EsuBft2112_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2112_7a-0001
Unique NameEsuBft2112_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:279589..280643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7425.NV18849-PA
ProteomeIdEsuBft2112_7
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length963
Hectar predicted targeting categoryother localisation
Evalue1.39e-44
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,41ZUZ@6656|Arthropoda,3SKEY@50557|Insecta
Date last modified2016-06-15
Date creation2016-06-15
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_7aEsuBft2112_7aEctocarpus subulatus male Bft15bgeneScaffold_344 279589..280643 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_7a-0001-exonagat-exon-83802Ectocarpus subulatus male Bft15bexonScaffold_344 279589..280075 -
EsuBft2112_7a-0001-exonEsuBft2112_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 280168..280643 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_7a-0001-exonagat-three_prime_utr-8272Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 279589..279837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_7a-0001-cdsEsuBft2112_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 279838..280075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2112_7a-0001EsuBft2112_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 279838..280643 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2112_7a-0001 ID=EsuBft2112_7a-0001|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=963bp|location=Sequence derived from alignment at Scaffold_344:279589..280643- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAACGCTTCGATGTGAAATCAACTTCCCGCATCCCCGCTACCCC
TGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAGGAAGGAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGT
CCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGTCACGCCTACGCCCC
GGCGAAGCGGCACTGGGATGCCGTACAGAAGATCCTCGGCTACCTGAAAG
GGACAAGGGACCTCGGCATCATCTACCAACGGGGATCGGGGTTAGGGCTT
GCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGT
GTCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCA
AGACGCAGAGTATCGTGTCTTTGTCTTCAACGGAAGCCGAGTACATTGCT
GCCGGGGAGGGTGTCAAGGAGGCGTTCATCCAGGTCCTTGAGGACAACCA
GGGGGCCATAGCGTTGGTGCAGACCCCTCTCAGCTCAGGTCGCACGAAAC
ACATCGACGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAA
ATTTCGGTCAAGATTGTCCCGACAACGGAGCAACACGCGGACCTCCTCAC
CAAGGCCCTTAGCAGGGCCAGTCTGCAGTATCACCGGCGCAAGCTGAAGA
ATTTGCCGGAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGCCATGTT
TTCCATGCGGGGAAAGGCGCATAACTGTCGCGGTCTGTGTACCAATGGAA
GGAGCAGGGGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGC
GTTCTTGTCTTCGCCTTGGCCCTTCTAATAAGTGCGGCCGTTGTGATCCG
CTGTGATAGCGACGGGGCTTTTTGTGGTGGTAGGGTTTTTCCTTGAGGGG
TTTTGCCCGGACG
back to top

protein sequence of EsuBft2112_7a-0001

>EsuBft2112_7 ID=EsuBft2112_7|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSR
PDVSFAVRAVARHAYAPAKRHWDAVQKILGYLKGTRDLGIIYQRGSGLGL
AVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA
AGEGVKEAFIQVLEDNQGAIALVQTPLSSGRTKHIDVRFHFIRGLFRSGE
ISVKIVPTTEQHADLLTKALSRASLQYHRRKLKNLPE
back to top

mRNA from alignment at Scaffold_344:279589..280643-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2112_7a-0001 ID=EsuBft2112_7a-0001|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1055bp|location=Sequence derived from alignment at Scaffold_344:279589..280643- (Ectocarpus subulatus male Bft15b)
ATGGTTGAACGCTTCGATGTGAAATCAACTTCCCGCATCCCCGCTACCCC
TGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAGGAAGGAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGT
CCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGTCACGCCTACGCCCC
GGCGAAGCGGCACTGGGATGCCGTACAGAAGATCCTCGGCTACCTGAAAG
GGACAAGGGACCTCGGCATCATCTACCAACGGGGATCGGGGTTAGGGCTT
GCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGT
GTCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCA
AGACGCAGAGTATCGTGTCTTTGTCTTCAACGGAAGCCGAGTACATTGCT
GCCGGGGAGGGTGTCAAGGAGGCGTTGTTTGTGCGTGCTGTGCTTTCGTT
TGTCGCCCCAGAGACNTGTTTGTGCGTGCTGTGCTTTCATTTGTTGCCCC
AGACACCAGTGGTAGCAGCATCCAGGTCCTTGAGGACAACCAGGGGGCCA
TAGCGTTGGTGCAGACCCCTCTCAGCTCAGGTCGCACGAAACACATCGAC
GTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAAATTTCGGT
CAAGATTGTCCCGACAACGGAGCAACACGCGGACCTCCTCACCAAGGCCC
TTAGCAGGGCCAGTCTGCAGTATCACCGGCGCAAGCTGAAGAATTTGCCG
GAGTAGCTGTAGCAGTTTCTAGCACTTGGGAGAGGCCATGTTTTCCATGC
GGGGAAAGGCGCATAACTGTCGCGGTCTGTGTACCAATGGAAGGAGCAGG
GGGCGTTGGGAGACCATCGTCCGGGGGAACGTAGTTCCTCGCGTTCTTGT
CTTCGCCTTGGCCCTTCTAATAAGTGCGGCCGTTGTGATCCGCTGTGATA
GCGACGGGGCTTTTTGTGGTGGTAGGGTTTTTCCTTGAGGGGTTTTGCCC
GGACG
back to top

Coding sequence (CDS) from alignment at Scaffold_344:279589..280643-

>EsuBft2112_7a-0001 ID=EsuBft2112_7a-0001|Name=EsuBft2112_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_344:279589..280643- (Ectocarpus subulatus male Bft15b)
ATGGTTGAACGCTTCGATGTGAAATCAACTTCCCGCATCCCCGCTACCCC
TGGTGCCGATCTAGGGCCGAAGCGAGAGGATGAGGAAGGAGGGGAGTGGC
CGGTGAGGGAGGCCATCGGCAGCATGATGTGGGTGTCGACTTTCTCGCGT
CCAGACGTCTCGTTCGCCGTGCGTGCGGTAGCGCGTCACGCCTACGCCCC
GGCGAAGCGGCACTGGGATGCCGTACAGAAGATCCTCGGCTACCTGAAAG
GGACAAGGGACCTCGGCATCATCTACCAACGGGGATCGGGGTTAGGGCTT
GCCGTGTACGTAGACGCTAGCTACGCCGACACGGAGGATAGGCGTTCGGT
GTCAGGGTTGGCGACGACGGTTGGAGGTACCGTAGTCAGCCATGGTAGCA
AGACGCAGAGTATCGTGTCTTTGTCTTCAACGGAAGCCGAGTACATTGCT
GCCGGGGAGGGTGTCAAGGAGGCGTTCATCCAGGTCCTTGAGGACAACCA
GGGGGCCATAGCGTTGGTGCAGACCCCTCTCAGCTCAGGTCGCACGAAAC
ACATCGACGTGCGGTTTCATTTCATCCGCGGATTGTTTAGGTCGGGGGAA
ATTTCGGTCAAGATTGTCCCGACAACGGAGCAACACGCGGACCTCCTCAC
CAAGGCCCTTAGCAGGGCCAGTCTGCAGTATCACCGGCGCAAGCTGAAGA
ATTTGCCGGAGTAG
back to top