EsuBft2112_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2112_5a-0001
Unique NameEsuBft2112_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:289818..290436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G722
ProteomeIdEsuBft2112_5
Protein domainsIPR011990
Protein domainsPTHR19959
Protein domainsSSF48452
Protein domainsPF13374
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length40
Hectar predicted targeting categoryother localisation
Evalue2.77e-50
EggNOG OGsCOG0457@1|root,KOG4658@1|root,KOG1840@2759|Eukaryota,KOG4658@2759|Eukaryota
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K10407
KEGG Pathwayko05132,map05132
DescriptionADP binding
COG categoryS
BRITEko00000,ko00001,ko03019,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_5aEsuBft2112_5aEctocarpus subulatus male Bft15bgeneScaffold_344 289818..290436 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_5a-0001-exonEsuBft2112_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 289818..289931 -
EsuBft2112_5a-0001-exonagat-exon-83800Ectocarpus subulatus male Bft15bexonScaffold_344 290150..290436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_5a-0001-cdsEsuBft2112_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 289818..289931 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_5a-0001-exonagat-five_prime_utr-5359Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 290414..290436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_5a-0001EsuBft2112_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 289818..290413 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2112_5a-0001 ID=EsuBft2112_5a-0001|Name=EsuBft2112_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=401bp|location=Sequence derived from alignment at Scaffold_344:289818..290436- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAAAATCGAGGCAGACGTGGAGATGGTGGAGAAGGCCACAACGCTTCAG
GCGCATTTCCTCGGAACACTAGACGTGCTAAAGGACTACGAAAACCCAGA
GCATGGTGCTGACAACCAAGGCTTGTTCGTTCTGGATGCCCTCTGGCGCT
CGGTGGAGAAGCTCTCGGGAGACTCGGAACTGGAAGTTGCCTCGTACAGC
ACCAGCCTCGGGGAGTTGGAGTCGTGCAAGGCGACCACGGATGTGGCTAG
TTCCTACTCGTTCGTCGGCTTTTTGTTCAACATCCAGGGCGAGTACACCC
AGGCTGAACCGCTCTACGAGAAGTCACAGGCCATCCAAGAGAAGTTCTTG
GGTCAGGAGCATTCAGATGTGGCTACGTCGCTCAACAACCGTGGTTGTTG
A
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protein sequence of EsuBft2112_5a-0001

>EsuBft2112_5 ID=EsuBft2112_5|Name=EsuBft2112_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGD
SELEVASYSTSLGELESCKATTDVASSYSFVGFLFNIQGEYTQAEPLYEK
SQAIQEKFLGQEHSDVATSLNNRGC
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mRNA from alignment at Scaffold_344:289818..290436-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2112_5a-0001 ID=EsuBft2112_5a-0001|Name=EsuBft2112_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=619bp|location=Sequence derived from alignment at Scaffold_344:289818..290436- (Ectocarpus subulatus male Bft15b)
TCAAAATCGAGGCAGACGTGGAGATGGTGGAGAAGGCCACAACGCTTCAG
GCGCATTTCCTCGGAACACTAGACGTGCTAAAGGACTACGAAAACCCAGA
GCATGGTGCTGACAACCAAGGCTTGTTCGTTCTGGATGCCCTCTGGCGCT
CGGTGGAGAAGCTCTCGGGAGACTCGGAACTGGAAGTTGCCTCGTACAGC
ACCAGCCTCGGGGAGTTGGAGTCGTGCAAGGCGACCACGGATGTGGCTAG
TTCCTACTCGTTCGTCGGCTTTTTGTTCAACATCCAGGTACGGCACTGTT
TGGGGATTCCGCAATGTTCGCTCCGTGTTCTTTGTGTGGCATTTAATGGT
GTAACGGCGCTGTACCAAATGCGGGTTTCTACCTACTCGGTCTGGTCAGC
TGTTTGTTCATTTTTTTGCTTTGATGTACGCATATATTTTTGTGCTTTTT
TCTTCTCGCTCTGGGTAAACCGCTGCCTTACAACAACCCATTGCTGTTTG
CACAGGGCGAGTACACCCAGGCTGAACCGCTCTACGAGAAGTCACAGGCC
ATCCAAGAGAAGTTCTTGGGTCAGGAGCATTCAGATGTGGCTACGTCGCT
CAACAACCGTGGTTGTTGA
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Coding sequence (CDS) from alignment at Scaffold_344:289818..290436-

>EsuBft2112_5a-0001 ID=EsuBft2112_5a-0001|Name=EsuBft2112_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_344:289818..290436- (Ectocarpus subulatus male Bft15b)
ATGGTGGAGAAGGCCACAACGCTTCAGGCGCATTTCCTCGGAACACTAGA
CGTGCTAAAGGACTACGAAAACCCAGAGCATGGTGCTGACAACCAAGGCT
TGTTCGTTCTGGATGCCCTCTGGCGCTCGGTGGAGAAGCTCTCGGGAGAC
TCGGAACTGGAAGTTGCCTCGTACAGCACCAGCCTCGGGGAGTTGGAGTC
GTGCAAGGCGACCACGGATGTGGCTAGTTCCTACTCGTTCGTCGGCTTTT
TGTTCAACATCCAGGGCGAGTACACCCAGGCTGAACCGCTCTACGAGAAG
TCACAGGCCATCCAAGAGAAGTTCTTGGGTCAGGAGCATTCAGATGTGGC
TACGTCGCTCAACAACCGTGGTTGTTGA
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