EsuBft893_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft893_3a-0001
Unique NameEsuBft893_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_1228contigScaffold_1228:51320..56384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FPL8
ProteomeIdEsuBft893_3
Protein domainsIPR026983
Protein domainsCoil
Protein domainsPTHR10676
Protein domainsIPR004273
Ownerapollo_admin@sb-roscoff.fr
Notedynein heavy chain axonemal os:homo sapiens gn:dnah8 pe:1 sv:2 [Automatic annotation]
Nb exon10
Max annot lvl2759|Eukaryota
Length1251
Hectar predicted targeting categoryother localisation
Evalue9.57e-268
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K10408
KEGG Pathwayko05016,map05016
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Descriptiondynein light chain binding
COG categoryZ
BRITEko00000,ko00001,ko04812
Cross References
External references for this mRNA
DatabaseAccession
EC3.6.1.15
GO0007018
GO0003777
GO0030286
GO0005930
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft893_3aEsuBft893_3aEctocarpus subulatus male Bft15bgeneScaffold_1228 51320..56384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_3a-0001EsuBft893_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_1228 51320..56384 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_3a-0001-exonagat-exon-26457Ectocarpus subulatus male Bft15bexonScaffold_1228 51320..51394 +
EsuBft893_3a-0001-exonagat-exon-26461Ectocarpus subulatus male Bft15bexonScaffold_1228 52055..52152 +
EsuBft893_3a-0001-exonagat-exon-26460Ectocarpus subulatus male Bft15bexonScaffold_1228 52715..52868 +
EsuBft893_3a-0001-exonagat-exon-26459Ectocarpus subulatus male Bft15bexonScaffold_1228 53212..53373 +
EsuBft893_3a-0001-exonagat-exon-26458Ectocarpus subulatus male Bft15bexonScaffold_1228 53897..54028 +
EsuBft893_3a-0001-exonagat-exon-26463Ectocarpus subulatus male Bft15bexonScaffold_1228 54419..54590 +
EsuBft893_3a-0001-exonagat-exon-26464Ectocarpus subulatus male Bft15bexonScaffold_1228 54725..54732 +
EsuBft893_3a-0001-exonEsuBft893_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_1228 55095..55208 +
EsuBft893_3a-0001-exonagat-exon-26465Ectocarpus subulatus male Bft15bexonScaffold_1228 55650..55808 +
EsuBft893_3a-0001-exonagat-exon-26462Ectocarpus subulatus male Bft15bexonScaffold_1228 56208..56384 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft893_3a-0001-cdsEsuBft893_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_1228 51320..51394 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft893_3a-0001 ID=EsuBft893_3a-0001|Name=EsuBft893_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1251bp|location=Sequence derived from alignment at Scaffold_1228:51320..56384+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGGAGGTGCAGTATGGCGGGAAGATCACCGACGACCTCGACCG
GCGCATGTTCAAGACTTACACACAGGTGTGGCTCACCCCGAGCACGTGCG
CGGATAGCTTCACGTACAACCCGCCAAACCCGATCTTCCGCATCCCTCAA
GACTTCAAGTACACCATTCCGAGCTCCGAGCAACTGGGCACCTTCAAGGA
CTTCATCAAGACCTTCCCGGAGATCGACACTCCCGAGATCTTTGGCCTTC
ACCCGAACGCTGACCTCACCTTCCGAGTGAAGGAGGTCAACGCCCTCTTC
GCGACCTTGGGCAACACACAGCCAAAGGGGGGCGGGGGAGGCGGCGGAGC
CAGTCGCGAGGACGTGGTTTTCGAGAAGGCCGCCGAGCTCTTGGAGCGGT
TGCCGGTGGACTACATCGAGGATGACTACAAGGCAAAGCTGCAGAAGCTC
GGAGGGCTGGCGGTGCCTCTGAACATCTTCCTCTTCCAGGAGATCCAGCG
CTTGCAGAAGGTTATCGCGAAGGTCCGCTCTATCCTCACGCAGCTGCAGC
AGGCCATCAAGGGGGAGGTGGTCATGACAGAGGAGCTGCAGGAGACTCTT
TACGCTGTGTATGACGCTAAGGTTCCGAGATTATGGGCCTTCACCATCAC
CGGCGACGAATTTTCGTGGATCTTGCCAACCTTGGGCCTTTGGTTCAGCT
CCCTCATCACGAGGGACGAGCAGGACCGAACATGGCTCAACAACGGGCGC
CCGACTTGCTACTGGCTCACCGGTTTCTTTAACCCACAGGCAAAGGCGTG
GGGTATGCTTACGGCCATGAAGCAGGAGGTGACTCGCAAACACAAGGCAG
AGAAGTGGGCGTTAGACGACGTGGTCTACCACACCGAAGTCACCTCGTAT
GAGCGGATGGAGCAGGTCCGATCGCCCCCGGCGGAGGGAGTGTACATCCA
CGGCCTCTTCTTGGACGGCGCGGCATGGTCAAAGCAGGAGGGGGTCATGG
TGGAGTCAGAGCCAAAAAAGCTGTTCGTGTCGCTGCCTGTTTTGTTCGTT
AGTGCCAACACCAAGAGCGACCAGGTGAAGGTGAAGCGCGAGATGTTCGG
CGCCCAGGGACCTTTTGAGTGTCCGTGTTACAAGTACTCGGCCAGGACAG
ATCGCTACATCATCTTCATGGTCAACCTCAAGTGCACTATGGAGAAGAAT
CCGCAGTTCTGGACCCTCAGGGGAACCGCCCTCCTTTGCAACACTGACTG
A
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protein sequence of EsuBft893_3a-0001

>EsuBft893_3 ID=EsuBft893_3|Name=EsuBft893_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=416bp
MVSEVQYGGKITDDLDRRMFKTYTQVWLTPSTCADSFTYNPPNPIFRIPQ
DFKYTIPSSEQLGTFKDFIKTFPEIDTPEIFGLHPNADLTFRVKEVNALF
ATLGNTQPKGGGGGGGASREDVVFEKAAELLERLPVDYIEDDYKAKLQKL
GGLAVPLNIFLFQEIQRLQKVIAKVRSILTQLQQAIKGEVVMTEELQETL
YAVYDAKVPRLWAFTITGDEFSWILPTLGLWFSSLITRDEQDRTWLNNGR
PTCYWLTGFFNPQAKAWGMLTAMKQEVTRKHKAEKWALDDVVYHTEVTSY
ERMEQVRSPPAEGVYIHGLFLDGAAWSKQEGVMVESEPKKLFVSLPVLFV
SANTKSDQVKVKREMFGAQGPFECPCYKYSARTDRYIIFMVNLKCTMEKN
PQFWTLRGTALLCNTD
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mRNA from alignment at Scaffold_1228:51320..56384+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft893_3a-0001 ID=EsuBft893_3a-0001|Name=EsuBft893_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5065bp|location=Sequence derived from alignment at Scaffold_1228:51320..56384+ (Ectocarpus subulatus male Bft15b)
ATGGTGTCGGAGGTGCAGTATGGCGGGAAGATCACCGACGACCTCGACCG
GCGCATGTTCAAGACTTACACACAGGTAGGTGATAACATACACACAAATC
CCATGTAATGTAGTAGTTTTTTTGCGCCATCCTCGAGGTAAATTTGTTGA
GCAAGTATTCCTGTTTCATGTTTGTTCAACAAGTTCCGCCAAACCGAAGA
GATACCACCGTAGTTCTTTAACGGTTCTCGGACGGAAAAAGACCAGCACG
CAGAGAACAAAGTTCGAAGGACTTAGGGATTGAGTCTCTAATGTGCACCG
GGAGTATATCTATGAAATTCCGATCCTTAACGGAGGAACGTGTTCGCAAC
CCGTTCTCTTGGATAGGTTGTGTCAATGTACAGTACATACAAACTAAGCC
CGCGTGCGCCTACGTACGGCTCCAAACACGAACATTCTGAGGGCATTCGA
TGGAGGAATAACGCGCCTGCCCAGACTACCAAAGGCTGGATTGCAGCTTT
TCTCAGTTCTACTTGCTGCCCCGTGCGCACGCCATTTCTAGACGCGCTCT
CCTGTTCACACCAGCCTATCTACGTACCATGTGGCTTGTCAGGCAAGCGG
TTTTCTTCCGTATCACTCCGTTATCAGCGAGTACCTTCCACGTGTTTGCG
GTCGTTTTCCTGCCACATGCCCGGAGGGAACCGACCGGCCAAACCCACAA
GCATGCCCCTCGCGATGCCGTGGCGATGGCCGCAGGTGTGGCTCACCCCG
AGCACGTGCGCGGATAGCTTCACGTACAACCCGCCAAACCCGATCTTCCG
CATCCCTCAAGACTTCAAGTACACCATTCCGAGGTGAGAGTCGAAGGGGC
GAAGGAGCAACTCAATGATTCGTATTCCTGTTTGCGTTCGTCGAAAAGGC
GGACACGATTTTGCCAACATTGCAGCCCGCCTGCGTAGCACGGGTTCATC
TTCGATAGAGCGTGGGCCCCGGTGGTCAAAACACCGCCCGCTAGTTTTGG
TAGCCGCGAGTGCTCTCTGTCCCCGCCTGTTCGCCCGCCATACATCCCAC
ACTCGGCAAAAAGGGGAGAATGCTTGGCCACATGCTCGATTTCTTCAACC
CTCAGGAGAAGGTGCCAATGCTGAAGCACCGCCGATCCGAACATCATGCG
TTCGACTCGCCTAGATACGTTTATGCTGCTCTGATACTGAATCGTCTCGC
ACCGGTGAAGACTACGTAGCTTCGGAGACATCCCCAGCATTCGGAAAGCA
TCGTCAATTCTCGTCGGTTGGAGGGCCCGGGTATCGACACTTTGATTCCC
CCCCTTCCAGGTAGATCGACGTTTTAAGTTTCAAGCGCTAAGCCGTTGTC
ACTATCGTTGACATGATGATTTTTGTGCTACATCCTCTGCCGCAGCTCCG
AGCAACTGGGCACCTTCAAGGACTTCATCAAGACCTTCCCGGAGATCGAC
ACTCCCGAGATCTTTGGCCTTCACCCGAACGCTGACCTCACCTTCCGAGT
GAAGGAGGTCAACGCCCTCTTCGCGACCTTGGGCAACACACAGCCAAAGG
TGGGCAGTCAGGCAGGCGTCAGAGCATTGCCCTCCAGCCAACACGTGTCT
GTACAGTAAAAAATGCTGTCGTGTGCAATACAGTAGGCGCCCGCCACATA
GGAATCTCTAGTTTTCGGTGAGGCTGGGTTTCTTAGTTCCTAGGGCTATG
CTTCGAATGACCGCTATATCGATTGTAGAGATGTTGATTTGCTAGATTTT
GAGCTTTCCGAGGCAAGATCAATTTCGAAACTACAACTCCTTCAGTTACC
GGTGCCACGTCCTGATATGAAGCTCTGGAAAGCTTCCTGGATCCACCTAC
TACGCATTTTCTGCCCGTTTCGCGATCATCCTTGAATCAAAGGGGGGCGG
GGGAGGCGGCGGAGCCAGTCGCGAGGACGTGGTTTTCGAGAAGGCCGCCG
AGCTCTTGGAGCGGTTGCCGGTGGACTACATCGAGGATGACTACAAGGCA
AAGCTGCAGAAGCTCGGAGGGCTGGCGGTGCCTCTGAACATCTTCCTCTT
CCAGGTAATTCTTGTTCGGACTGCAAACCCGATGTTGTTGGGAGGGCTTC
TTTGCCTTACGTGCTCGCATGGCGATATACTGGCTAGTCCACAGCATAAT
ATTATTGAGACAGGGACTTTCATACCGACTTGCGCACATGAGCGGTGCGG
TCCTGCCGAGGAAGAAAGTTCGTGTGCATACAAGGTTTTGGGTGCAAGCC
GTTACAGTAATATATTGAGCCTTCTAGGTAGACAGTGGTACGAAGGTTGT
GCGAAAGGATGTGCTCTTTGTTCGACTGGGGTGAGACTGACGTAGGAGTA
CCATCAGGCTAGCACCCTGACTGTCCATGTAGTCTAATGGTTTGCCTGAT
CGAATAACTGTTGCTGATTGGTGGGCTGCTGCAAGAACTCTAGTCTTCCA
AGACACGACCATAGAGCTTGCACGGTCGTGGGTAGCTTGTCGATGCCCTG
TTTCCTCTCGGAAATAAGTAGTATCGCTGTTTCTCATGCGCGTTCGCTTT
CACGCGACACGCTCCTACGCCCAATAGGAGATCCAGCGCTTGCAGAAGGT
TATCGCGAAGGTCCGCTCTATCCTCACGCAGCTGCAGCAGGCCATCAAGG
GGGAGGTGGTCATGACAGAGGAGCTGCAGGAGACTCTTTACGCTGTGTAT
GACGCTAAGGTGGGCCGACAAGCGAAAGCTCTCTCGAAATGCGACTTTGT
TCTCACACGTAACCTCAGCCCAAAGAATCGGCCAAACGAGTATGGTTTGG
CATCAGGAACATGTTGCTCTATCTTTATTTTATTGAGGGCGGGGTGTCAA
ATATGTATAGGAGGCAACACAGCACGTCGACTTCTCCTGCTAACCCCCGT
CCCCCCTCGTCTCGGCCCGCTAACTTTCTTGCCAGAGTGCAACACGCCGT
ACAATCAGCTTGCACACAGTCACCACGCACCTTACGCCTTTTCCCAGTTA
TCACACTCCACCATACCCACTCATAACCTCAAACCCTCTCTCCTATCAAA
ACACTGCAATCCCTGGCCCCTAAATGAACGGCGCGGTGCGGCCCGACAGG
TTCCGAGATTATGGGCCTTCACCATCACCGGCGACGAATTTTCGTGGATC
TTGCCAACCTTGGGCCTTTGGTTCAGCTCCCTCATCACGAGGGACGAGCA
GGACCGAACATGGCTCAACAACGGGCGCCCGACTTGCTACTGGCTCACCG
GTTTCTTTAACCCACAGGCAAGTACAGTCTCGCTGTTTTTGTGGCCCTAC
GTTGTATGGCCTTGGAAATGGTGTGAACTACGTAGCACATCAGGATAGAT
AGGACAAGCGCGTTTACTCCAGTTGCTTAGCAAGCGAAACGCTTATTCGC
GGCAGAGGCGTGGGTAAATCTTGGGAAACGAAGAACCTCCTAAAACGGAG
GAACAATCGTCGTGCTGAACTGACTCTAACCGAACCGTGCCCATTGTACG
ATTACTTCCAACCTTTTCCCTGACACGCCTCCATCCAGCATGTCCATGTC
CCGTCCTCACCCATCCATGTCGTCGGGGTGATTGTCGTTGCCACGGGTCT
ACATGTAGCACCGTTGCCAACAACATGCTGCGCTGGCGAAGTAGGAGATT
AAATCGAACAACCACGAACACATGAGCTTTGAATCGATTCTCATCTGGTG
TTGAAGCTCGTCGTTGTTCTTTTTTTCGCTTCTTCCCTTGTCACGGCGGC
CGATTCTATTGCCGGCACGCCGCAGGGTATGCTTACGGCCATGAAGCAGG
AGGTGACTCGCAAACACAAGGCAGAGAAGTGGGCGTTAGACGACGTGGTC
TACCACACCGAAGTCACCTCGTATGAGCGGATGGAGCAGGTGTGAAAGCA
CGCGTGGGGTGGTTGTGGCCCCGGAGTTCGATATCCGTATGAAAGTGTTA
TCATTGGGAGAGGTGGAATCGCCACCACTATTGTACTATCCAATGCGAGG
GCGCGTGCGTTGTTCATCGAAAAAAAAACATCATGCGTGAATCAATGCGA
GTTCGAATGCGTGGCATGCCCCCAGTGCACCCAGTGGGTGCGATGAACAA
CTTACGTAGTGAGGCGCTTGGTTTCGGTGCCCCTCCATGTTTGCATGAGA
GCCTTGTTGGATATAGATACGACACTTGTGTATCCATGCCGAATTCGAAT
TGCTCTTCCCCGATGTCGGGATAGCAAGCCTTTTGCGTGGTTCAAGTCAG
GTAATAGTGCTGACGGTGCACATGAATGACTGCAAATGATAGGACCGTCG
TTGGCCACAACGTTTTGAACGGTCGCCCAGGTCCGATCGCCCCCGGCGGA
GGGAGTGTACATCCACGGCCTCTTCTTGGACGGCGCGGCATGGTCAAAGC
AGGAGGGGGTCATGGTGGAGTCAGAGCCAAAAAAGCTGTTCGTGTCGCTG
CCTGTTTTGTTCGTTAGTGCCAACACCAAGAGCGACCAGGTGTGTTTGCG
GGCGTGCTTACATTGCTGTGGTTGGTGATGTTTCCTCCACCCCACATTGG
GTTTGTTCGCATGCATACTATGGATGTGGAGTGAGCACTGGTCATTGCAT
CTGCCGTAGAGCACACCGCGCTGGCTGTAATTCCGCCGAGCCCAGACAAC
AAGGCGCATAGAGATATCCGATATATTTATAGATCTCTATATATATATCA
ATCGGAGACCTGCTTGAAGCGAAAATCCATGGAGGCAAGGGAGTTTGAGT
GAGCCAAGCGGCACCTGGCCAACGTTTGCCATGAACCTAGCACGAAGATA
CACGGAGAGACCTGCCCGTTCTGATTTGTGGCCGCATGACACTTCACCGG
ACTCGACACACGGTCGACTACTACTATTTACTCATCAGGTGAAGGTGAAG
CGCGAGATGTTCGGCGCCCAGGGACCTTTTGAGTGTCCGTGTTACAAGTA
CTCGGCCAGGACAGATCGCTACATCATCTTCATGGTCAACCTCAAGTGCA
CTATGGAGAAGAATCCGCAGTTCTGGACCCTCAGGGGAACCGCCCTCCTT
TGCAACACTGACTGA
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Coding sequence (CDS) from alignment at Scaffold_1228:51320..56384+

>EsuBft893_3a-0001 ID=EsuBft893_3a-0001|Name=EsuBft893_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1251bp|location=Sequence derived from alignment at Scaffold_1228:51320..56384+ (Ectocarpus subulatus male Bft15b)
ATGGTGTCGGAGGTGCAGTATGGCGGGAAGATCACCGACGACCTCGACCG
GCGCATGTTCAAGACTTACACACAGGTGTGGCTCACCCCGAGCACGTGCG
CGGATAGCTTCACGTACAACCCGCCAAACCCGATCTTCCGCATCCCTCAA
GACTTCAAGTACACCATTCCGAGCTCCGAGCAACTGGGCACCTTCAAGGA
CTTCATCAAGACCTTCCCGGAGATCGACACTCCCGAGATCTTTGGCCTTC
ACCCGAACGCTGACCTCACCTTCCGAGTGAAGGAGGTCAACGCCCTCTTC
GCGACCTTGGGCAACACACAGCCAAAGGGGGGCGGGGGAGGCGGCGGAGC
CAGTCGCGAGGACGTGGTTTTCGAGAAGGCCGCCGAGCTCTTGGAGCGGT
TGCCGGTGGACTACATCGAGGATGACTACAAGGCAAAGCTGCAGAAGCTC
GGAGGGCTGGCGGTGCCTCTGAACATCTTCCTCTTCCAGGAGATCCAGCG
CTTGCAGAAGGTTATCGCGAAGGTCCGCTCTATCCTCACGCAGCTGCAGC
AGGCCATCAAGGGGGAGGTGGTCATGACAGAGGAGCTGCAGGAGACTCTT
TACGCTGTGTATGACGCTAAGGTTCCGAGATTATGGGCCTTCACCATCAC
CGGCGACGAATTTTCGTGGATCTTGCCAACCTTGGGCCTTTGGTTCAGCT
CCCTCATCACGAGGGACGAGCAGGACCGAACATGGCTCAACAACGGGCGC
CCGACTTGCTACTGGCTCACCGGTTTCTTTAACCCACAGGCAAAGGCGTG
GGGTATGCTTACGGCCATGAAGCAGGAGGTGACTCGCAAACACAAGGCAG
AGAAGTGGGCGTTAGACGACGTGGTCTACCACACCGAAGTCACCTCGTAT
GAGCGGATGGAGCAGGTCCGATCGCCCCCGGCGGAGGGAGTGTACATCCA
CGGCCTCTTCTTGGACGGCGCGGCATGGTCAAAGCAGGAGGGGGTCATGG
TGGAGTCAGAGCCAAAAAAGCTGTTCGTGTCGCTGCCTGTTTTGTTCGTT
AGTGCCAACACCAAGAGCGACCAGGTGAAGGTGAAGCGCGAGATGTTCGG
CGCCCAGGGACCTTTTGAGTGTCCGTGTTACAAGTACTCGGCCAGGACAG
ATCGCTACATCATCTTCATGGTCAACCTCAAGTGCACTATGGAGAAGAAT
CCGCAGTTCTGGACCCTCAGGGGAACCGCCCTCCTTTGCAACACTGACTG
A
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