EsuBft103_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_19a-0001
Unique NameEsuBft103_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:184878..186614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft103_19
Protein domainsIPR027806
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl4776|Peronosporales
Length92
Hectar predicted targeting categoryother localisation
Evalue6.02e-11
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_19aEsuBft103_19aEctocarpus subulatus male Bft15bgeneScaffold_344 184878..186614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_19a-0001EsuBft103_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 184878..186295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_19a-0001-exonagat-exon-396Ectocarpus subulatus male Bft15bexonScaffold_344 184878..184886 +
EsuBft103_19a-0001-exonEsuBft103_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 184934..185203 +
EsuBft103_19a-0001-exonagat-exon-395Ectocarpus subulatus male Bft15bexonScaffold_344 185490..185755 +
EsuBft103_19a-0001-exonagat-exon-397Ectocarpus subulatus male Bft15bexonScaffold_344 186232..186614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_19a-0001-cdsEsuBft103_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 184878..184886 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_19a-0001-exonagat-three_prime_utr-382Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 186296..186614 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_19a-0001 ID=EsuBft103_19a-0001|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=928bp|location=Sequence derived from alignment at Scaffold_344:184878..186614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCAGGTGATCTGCGACGCGGACTACATCGTCACTGCCGCCTGCTG
CAACACCCCGGGAAGCACCAACGTTCGGCAGGCATACAAGGAGGCCGAGT
TCGACCAGCTTGTCGAGGGTCTTCCAGGCAACTATGACGTCGTGGGAGAT
ACGGCTTACGGGGCAACGGACAAGATGCTTGTACCGTACCCAGGATGCGA
CCTCGACGCAGACCAACAGGCCTTCAACTTCTTCCAGTCGCAAGGGCGCA
TGTGCATCGAGCAGACGTTTGGGATCATGGTGCATCTGCGCAACACCGCG
AGCGTTGTGCACGCTATCACTCGGCTTCACAACTACCTCCGAAGGTGTCG
TTCTGAACCGCCACCTGCCACCGCCCGGTTCTTGAATGAGAACGGAACCA
TCAGGAGCAACCGCTGGGCAACACCATCAGACTCGCGGAACATCAGGGAG
AACATTCGGAATCGAACTTTCATGCGGCCGGCGGAAAACATCCCGCGAAA
CAGGCGATGGAGGACGGCCATCACTCGTCGTTGCACCGGCGAATGGGCCT
CACCAGAGTGCCCACTTCTGTCCGACATCGTGGTGGGTGTACCCACCGGC
GCCAACTAATTTTTGCATGTACTTATGTCTATATTTTGACGCACTTCTGT
CCAAATTGTACCCACATCTGTCCACTTACGGACGGCCGAAATCGAGTGGA
AATCGAGCGGAAATCGACCCCCACGTCACCGCACGGCAGAACATCGAATA
GCCTCGGAATGTCTCAGAACCTCCCAACACCGTATCCATGGCATCTTTGG
TATCCATGGCTGCCGACTGCGGACCGACCGCGGAGGAACATGTCAGACAC
ATGCCAGGCCCCTTCGGTACCGGCACGGGAGGATGCCAGGCACGGGAAGT
TGCCCGCGGCAAGCCCGGCGAGCAGCGC
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protein sequence of EsuBft103_19a-0001

>EsuBft103_19 ID=EsuBft103_19|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=202bp
MPQVICDADYIVTAACCNTPGSTNVRQAYKEAEFDQLVEGLPGNYDVVGD
TAYGATDKMLVPYPGCDLDADQQAFNFFQSQGRMCIEQTFGIMVHLRNTA
SVVHAITRLHNYLRRCRSEPPPATARFLNENGTIRSNRWATPSDSRNIRE
NIRNRTFMRPAENIPRNRRWRTAITRRCTGEWASPECPLLSDIVVGVPTG
AN
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mRNA from alignment at Scaffold_344:184878..186614+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_19a-0001 ID=EsuBft103_19a-0001|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1737bp|location=Sequence derived from alignment at Scaffold_344:184878..186614+ (Ectocarpus subulatus male Bft15b)
ATGCCCCAGGTATTTGTATATGTTGTATATGTATATGTGTGTGTTTCCCG
ACTCAGGTGATCTGCGACGCGGACTACATCGTCACTGCCGCCTGCTGCAA
CACCCCGGGAAGCACCAACGTTCGGCAGGCATACAAGGAGGCCGAGTTCG
ACCAGCTTGTCGAGGGTCTTCCAGGCAACTATGACGTCGTGGGAGATACG
GCTTACGGGGCAACGGACAAGATGCTTGTACCGTACCCAGGATGCGACCT
CGACGCAGACCAACAGGCCTTCAACTTCTTCCAGTCGCAAGGGCGCATGT
GCATCGAGCAGACGTTTGGGATCATGGTGAGTGTTGGCGTAGGTAGTTCG
TGGGCATATCACGGGATCATTAGCCTGTTCGCGAATGGTGTGCACGATTG
GTGACAGATTCAGCTGGGTCGTGTCATGTTTTTTATAGCACGAGAACAAA
GTTTACAAAGTACATCCGGAGATATCGCACAAACATTGCTATGAAGTGGA
GAGGTGGCTGTGAAATCGCGGGATACTTGATACCTGAACGCCCCCCCGCT
CCCCGCCCTCGCCCTACATGTTGCAGATGAAGCAGTGGCCCATTCTGTGG
AGCCCGCTGCAGGTGCATCTGCGCAACACCGCGAGCGTTGTGCACGCTAT
CACTCGGCTTCACAACTACCTCCGAAGGTGTCGTTCTGAACCGCCACCTG
CCACCGCCCGGTTCTTGAATGAGAACGGAACCATCAGGAGCAACCGCTGG
GCAACACCATCAGACTCGCGGAACATCAGGGAGAACATTCGGAATCGAAC
TTTCATGCGGCCGGCGGAAAACATCCCGCGAAACAGGCGATGGAGGACGG
CCATCACTCGTCGTTGCACCGGCGAATGGTAAACTAGGGCGGGGGGGGGG
GGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGACCATTGACCTCGCAT
CCCTACAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACCAGGCCCT
CACATCACCAAGCGCGAAGCGCCGTGAGATATTCGGCGAGTCGCATGAAG
GGTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTTGTGCTTACTTCCTT
GCGTACGGATGACAGCTGCGAATGAGTTAATTTATTGGGAAACGGACACA
AGTGGATATGCCCACCCCTTTCTCGGACAAAAGTGGGTACTGTACTCGAT
AATCCAGCGCGAGCGCACTCCATAGGCGGCCCCCAAACGACTCAAAACCC
CATTCTGACACCTGCACGACACAGCCAGGCTGTACACAGCACGGGCATCG
ATTTTTTCCCACTTTCAGGCACACCTTTGGCCCTTATACCGCCGAGGCGC
GCAGGGCCTCACCAGAGTGCCCACTTCTGTCCGACATCGTGGTGGGTGTA
CCCACCGGCGCCAACTAATTTTTGCATGTACTTATGTCTATATTTTGACG
CACTTCTGTCCAAATTGTACCCACATCTGTCCACTTACGGACGGCCGAAA
TCGAGTGGAAATCGAGCGGAAATCGACCCCCACGTCACCGCACGGCAGAA
CATCGAATAGCCTCGGAATGTCTCAGAACCTCCCAACACCGTATCCATGG
CATCTTTGGTATCCATGGCTGCCGACTGCGGACCGACCGCGGAGGAACAT
GTCAGACACATGCCAGGCCCCTTCGGTACCGGCACGGGAGGATGCCAGGC
ACGGGAAGTTGCCCGCGGCAAGCCCGGCGAGCAGCGC
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Coding sequence (CDS) from alignment at Scaffold_344:184878..186614+

>EsuBft103_19a-0001 ID=EsuBft103_19a-0001|Name=EsuBft103_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=609bp|location=Sequence derived from alignment at Scaffold_344:184878..186614+ (Ectocarpus subulatus male Bft15b)
ATGCCCCAGGTGATCTGCGACGCGGACTACATCGTCACTGCCGCCTGCTG
CAACACCCCGGGAAGCACCAACGTTCGGCAGGCATACAAGGAGGCCGAGT
TCGACCAGCTTGTCGAGGGTCTTCCAGGCAACTATGACGTCGTGGGAGAT
ACGGCTTACGGGGCAACGGACAAGATGCTTGTACCGTACCCAGGATGCGA
CCTCGACGCAGACCAACAGGCCTTCAACTTCTTCCAGTCGCAAGGGCGCA
TGTGCATCGAGCAGACGTTTGGGATCATGGTGCATCTGCGCAACACCGCG
AGCGTTGTGCACGCTATCACTCGGCTTCACAACTACCTCCGAAGGTGTCG
TTCTGAACCGCCACCTGCCACCGCCCGGTTCTTGAATGAGAACGGAACCA
TCAGGAGCAACCGCTGGGCAACACCATCAGACTCGCGGAACATCAGGGAG
AACATTCGGAATCGAACTTTCATGCGGCCGGCGGAAAACATCCCGCGAAA
CAGGCGATGGAGGACGGCCATCACTCGTCGTTGCACCGGCGAATGGGCCT
CACCAGAGTGCCCACTTCTGTCCGACATCGTGGTGGGTGTACCCACCGGC
GCCAACTAA
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