EsuBft103_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_20a-0001
Unique NameEsuBft103_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:189655..191855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_20
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length103
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_20aEsuBft103_20aEctocarpus subulatus male Bft15bgeneScaffold_344 189655..191855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_20a-0001EsuBft103_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 189990..191321 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_20a-0001-exonagat-exon-399Ectocarpus subulatus male Bft15bexonScaffold_344 189655..190445 -
EsuBft103_20a-0001-exonEsuBft103_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 191304..191415 -
EsuBft103_20a-0001-exonagat-exon-398Ectocarpus subulatus male Bft15bexonScaffold_344 191721..191855 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_20a-0001-exonagat-three_prime_utr-383Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 189655..189989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_20a-0001-cdsEsuBft103_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 189990..190445 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_20a-0001-exonagat-five_prime_utr-234Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 191322..191415 -
EsuBft103_20a-0001-exonagat-five_prime_utr-235Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 191721..191855 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_20a-0001 ID=EsuBft103_20a-0001|Name=EsuBft103_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_344:189655..191855- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGAACGAAAATTTGAGGCTCGGTGGGGTGCGCGCTGGCAACCCCAAATC
ACACGACGGCAGCACTGCACCCGGAGTGCCCAAGATGTGGGAGGCGCTTC
AATCGCTCGACTATGACGATCCAGCGAAAAAATGAGCGGAGGGAAGAATG
GACGTTCGAGGAAGGGTCGCGGAACGGAGAGCTGGACTAGGTCCGCGCCC
GCGAGAAGGTTGAAGGCTGGTGGACGGATATGCGTGCGGAGTTCAGGATC
GCCAACAAGAACAAAGAGAAGAGTGGGAACAACGCTGAACACCACTGGTC
CTTCTGTAACCAGAGGCTGTACGTCCTGCTCATGATGGACTGGTACGAGC
TGAGGGGAGGCGACAGCGCCAACGAGCACTGCGCAAGGTACTTCAGCGTG
AGGCTCAGCGAGGAGGATGGGGAAGCTTTCAACACTCTGTCCATGGAAGA
CGAGCAGTCGTCCAGCGATTCGGATGAACCGCCCGCTCCGAAGGGGAAGC
CGCGAGAGCGGAAGGCGAGGGAGAAGGGGAAGGTAAAACCGGAAGAAACC
TTGGTCCAACTTGTGGACGCATTCAAGACCACACCGAACAGCGTGGCAGC
GGCGATGTACAAGATTGCGGACAACGACGCCGGGAATCCCGTGGATATGT
TGATTGCTGCCTGCGATCGCGTTGATGACTTGGGAGAGAAGTTGGGAAAA
TGAGAAAGCAGCAGAAGCGCCCAAAACAAAAATTGAAAGGATCACTCAAA
ACCTCGCAGTTTTAAAGCGCGGGAGGCGTACGAAAAAATCTACAAAAAGA
CCAGGCCTGCTGCAGAGAAAGCGGCGGAGGAAGGAAGAAGAAGAGGAAGA
GAGTGAGGTTTCGTAGCGAGTTCTCGTGAAGGCCCTCCGGACAAACCAAA
CCCGACCTCTTCCAACGACGCATGAAGAGGATGCCTTGTCGTTTTGGGTT
TGATTCACACGGCATAGGTTGGGTACATGCATTGTTTTTAGTATGGCTAG
TTTTTTTTCCGTTGTGTGCAGCACGAAGGTAGGGCACT
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protein sequence of EsuBft103_20a-0001

>EsuBft103_20 ID=EsuBft103_20|Name=EsuBft103_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=157bp
MRAEFRIANKNKEKSGNNAEHHWSFCNQRLYVLLMMDWYELRGGDSANEH
CARYFSVRLSEEDGEAFNTLSMEDEQSSSDSDEPPAPKGKPRERKAREKG
KVKPEETLVQLVDAFKTTPNSVAAAMYKIADNDAGNPVDMLIAACDRVDD
LGEKLGK
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mRNA from alignment at Scaffold_344:189655..191855-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_20a-0001 ID=EsuBft103_20a-0001|Name=EsuBft103_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2201bp|location=Sequence derived from alignment at Scaffold_344:189655..191855- (Ectocarpus subulatus male Bft15b)
GTGAACGAAAATTTGAGGCTCGGTGGGGTGCGCGCTGGCAACCCCAAATC
ACACGACGGCAGCACTGCACCCGGAGTGCCCAAGATGTGGGAGGCGCTTC
AATCGCTCGACTATGACGATCCAGCGAAAAAATGAGTTTTGTTATTTCGT
TAGTATGTCGCACATTTGAGACATACATGTTGTGCTGCTGGTTCGCTTCT
ATTTACATGTAAAGGGCAGGTGCCCGGGGAGTTGCGGCTGTTTCTTTCTC
CTTTCCCCCGCGGAACGCAGCTATTGTTTGACTTGCTTTGAAAACGGGCC
TCGCAGGTTAACAGTAGGAATGCCAGCTGCCAGTTCTTAATTTTTGCCAC
TTATTTTATCAATTACGGGGGCGCTGGTTTCTTGGCTTATGGTGCAGTGC
CTCATGTGAGTTCGTCGTTCAAACGTCTCGCTGTTGTCAGGCGGAGGGAA
GAATGGACGTTCGAGGAAGGGTCGCGGAACGGAGAGCTGGACTAGGTCCG
CGCCCGCGAGAAGGTTGAAGGCTGGTGGACGGATATGCGTGCGGAGTTCA
GGGTGAGTTTCGGACAACGATCCACGGCGGGTGGATTTGGTATTTTCCGA
TTTCCTGTAGAACTACTTGCGCAAGATGCCCACCTCCGTGCTTCGACAGG
CCTTTTGTTGGTAGCCGCCTTCGTTGGGGACGCATTGGATCTTTGCTGCG
GTGGAAGTTGGGTTCAAGAAACCCGACCGTCCAGACGACCGTCTACCCTC
CTGTGTCCCATCCCTTGGTCTTTTTTTTTTTTCGGGTGCGGGGGGCGGGT
TCAGCACTCCTGCATGCCGGGTGCTGTTGTTACAGAACGAAAGCCCACCC
CCCGTCTTGTTTTTCTTTTCTTTGTCGGCAGTAGTGGTAGTTGGTCGACA
AACTGCCCCCGTCCAGACGTCCGTCTGCCCTCCTCTGCTCCGTCCTCTGG
TCGTTTTTTTTTGGGAGGGGGGGGGGGGAACGGGTTCAACGGGCATATGT
GCCGGGTGCTGTTTCAGTCCAGTAGCACACGACCCCTCCACTTATTTTTT
TTTGTTTTTTCGGTCTGACGCACGCGGCGGTGCAGTACTTAATCGAAACA
TTCGCCCCGCCCAGACGACAGTCTCCCATAGTGTGCTCCTTCCTGGTTTG
TTTTGACGTCGGGTGCGGGCACACGTGTCGCGTGCTTGTTTCATCGGTAA
CTATCTGACATAGTCCCGTACGTTGTGTGCTGGGTGAACGTTGTCAATGT
AGGCGTCGCTCATCGCTGGTGGTGTCTAGAACGCGTTTGATCTCCTTTGG
GGAAAGTTGGGACGGTCAGAAATACGTTTTCCCGAACCCCAACTCCTTAC
ATCTATTGTAACCCCTCTTTTCATGCCAACACATGTAATTGTGCTATGCA
TGTTTTCCAGATCGCCAACAAGAACAAAGAGAAGAGTGGGAACAACGCTG
AACACCACTGGTCCTTCTGTAACCAGAGGCTGTACGTCCTGCTCATGATG
GACTGGTACGAGCTGAGGGGAGGCGACAGCGCCAACGAGCACTGCGCAAG
GTACTTCAGCGTGAGGCTCAGCGAGGAGGATGGGGAAGCTTTCAACACTC
TGTCCATGGAAGACGAGCAGTCGTCCAGCGATTCGGATGAACCGCCCGCT
CCGAAGGGGAAGCCGCGAGAGCGGAAGGCGAGGGAGAAGGGGAAGGTAAA
ACCGGAAGAAACCTTGGTCCAACTTGTGGACGCATTCAAGACCACACCGA
ACAGCGTGGCAGCGGCGATGTACAAGATTGCGGACAACGACGCCGGGAAT
CCCGTGGATATGTTGATTGCTGCCTGCGATCGCGTTGATGACTTGGGAGA
GAAGTTGGGAAAATGAGAAAGCAGCAGAAGCGCCCAAAACAAAAATTGAA
AGGATCACTCAAAACCTCGCAGTTTTAAAGCGCGGGAGGCGTACGAAAAA
ATCTACAAAAAGACCAGGCCTGCTGCAGAGAAAGCGGCGGAGGAAGGAAG
AAGAAGAGGAAGAGAGTGAGGTTTCGTAGCGAGTTCTCGTGAAGGCCCTC
CGGACAAACCAAACCCGACCTCTTCCAACGACGCATGAAGAGGATGCCTT
GTCGTTTTGGGTTTGATTCACACGGCATAGGTTGGGTACATGCATTGTTT
TTAGTATGGCTAGTTTTTTTTCCGTTGTGTGCAGCACGAAGGTAGGGCAC
T
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Coding sequence (CDS) from alignment at Scaffold_344:189655..191855-

>EsuBft103_20a-0001 ID=EsuBft103_20a-0001|Name=EsuBft103_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=474bp|location=Sequence derived from alignment at Scaffold_344:189655..191855- (Ectocarpus subulatus male Bft15b)
ATGCGTGCGGAGTTCAGGATCGCCAACAAGAACAAAGAGAAGAGTGGGAA
CAACGCTGAACACCACTGGTCCTTCTGTAACCAGAGGCTGTACGTCCTGC
TCATGATGGACTGGTACGAGCTGAGGGGAGGCGACAGCGCCAACGAGCAC
TGCGCAAGGTACTTCAGCGTGAGGCTCAGCGAGGAGGATGGGGAAGCTTT
CAACACTCTGTCCATGGAAGACGAGCAGTCGTCCAGCGATTCGGATGAAC
CGCCCGCTCCGAAGGGGAAGCCGCGAGAGCGGAAGGCGAGGGAGAAGGGG
AAGGTAAAACCGGAAGAAACCTTGGTCCAACTTGTGGACGCATTCAAGAC
CACACCGAACAGCGTGGCAGCGGCGATGTACAAGATTGCGGACAACGACG
CCGGGAATCCCGTGGATATGTTGATTGCTGCCTGCGATCGCGTTGATGAC
TTGGGAGAGAAGTTGGGAAAATGA
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