EsuBft103_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_23a-0001
Unique NameEsuBft103_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:214051..219365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G718
ProteomeIdEsuBft103_23
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Max annot lvl2759|Eukaryota
Length161
Hectar predicted targeting categoryother localisation
Evalue6.94e-148
EggNOG OGs2BKX4@1|root,2S1JI@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011410.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_23aEsuBft103_23aEctocarpus subulatus male Bft15bgeneScaffold_344 214051..219365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_23a-0001EsuBft103_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 214115..218437 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_23a-0001-exonagat-exon-416Ectocarpus subulatus male Bft15bexonScaffold_344 214051..214174 +
EsuBft103_23a-0001-exonagat-exon-418Ectocarpus subulatus male Bft15bexonScaffold_344 215261..215311 +
EsuBft103_23a-0001-exonagat-exon-414Ectocarpus subulatus male Bft15bexonScaffold_344 215699..215795 +
EsuBft103_23a-0001-exonagat-exon-417Ectocarpus subulatus male Bft15bexonScaffold_344 216419..216537 +
EsuBft103_23a-0001-exonagat-exon-415Ectocarpus subulatus male Bft15bexonScaffold_344 217235..217381 +
EsuBft103_23a-0001-exonEsuBft103_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 218288..219365 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_23a-0001-exonagat-five_prime_utr-239Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 214051..214114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_23a-0001-cdsEsuBft103_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 214115..214174 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_23a-0001-exonagat-three_prime_utr-387Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 218438..219365 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_23a-0001 ID=EsuBft103_23a-0001|Name=EsuBft103_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1616bp|location=Sequence derived from alignment at Scaffold_344:214051..219365+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCTTTCCTCTACTTGCCCGTGCACTTTCGCTGTCTCTCTCTCTCGCTC
ACAATCTACGAACCATGGCGAAGGCGGGCGAAGGGCTGTTCAAGAAATAC
ATTCCTAAGGACATCCATGAGAAAATTCGAAACGTCCTGGAGTTCAAGCC
CAAGGACCCCAACCGAGGATGGCAGGTACCTCCGGCGAACGCTGCTACCC
CAGGGCTAAACGCAAAGGAGTACCGCACGCCTGCACCCAACTCGCAGCCA
CAGGCGAACGTACCGGTGTCAGACAACCCCGACCTTCAGCACGACATCGG
GTACTTCAAGAGGGACACCAGGAGGGCGCCGCGACAGATACACTCTTACG
TGGCTCCTTCTCTCAGGATGCTCGCGGATGAACGGGTCAAGGCCCTCGAG
CTTATCTCGAATGAGCTAGGACCTGAAGACCCGGCGCCATCTCAGGGGAA
CAAGAACCCGGCCGTGCTCAAGTACGACCCCACAGGTCTTCGTAGCACCA
TGTCGGCGACCAACGAGGCCTGGGCGGAATCCGTCAAGAAGCACATGCCC
ACCCACAACGTGAAGCCGTGGTGGTGGCATTCCGATGTGGACCACGTGGC
CGAGGCACAGGCGAAGGGACTACCGCCCCCGCCGGGACGCCGCATGGACT
GGGAGGCACCGAAGAGCTCTAAGCTCGCCAGCTGGTAGAGAGAGAGAGAG
ATAGCTTGGACAGACGACGCCGGTTTCTTCCGTGTTTGTGTCTGTTTTTT
TGTCTCGACAAAAGTGTTCTTTGCTTGGTAGTGATTGGGTTGGTCGCCAT
GCGCCATCGTTGGGTGCCAGGGTCTGGTCTCGCGGCAGAGGAGAAGCGGC
TATTGTTTGCGGCGGAGGATATGGGTGGGTGGAAGGCTCCTTGGCACCAG
GTCGACTCTAGCTAGACGAGTCTCGGGGAGAGAGGGTTTCCTTGCATAAT
GCCGGTTCCTCTGGAAGTCGCTTTTGTTTCCCTTGATGCGTTGTAGCGGG
AGCCTTGTCCTTGATGCAAAAAGATTTCTGTCTCCATGCTCCATTTACTT
GTTTGTTTTTCTTGAGCTTGGATAGCTTTAAGCTGCTGGATAGCCAGGGC
AACGGAAGATCAACGGGGAGAAAAAAGAGGTTACGGCAGTAGCGGTAGTG
TTTTGTTTTCGGGGGGGGGGCTCTTGTAGACCGGCAAAGACACATTGATT
CTGTCACACATGCTTTTTTTACGCTGTTCCATGTGTTTGGGGCTTGATCG
CTGTGACGCGAAACTGTCGCGCCAAGGACAGGGCCAGCTCTAATCATATG
GTCATACGCAAACGTGATTCGATTCCATGTTATCATCCTGCTCGGGGTGT
GGTCCTGTTTGTCCGATCGGTATCATGTTCTTAAACGATCTCTCGATCGC
ACCGACCGGTAGGCCGTTCCCCATTTTGCTCCTTTTTTTTCTTTTCTGCT
TCTTTTTTTCGGCAAGCATCTGCTTGAAAAGTCCAATCTGCTCGTTGGTT
CTGCTCCTTTTCGTCCGTTATGCCCTCCGTTATGCTCGCTGTTTTGGGCC
ACTTTTGCTCTTTTCTGCTACTTTTCGGTGGATATGCCCTCTCGTAATGC
TTGTTTTTCCGTCAAC
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protein sequence of EsuBft103_23a-0001

>EsuBft103_23 ID=EsuBft103_23|Name=EsuBft103_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=207bp
MAKAGEGLFKKYIPKDIHEKIRNVLEFKPKDPNRGWQVPPANAATPGLNA
KEYRTPAPNSQPQANVPVSDNPDLQHDIGYFKRDTRRAPRQIHSYVAPSL
RMLADERVKALELISNELGPEDPAPSQGNKNPAVLKYDPTGLRSTMSATN
EAWAESVKKHMPTHNVKPWWWHSDVDHVAEAQAKGLPPPPGRRMDWEAPK
SSKLASW
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mRNA from alignment at Scaffold_344:214051..219365+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_23a-0001 ID=EsuBft103_23a-0001|Name=EsuBft103_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5315bp|location=Sequence derived from alignment at Scaffold_344:214051..219365+ (Ectocarpus subulatus male Bft15b)
CCTCTTTCCTCTACTTGCCCGTGCACTTTCGCTGTCTCTCTCTCTCGCTC
ACAATCTACGAACCATGGCGAAGGCGGGCGAAGGGCTGTTCAAGAAATAC
ATTCCTAAGGACATCCATGAGAAAGTGGGTTTGTTCGTGGGACCCCCCCT
TGTGATATTAGGAAAAAGAAATAGGACAGAAAGTCTATGTTGTTGTCGAT
GACGAGGTGCGGCGGAATCTTGTCAAATCAAGGAACGTCCCAACGACGCA
ACCCACCGTGCGCTGCTTGCGCGTTGCAGCCTTGACAAGTCAGCGTCACT
CGTTGTGCATGGGTTTCTGAAGACTTGACTCGAAGAGTTTACGCATGTAC
GATGAGAAACGAAGCCTAGGTCTATCTGTTCCTTGATGGATAAACAGGAA
GCTGGCATCCTTGTTCAGAGGAGACCTGAGTTTGGCTGCTGCTGTAACCC
TTTGTTTGTGAGAGAAGGGCGCCGGGAAGGATGAAAGCCATCCGGTGCTT
GATTGTCGGTACGACGCGGGCTGTTTTGTTGCAGTATGTGTTGCAAGGCT
ATCCGCTGCGGGTTTTGCCAACGTCGCTTATCTGGAGAAGCACGGAAAGT
CCGAAGAATGTCGACAATAGAGCAGCGTCCAGACGGAACTACCGATGTTT
ATGTTGTGCGGGTATGTGAAGGTACGTGTGAGCTAGGTCTCCTGTCGTGT
GCACTCCTTGGCTCGTTACAAGTGTTTGTTTGCTCTGTAAATTTGGATGC
CTCAGTCTACACTGTATGCAGCAGCACGCAAGTCAAGTTTGAGTTTGCTC
CAGACTCGACGTCGCCTACGTTAGTCTGGTTCATTGTGGTATATGACAAC
CATCCTTGTCAACTCCACGAGATTCATATGCCGCTAGCCTGCGTTTGTCT
GTCTTTGCCCTTCCTGTGACATGATCAAGACCACCTAATGCCAGTTCTCC
CGCAGGTGGACCTTCACAGATCGACCTTGGCCGCTATTGGGCCCTACATT
CAGCTGTGACTGGAGAGCAAAAAAAAAACTCGTCATTGTTTTCCAAGGTC
AAAGGGGGTGTTTCTACTTGCTGCCTCTCTCGCGTAAAGCGACATCATGA
CGACATACTTCGTGCATAGTTCACACGCGATCTCTCACCTTGGACTTTCC
TTGAACATGCTGCTGCTGCTGCTGCTGCTGTTCCCTGTTGCTGCCAAACC
TGGGTGTCAGATTCGAAACGTCCTGGAGTTCAAGCCCAAGGACCCCAACC
GAGGATGGCAGGTAAACTGTAAGCTCAAATCACTCATCCTACAACGAAGT
ATGCAAGGAAAAAAGGATAGGTAGCGCCCGCCCGCCAAGGTCTGGCGATC
GATATCTACAATATCTGGGAGATGTGCGGGCAGGAATCGGTGGACCTCTT
TCCCTCCGCCCATCACACTCCCACCACCATCTCCCTTCGTCGGCCCTTGG
TGCTGCACGGTATGTTCGCGCATGACTCGATTCTCCGTCCATCACATCCA
AACGCTTGAGATCCAGCAACGAAGACAAGAGGCCGGGAAAACCTTAGCTC
CAACGCACACCCTCTCACCCAGGGCCCTCCCCCTATAGCTGCGAACCCTT
CACCCGTCGCGCCCCACCGCCGCCCATGTTGATTTTTTTTGTTCGAAGGT
ACCTCCGGCGAACGCTGCTACCCCAGGGCTAAACGCAAAGGAGTACCGCA
CGCCTGCACCCAACTCGCAGCCACAGGCGAACGTACCGGTGTCAGGTGAA
CCACGCGGGAGTGTTTGTGTGTGGGGGGGGTTCCTCGGTTGCTTTCTTGC
GTGATAAGATCGTTGGCCTCGCATACCGCTGGAGCCTGCGATGGCGTCAA
GAGGCTGGGGAGGGGGGCATGGTCCGAAGACGTGCTTTCGAGAGGGGAGT
GTTTGTGTTCCAGAATTGATGAACCAGCATGAGTCTCTCGTGTGATGTAA
GTCATGTTTTTCGTGAGTGATGCCTGTCACGGCAGGCCTTGTCGGGGACT
CTTGAGGGTCTGGTGCTTCCGAATATGACTCAAAGGACTCCAAAGTGTTT
GGTTGGGTAATAGCACAAAGCACCAGTGCCCGAATTGCACGTGTTGTCGA
CGGTTCGGAACGTAGCTGTACACATGATTGTTGGAGCTTGGATGAGCGTG
GTGTATACCTTACCCGGCAAATGTGCTCGATCAACTCATTCCAGTATTGA
CCCTGCCATAGCGCTCGTTTACACACCCTTGCTTCTCACTGCCAATCATC
AACTGGTGTGACCCCTGGCCCCACGTTCTCGAATGTTCATCCGGTGTCTC
TCTCGCCGCCGTCCCGCTCTTGTTCACCCTCTTTCGACCGGGGGGGGGAT
GTGAATTGGGTCCTGCAGACAACCCCGACCTTCAGCACGACATCGGGTAC
TTCAAGAGGGACACCAGGAGGGCGCCGCGACAGATACACTCTTACGTGGC
TCCTTCTCTCAGGATGCTCGCGGATGAACGGGTCAAGGTGGGTGCATATC
GTATGCATGCGTGTGATGTTGGGAGGGGGAGTGAATGAAGGAATTGTACC
GGAAGATAGCGGAAACAAGCGCGCGGGTTGGGGACCCCACCTGACTGGCG
GTGCTCTCGTGGTGTCCGTCTCTCTGCCAGTGCTGGTGACCACGTTTCTT
TCAATACTCTGGTTCTACCTCTCTTGTCCCTCTCGTTTTACTAGATGAGC
AAAAATTAACGAGCGAACACTTGGGGTGCTGCGATATTCGCCCATCGGTG
CGTGTTCGCCTGCCCGCCGCACCCTTGGTTCCACGAATATGTACGACAAG
TAACACCGGTTTCAACCTGCCTCCACAGACTCAAGCAGGGGCGTGCTCTC
CGAGCGAGAAATCGGCATGACAAGTCGTTTCTCTCACTTCGACCAAATCG
CTCAGTGGGTTATGAACCCCCTTTTCATCAACTGCATGGGGTGGCAATTT
ACGACGCGAGGAAGGGTCTGTCGGACCAGGGCGTGTCGGAAAGGAGGACA
CTCTCGCAAGTTGCGGGGAACGGAAGCACTATCGCCCTCGCCGCCATATG
TGCGCTAGTGCTGCATTCTGCTGCTTCTTTTCGACAAGTTCTTTGGGCTT
TCCCGTTTCGTCTATACAAGTCTAGATGCAAGATGAATTCATCGCTAGCC
TTACATCCAAGTCTTGTTGTTTTGTTTTTCACAGGCCCTCGAGCTTATCT
CGAATGAGCTAGGACCTGAAGACCCGGCGCCATCTCAGGGGAACAAGAAC
CCGGCCGTGCTCAAGTACGACCCCACAGGTCTTCGTAGCACCATGTCGGC
GACCAACGAGGCCTGGGCGGAATCCGTCAAGGTTCGTGTGTGTTTCGCGT
TTGGTGGTGTGGGTGTCGTGTGAGCTTATCCATCGATCTGTGGTATGTGT
ATGTCTTCCTGTGGAAGTTACCCGTCACGTGGGTCTTACCGTTAATATGG
GTCTTCCCCCATGTCCGTCGATGAAGATTCTCTCCTCTTCTTTTTGCACA
TTGGCGTCGCGGTGAGAGGTGGGAGATTGTGGTGAAAGAGAATGCGGGTT
CCAATCCCGCCACCCACGAAAAGTAGTGGTGGTTAACACCAAACACTATT
ATGTATATAGTATGTGGAGGAATAACGAACAACGGAAACAGAGAGTGTGT
TGAAGTTGTGGAAATTTTGGTGACGTGGTGGACGTAGCGCACCCGCGAGA
GTACGCGCAGGAGGTCGCGAAGCAGGGAATCGACTCTCCGTTTACCCTCT
TATAGCCTTCGTGTCTGGCAAACAAGTCATTTAACACTGAGGGGGAGGTG
ACGATTAGAATCGTATCCCATTTCTCCATCGTCCGTCGAAGATAATTACC
TCCCTTCACACTTAGCATCTTGGGCGAGCTGTTGTTGTTACTGCTGGTGA
TGTTTGGTATCGTGTCTGTTGCTTCTTACACTCAAGCACATGATGTCGCC
CTTGGTCACGAAAGTGCTTGAGCCCTCTGGATTGTGTTGAACGTGCGGGT
AGTACAAAAATCGCGTGTGGGCGAAAAGTATTGCAGGCACGCCATTCTTC
GTGCTCTCAAATCCCGTCGTTCTTACCCTCAAGACACAACCTACCTGTTG
CTTTCACGAAGGCGTCAAATGCAGTCGCCCGTTAAACCAGACGCACACAA
CCCCCCCCCCCGATCCCAACCATATTTTTCATTTTTCCGAAACGCCTGTT
CATTCTCTCTCTTCCCTCCCCTCGTTCGCCTCACCAGAAGCACATGCCCA
CCCACAACGTGAAGCCGTGGTGGTGGCATTCCGATGTGGACCACGTGGCC
GAGGCACAGGCGAAGGGACTACCGCCCCCGCCGGGACGCCGCATGGACTG
GGAGGCACCGAAGAGCTCTAAGCTCGCCAGCTGGTAGAGAGAGAGAGAGA
TAGCTTGGACAGACGACGCCGGTTTCTTCCGTGTTTGTGTCTGTTTTTTT
GTCTCGACAAAAGTGTTCTTTGCTTGGTAGTGATTGGGTTGGTCGCCATG
CGCCATCGTTGGGTGCCAGGGTCTGGTCTCGCGGCAGAGGAGAAGCGGCT
ATTGTTTGCGGCGGAGGATATGGGTGGGTGGAAGGCTCCTTGGCACCAGG
TCGACTCTAGCTAGACGAGTCTCGGGGAGAGAGGGTTTCCTTGCATAATG
CCGGTTCCTCTGGAAGTCGCTTTTGTTTCCCTTGATGCGTTGTAGCGGGA
GCCTTGTCCTTGATGCAAAAAGATTTCTGTCTCCATGCTCCATTTACTTG
TTTGTTTTTCTTGAGCTTGGATAGCTTTAAGCTGCTGGATAGCCAGGGCA
ACGGAAGATCAACGGGGAGAAAAAAGAGGTTACGGCAGTAGCGGTAGTGT
TTTGTTTTCGGGGGGGGGGCTCTTGTAGACCGGCAAAGACACATTGATTC
TGTCACACATGCTTTTTTTACGCTGTTCCATGTGTTTGGGGCTTGATCGC
TGTGACGCGAAACTGTCGCGCCAAGGACAGGGCCAGCTCTAATCATATGG
TCATACGCAAACGTGATTCGATTCCATGTTATCATCCTGCTCGGGGTGTG
GTCCTGTTTGTCCGATCGGTATCATGTTCTTAAACGATCTCTCGATCGCA
CCGACCGGTAGGCCGTTCCCCATTTTGCTCCTTTTTTTTCTTTTCTGCTT
CTTTTTTTCGGCAAGCATCTGCTTGAAAAGTCCAATCTGCTCGTTGGTTC
TGCTCCTTTTCGTCCGTTATGCCCTCCGTTATGCTCGCTGTTTTGGGCCA
CTTTTGCTCTTTTCTGCTACTTTTCGGTGGATATGCCCTCTCGTAATGCT
TGTTTTTCCGTCAAC
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Coding sequence (CDS) from alignment at Scaffold_344:214051..219365+

>EsuBft103_23a-0001 ID=EsuBft103_23a-0001|Name=EsuBft103_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_344:214051..219365+ (Ectocarpus subulatus male Bft15b)
ATGGCGAAGGCGGGCGAAGGGCTGTTCAAGAAATACATTCCTAAGGACAT
CCATGAGAAAATTCGAAACGTCCTGGAGTTCAAGCCCAAGGACCCCAACC
GAGGATGGCAGGTACCTCCGGCGAACGCTGCTACCCCAGGGCTAAACGCA
AAGGAGTACCGCACGCCTGCACCCAACTCGCAGCCACAGGCGAACGTACC
GGTGTCAGACAACCCCGACCTTCAGCACGACATCGGGTACTTCAAGAGGG
ACACCAGGAGGGCGCCGCGACAGATACACTCTTACGTGGCTCCTTCTCTC
AGGATGCTCGCGGATGAACGGGTCAAGGCCCTCGAGCTTATCTCGAATGA
GCTAGGACCTGAAGACCCGGCGCCATCTCAGGGGAACAAGAACCCGGCCG
TGCTCAAGTACGACCCCACAGGTCTTCGTAGCACCATGTCGGCGACCAAC
GAGGCCTGGGCGGAATCCGTCAAGAAGCACATGCCCACCCACAACGTGAA
GCCGTGGTGGTGGCATTCCGATGTGGACCACGTGGCCGAGGCACAGGCGA
AGGGACTACCGCCCCCGCCGGGACGCCGCATGGACTGGGAGGCACCGAAG
AGCTCTAAGCTCGCCAGCTGGTAG
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