCCTCAATATCAT
CTCGTGGCACTTTGAGTTCATCACATAAATCGCCAATGTACGATTCTATG
GCGTCTATGAGCGATTCAAAGAAAGACAGGTCATTCAAGGCTTCAGCATA
G
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