EsuBft108_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft108_22a-0001
Unique NameEsuBft108_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_345contigScaffold_345:223958..224703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G5L2
ProteomeIdEsuBft108_22
Protein domainsPTHR23274
Ownerapollo_admin@sb-roscoff.fr
Noteatp-dependent dna helicase pif1 os:xenopus laevis gn:pif1 pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length618
Hectar predicted targeting categoryother localisation
Evalue3.22e-37
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K15255
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Cross References
External references for this mRNA
DatabaseAccession
GO0005524
GO0032204
GO0051974
GO0000784
GO0042162
GO0043141
GO0006200
EC3.6.1
GO0033682
GO0032508
GO0000287
GO0017116
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft108_22aEsuBft108_22aEctocarpus subulatus male Bft15bgeneScaffold_345 223958..224703 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_22a-0001-exonEsuBft108_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_345 223958..223986 +
EsuBft108_22a-0001-exonagat-exon-105054Ectocarpus subulatus male Bft15bexonScaffold_345 224115..224703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_22a-0001-cdsEsuBft108_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_345 223958..223986 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_22a-0001-exonagat-three_prime_utr-855Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_345 224326..224703 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft108_22a-0001EsuBft108_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_345 223958..224325 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft108_22a-0001 ID=EsuBft108_22a-0001|Name=EsuBft108_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=618bp|location=Sequence derived from alignment at Scaffold_345:223958..224703+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCTTTGATCATGACGAACATCATGTCGCTCGACCGCGCCAGCGT
GTGCCTGTCTCGAGCCTTCGAGTACGGCCAGGCCTACGTGGCCCTCTCCA
GGGTCCGATCCCTAGAGGGCCTCTCGGTGGTCGGCACGATCGACCCCTCC
AAGATTAGGGCGCACCCACGGGTCGTGTCGTTCTACCGAGCCCTTAGCCG
TGAGAGAAAGGAGGCGTTACGGAGGAGGGGCGGGGGGTGAAATGTAATAT
AGATGTACAGCATAGGGCAATCGATCCTCCGTGGCCCCAGACTCTCTTCG
CTACACCGCGGAAGAAAGAGAGAGTTCAGAGTCAGAGAGAAGTCTTGTGT
CAATTCTTGGGGGAGCGAAGTTAGTCAATATTGAGAGAGAGAGAGAGAGC
GAGGTAGAGACAGAGGCAGAGACAGAGGCAAAAGAGATCCGGTGTGTCTT
GTCTGCTGGGTCGTCTCCTTTGTTCTGGCTTTGGCCGTCTTGGTCGTGTT
TATGTTTAGTTTTTTCTGGGTAGCCCTGCCGCGATGTAAATCGTACGTCC
ACGTCAGTTGGACCAGCCCGGACGGGCGTTAGAAGCATGGCACGGATGGT
GTGTGTGTGTGTGTGTGT
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protein sequence of EsuBft108_22a-0001

>EsuBft108_22 ID=EsuBft108_22|Name=EsuBft108_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=79bp
MASLIMTNIMSLDRASVCLSRAFEYGQAYVALSRVRSLEGLSVVGTIDPS
KIRAHPRVVSFYRALSRERKEALRRRGGG
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mRNA from alignment at Scaffold_345:223958..224703+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft108_22a-0001 ID=EsuBft108_22a-0001|Name=EsuBft108_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=746bp|location=Sequence derived from alignment at Scaffold_345:223958..224703+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTTTGATCATGACGAACATCATGTTTGTGTGCGTACCACAGGA
CGTCTTCCTCATTTTTCTTTCACATCTCAGTTGCTGCTGCTGCTGCTTGT
TTTATTTCCCGCTATTTTACCATTCGTTTTTTCGTTCCTCACGCCACCAC
CGGTCAGGTCGCTCGACCGCGCCAGCGTGTGCCTGTCTCGAGCCTTCGAG
TACGGCCAGGCCTACGTGGCCCTCTCCAGGGTCCGATCCCTAGAGGGCCT
CTCGGTGGTCGGCACGATCGACCCCTCCAAGATTAGGGCGCACCCACGGG
TCGTGTCGTTCTACCGAGCCCTTAGCCGTGAGAGAAAGGAGGCGTTACGG
AGGAGGGGCGGGGGGTGAAATGTAATATAGATGTACAGCATAGGGCAATC
GATCCTCCGTGGCCCCAGACTCTCTTCGCTACACCGCGGAAGAAAGAGAG
AGTTCAGAGTCAGAGAGAAGTCTTGTGTCAATTCTTGGGGGAGCGAAGTT
AGTCAATATTGAGAGAGAGAGAGAGAGCGAGGTAGAGACAGAGGCAGAGA
CAGAGGCAAAAGAGATCCGGTGTGTCTTGTCTGCTGGGTCGTCTCCTTTG
TTCTGGCTTTGGCCGTCTTGGTCGTGTTTATGTTTAGTTTTTTCTGGGTA
GCCCTGCCGCGATGTAAATCGTACGTCCACGTCAGTTGGACCAGCCCGGA
CGGGCGTTAGAAGCATGGCACGGATGGTGTGTGTGTGTGTGTGTGT
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Coding sequence (CDS) from alignment at Scaffold_345:223958..224703+

>EsuBft108_22a-0001 ID=EsuBft108_22a-0001|Name=EsuBft108_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=240bp|location=Sequence derived from alignment at Scaffold_345:223958..224703+ (Ectocarpus subulatus male Bft15b)
ATGGCCTCTTTGATCATGACGAACATCATGTCGCTCGACCGCGCCAGCGT
GTGCCTGTCTCGAGCCTTCGAGTACGGCCAGGCCTACGTGGCCCTCTCCA
GGGTCCGATCCCTAGAGGGCCTCTCGGTGGTCGGCACGATCGACCCCTCC
AAGATTAGGGCGCACCCACGGGTCGTGTCGTTCTACCGAGCCCTTAGCCG
TGAGAGAAAGGAGGCGTTACGGAGGAGGGGCGGGGGGTGA
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