Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 8081.XP_008403127.1 |
| ProteomeId | EsuBft2112_2 |
| Protein domains | IPR029526 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 33208|Metazoa |
| Length | 197 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.85e-14 |
| EggNOG OGs | 28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3CZSB@33213|Bilateria,48G9Q@7711|Chordata,49KX8@7742|Vertebrata,4A9HZ@7898|Actinopterygii |
| Date last modified | 2016-06-15 |
| Date creation | 2016-06-15 |
| Description | Transposase IS4 |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2112_2a-0001 ID=EsuBft2112_2a-0001|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1972bp|location=Sequence derived from alignment at Scaffold_344:297635..300956+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGCTAGGCGTCACGCGCGCACCGCACAATGGATGCGAAAGCACTGGAGC
GAGTCGGCCCACGACAACTACCCCATGGTGCAGGAGTGCATGCAGCGCGA
TTTGTTCGAGCTGCTGTACTCTCGGTTCCTCCCCTGCTCGGACCCCAACG
CCCCTCCACGGCAACTACCGACCGGAGAGGACAACCCGGAGTACGACTTG
AAGTGGCATATCAGGGACCTGGAGAAGATCCTAAACCGCGCGTGGTACGT
TGACTTGGGTCAGTGGATGTGCTACGACGAACAAATGGTGAAGACAGTAA
GCACGTTTTCGAAAGGACTCGCTCATTTCAACCCGGCGAAACCCATCACA
CACGGGATGAAGCAATATGCCGCGTCCGACAGGAACGGATACTGCTTGAT
CAACAGCATCGACGGGAGCTTCAAAGGTGATCCCTCCCTTGGACCCTTGG
AGGATTGCCCCCTCGGCAAAACCACGCGACACGTGCTTCACGTCCTGCTG
GAGGAGTGCGAGACGCTGCGAGGGAAGCTTGTCGGTTCCGGCGTCTTCAT
CGCAATGGCCAACTACTTCACCTCGCCCACCCTGTTCGCCTGCCTCGCGT
CACACGACATCTTCGCCGTGGCTACCTGTCGCAGCCCGCGGACGTGCGGC
GCTCTCCCGTACATGGAGAGCCTCGGGCATACGATTCCCAACCGGGGCGA
CATGACCTTCTGCCGCTCGGGTGAGATGGCGTTCGTGCAATGGAGAGACT
CGAAGGAGATTCTCCTTTACAGCACGGTCCACATCGGGGAGACGGGGGGA
GAAGGGGGCGGCATCAACCACTTCAAGCCTGTACTTCTAGCTCTGAAAGG
CAAAGGTCGGGCGGGGAAGCATAAGGAGCACGATCAGCCGGTGATGCGCA
TGGACTACGTGAAGTACATGGGGGGGGGTTGATAGGGCAGACCAGCATAA
CGAGTCGCACTACCACGACCATAAGTCCTCCACGAATCACTGGCGGTGCG
TTTTCGACGCGAAGATCATGCAGATGCTGACCAACAACTTTCTGTTGTTT
CGGATGTGGGTGCGGCTTTTGATGAGCGAGGTAGACATCTTGATGGACCC
ACACAACACCCCCTTTGAGGAGTTTCAAGAGTTGAAGGATGTAAAGAAGG
AGTTGGAGAGGCTGAGCAAGAGGGAGAGGGCTGATTGGGACGAAGAATTG
TCTGAGATTTTGATGAAGATATGCAACATGGGAACCATCAGGAAGGGCGG
GAAAGCCCCTCGGTCGTCGGAGAGACAACAGCCTACGGGGAAGGTTTGGG
GTAGCGTCCAGTTTAAGTCACAGCGGTTGTGCATGAACCCTGCATGCCCA
AAGCGAACGCTCAAAGGGTGCACATGCGAGGAGTTTTGCACTTTCGAGGG
TCAGACAGGAGTATTGATGTGCAAGACGTGCTTCCTCGACACGGACCGCC
ACGCGGCCGCCGCCGAAGCCCACTGGCATGGGGTCGATGTACTGCCGAGG
AGGTCACAGATGGAATGGGAGGGGGTTTCTTAGGCTGGGTTGGGCTCGGC
AAAGGGAGTATTGGGTGATCGTATGTCGCTTTGCGTGGGTGTCGCCTACA
AAGCCCCAGGACCACTTTTTTTTTGGGGGGGGGGGAGATAGGGACATGTG
GCAGGTGCACCCTGCTGTGCTTTTTTTTCTTTATTGTTTTTCCGGTTAGC
CCGCCGGTGCTTGTTGCGTTGGAGGAACGACGTTGTTCAGTGACGAGTTT
CTCTGTAGGGACAGTTTTGGACATACCGACTTGTGTCACCGGCATTGTTT
GGAGACGGGACCTCCCCGCCCCCGGTTAAAACCTTCGGCGCCATCATCAG
CAAACCCCGGCTAACAAACGTTCAGACCAAACACCATTTTTTTCATGGCT
TGGTTCATGCTCCAACGACGGTTCTTTGTGGATTTTATAACGCTCCAAGT
GTGAAACATCTGCAACTAGTCC back to topprotein sequence of EsuBft2112_2a-0001 >EsuBft2112_2 ID=EsuBft2112_2|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MRKHWSESAHDNYPMVQECMQRDLFELLYSRFLPCSDPNAPPRQLPTGED
NPEYDLKWHIRDLEKILNRAWYVDLGQWMCYDEQMVKTVSTFSKGLAHFN
PAKPITHGMKQYAASDRNGYCLINSIDGSFKGDPSLGPLEDCPLGKTTRH
VLHVLLEECETLRGKLVGSGVFIAMANYFTSPTLFACLASHDIFAVATCR
SPRTCGALPYMESLGHTIPNRGDMTFCRSGEMAFVQWRDSKEILLYSTVH
IGETGGEGGGINHFKPVLLALKGKGRAGKHKEHDQPVMRMDYVKYMGGG back to topmRNA from alignment at Scaffold_344:297635..300956+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2112_2a-0001 ID=EsuBft2112_2a-0001|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3322bp|location=Sequence derived from alignment at Scaffold_344:297635..300956+ (Ectocarpus subulatus male Bft15b)
GTGCTAGGCGTCACGCGCGCACCGCACAATGGATGCGAAAGCACTGGAGC
GAGTCGGCCCACGACAACTACCCCATGGTGCAGGAGTGCATGCAGCGCGA
TTTGTTCGAGCTGCTGTACTCTCGGTTCCTCCCCTGCTCGGACCCCAACG
CCCCTCCACGGCAACTACCGACCGGAGAGGACAACCCGGAGTACGACTTG
AAGTGGCATATCAGGTGAATCTATGCTTAGACTTGTCCGGATGCATTTGT
CCGATGTAGATAAGCTTGCCGTGCGTTTTTTTTTTTTTTCAAGCATGTTT
TTTTGCTGTAGTGGGGGCAACGACATCGTACGCTGGATCACCCCCTCCAC
ACGCCCGTTCTGTTTCTCCTTTTAGCAGTGTTTTCCTTTTTTTTGTCGAG
TAGCCGGGCGAACGGCATGCGTGCAGGATATTCTCCCATACAATCATCAC
AGCATGTTGGTGCTTGCATTTCATGCTCGCAAGTTCGAGATATAGGCTGG
ATGCGCGAATACGAAAAAGCGAACCGTCGGAAAACTTGTCGTTTACAATT
TTTTGTCGTCCTTGCTGCTAACGCAGGGACCTGGAGAAGATCCTAAACCG
CGCGTGGTACGTTGACTTGGGTCAGTGGATGTGCTACGACGAACAAATGG
TGAAGACAGTAAGCACGTTTTCGAAAGGACTCGCTCATTTCAACCCGGCG
AAACCCATCACACACGGTGAGAAAAACCCGTTTTGTTCAACTACGCCCCC
TGTGACCCCACAGCCACCCCCTGCAGACATGCATGAGATCCTGTTTTTTC
GTGGAATTAGCCCTGGTCAAAACCAACACCATGTTTTGTTGACGGAGGCG
TACCCCGCCTATCCGTCTGCACCCGATCTTTAGTGCAGATCGGGAGGTGT
CGAGGCCAGTTTTTTCATCGTACGTGTTCGGTGCTGTCAAGACGTAAGAC
GTGCAAGGTCGTCGACGAGCTCAGCCCCTGGCGTTTCGAAAGTCTGTCCG
CGATCTGCCGCATGTGTTATGCGTTCTGCTGTAGAACCTTTTGTGCGTTA
GTGATACTGTACACACGTACGCCGGGCGGAAGCTTCGTATGACGCCTTCG
TGCACAAGCCTCCAACTGGAATAACACCCCTCACTTTCTATGCTTCGTGT
TTTTCGGCTCTCGTTTGTTTGTNATCGGGAGGTGTCGAGGCCAGTTTTTT
CATCGTACGTGTTCGGTGCTGTCAAGACGTAAGACGTGCAAGGTCGTCGA
CGAGCTCAGCCCCTGGCGTTTCGAAAGTCTGTCCGCGATCTGCCGCATGT
GTTATGCGTTCTGCTGTAGAACCTTTTGTGCGTTAGTGATACTGTACACA
CGTACGCCGGGCGGAAGCTTCGTATGACGCCTTCGTGCACAAGCCTCCAA
CTGGAATAACACCCCTCACTTTCTATGCTTCGTGTTTTTCGGCTCTCGTT
TGTTTGTCCTTTTTTTGTTCCTTCGCGAGACAGGGATGAAGCAATATGCC
GCGTCCGACAGGAACGGATACTGCTTGATCAACAGCATCGACGGGAGCTT
CAAAGGTGATCCCTCCCTTGGACCCTTGGAGGATTGCCCCCTCGGCAAAA
CCACGCGACACGTGCTTCACGTCCTGCTGGAGGAGTGCGAGACGCTGCGA
GGGAAGCTTGTCGGTTCCGGCGTCTTCATCGCAATGGCCAACTACTTCAC
CTCGCCCACCCTGTTCGCCTGCCTCGCGTCACACGACATCTTCGCCGTGG
CTACCTGTCGCAGCCCGCGGACGTGCGGCGCTCTCCCGTACATGGAGAGC
CTCGGGCATACGATTCCCAACCGGGGCGACATGACCTTCTGCCGCTCGGG
TGAGATGGCGTTCGTGCAATGGAGAGACTCGAAGGAGATTCTCCTTTACA
GCACGGTCCACATCGGGGAGACGGGGGGAGAAGGGGGCGGCATCAACCAC
TTCAAGCCTGTACTTCTAGCGTGAGTTTCGGTTTTCTTTTGACCTTCGCG
TGGGTGTGAAGTGTGTGCATTGCCATTTGTTCGCGTCGAGAATGGGGAGG
GTTGGGATTGGCGTGCGACCGAGTTGAATTTTACTCCGAATCGGTCGTGA
AAGGTAGAACACGTCTTTGACAGGGCACACGGCGNGTCCCTTGCCCCCCC
CCCCGCCCTATTTCATTTCTTTTTGTTTCCGTCTTCTCAAGTCTGAAAGG
CAAAGGTCGGGCGGGGAAGCATAAGGAGCACGATCAGCCGGTGATGCGCA
TGGACTACGTGAAGTACATGGGGGGGGGTTGATAGGGCAGACCAGCATAA
CGAGTCGCACTACCACGACCATAAGTCCTCCACGAATCACTGGCGGTGCG
TTTTCGACGCGAAGATCATGCAGATGCTGACCAACAACTTTCTGTTGTTT
CGGATGTGGGTGCGGCTTTTGATGAGCGAGGTAGACATCTTGATGGACCC
ACACAACACCCCCTTTGAGGAGTTTCAAGAGTTGAAGGATGTAAAGAAGG
AGTTGGAGAGGCTGAGCAAGAGGGAGAGGGCTGATTGGGACGAAGAATTG
TCTGAGATTTTGATGAAGATATGCAACATGGGAACCATCAGGAAGGGCGG
GAAAGCCCCTCGGTCGTCGGAGAGACAACAGCCTACGGGGAAGGTTTGGG
GTAGCGTCCAGTTTAAGTCACAGCGGTTGTGCATGAACCCTGCATGCCCA
AAGCGAACGCTCAAAGGGTGCACATGCGAGGAGTTTTGCACTTTCGAGGG
TCAGACAGGAGTATTGATGTGCAAGACGTGCTTCCTCGACACGGACCGCC
ACGCGGCCGCCGCCGAAGCCCACTGGCATGGGGTCGATGTACTGCCGAGG
AGGTCACAGATGGAATGGGAGGGGGTTTCTTAGGCTGGGTTGGGCTCGGC
AAAGGGAGTATTGGGTGATCGTATGTCGCTTTGCGTGGGTGTCGCCTACA
AAGCCCCAGGACCACTTTTTTTTTGGGGGGGGGGGAGATAGGGACATGTG
GCAGGTGCACCCTGCTGTGCTTTTTTTTCTTTATTGTTTTTCCGGTTAGC
CCGCCGGTGCTTGTTGCGTTGGAGGAACGACGTTGTTCAGTGACGAGTTT
CTCTGTAGGGACAGTTTTGGACATACCGACTTGTGTCACCGGCATTGTTT
GGAGACGGGACCTCCCCGCCCCCGGTTAAAACCTTCGGCGCCATCATCAG
CAAACCCCGGCTAACAAACGTTCAGACCAAACACCATTTTTTTCATGGCT
TGGTTCATGCTCCAACGACGGTTCTTTGTGGATTTTATAACGCTCCAAGT
GTGAAACATCTGCAACTAGTCC back to topCoding sequence (CDS) from alignment at Scaffold_344:297635..300956+ >EsuBft2112_2a-0001 ID=EsuBft2112_2a-0001|Name=EsuBft2112_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_344:297635..300956+ (Ectocarpus subulatus male Bft15b)
ATGCGAAAGCACTGGAGCGAGTCGGCCCACGACAACTACCCCATGGTGCA
GGAGTGCATGCAGCGCGATTTGTTCGAGCTGCTGTACTCTCGGTTCCTCC
CCTGCTCGGACCCCAACGCCCCTCCACGGCAACTACCGACCGGAGAGGAC
AACCCGGAGTACGACTTGAAGTGGCATATCAGGGACCTGGAGAAGATCCT
AAACCGCGCGTGGTACGTTGACTTGGGTCAGTGGATGTGCTACGACGAAC
AAATGGTGAAGACAGTAAGCACGTTTTCGAAAGGACTCGCTCATTTCAAC
CCGGCGAAACCCATCACACACGGGATGAAGCAATATGCCGCGTCCGACAG
GAACGGATACTGCTTGATCAACAGCATCGACGGGAGCTTCAAAGGTGATC
CCTCCCTTGGACCCTTGGAGGATTGCCCCCTCGGCAAAACCACGCGACAC
GTGCTTCACGTCCTGCTGGAGGAGTGCGAGACGCTGCGAGGGAAGCTTGT
CGGTTCCGGCGTCTTCATCGCAATGGCCAACTACTTCACCTCGCCCACCC
TGTTCGCCTGCCTCGCGTCACACGACATCTTCGCCGTGGCTACCTGTCGC
AGCCCGCGGACGTGCGGCGCTCTCCCGTACATGGAGAGCCTCGGGCATAC
GATTCCCAACCGGGGCGACATGACCTTCTGCCGCTCGGGTGAGATGGCGT
TCGTGCAATGGAGAGACTCGAAGGAGATTCTCCTTTACAGCACGGTCCAC
ATCGGGGAGACGGGGGGAGAAGGGGGCGGCATCAACCACTTCAAGCCTGT
ACTTCTAGCTCTGAAAGGCAAAGGTCGGGCGGGGAAGCATAAGGAGCACG
ATCAGCCGGTGATGCGCATGGACTACGTGAAGTACATGGGGGGGGGTTGA back to top
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