Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft103_16 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Length | 170 |
| Hectar predicted targeting category | signal anchor |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_16a-0001 ID=EsuBft103_16a-0001|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_344:166791..168697+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACCAGCGCCGGGGGGGGCGTGTCTTCCCCCCGTGACTCTCCCCTGCG
GCCCGCTGCGGCCATACTTGCGGCGAACCCTGTCTCGGGCACTAACCGAG
ACAGGGCTTCCATGACGGTTCCTAACTTTTCCGTCATCATGCTCTCCATT
TTTGCGGTGGCCTGGTCGATGGCTGTTGCCCTCTGTTGGTATGCCCTTGT
TGTGTGACCTCCAGAGTCCAAAGAGTGTTGTTAACGGCATGTATTATCGT
AGGGGGACATGAGGGAGAAGGAGGGAGGAAGAGTGCCAGGCCCAAAGTCA
GTCGGAAAGGGGGCCCGCAACTCGAATCTCAAGGTCTCTCCTAGCCGCCC
CTCAAGGCAATCCCATCTGCGGTACACGAAACCGCCAGTGATTTGGTACA
ATCCGACTAATCTACCTCCACGCACGAACACCCTCCCTTGGTTCTTTACG
CCAGTGAATAACCACCACTCGTGCGTCGAAGAGTACATCCGAAAAGCACC
TAAAACAACGCAAATCAGAAACAAGGGGAAACCCGCCATCGGATCAAAAC
CCCTTACAAATCTCAACGCCTTCACGCCGTTCATATCACGAAAGATTCCA
ACGGCCGTACTGCAACATCAAGGCAAGACAATATCTACCACCGCCCCCGG
CTCGCTCTCTACGCCACGCTCGGCTGACTCGACAAGGTCCTCCCTGCGCA
GCACAAAAACAAATCATCAAGCACGCCCCTACCCTTCTGGTGATGTCGTA
CGACAAACTTCGCCAAAATAGCCACCTTCAATGCACCTGATATCCATTGT
CCGCTCCTCGAATAACACTGATAGTCTACACGCCGTATGCCCTTCCTTAC
GCAACACATGCCTAGTAGTTGGGGACGACTTCATACGCCCTCTCTAGTGT
GCCAAACAACGCGCGTCGCTTTCCCCTTCTCGGAAAGGCGCTTTCCTTTC
TTCATTCCTTGAACAAAGGCGACGCCTGGTGAGATTCGAACTCCCGGCGT
ATCCTTACTCGTTACATGGTCTTATTCACCAGACTACTCAGTCACTTGGT
TGCCTAGAAGCACATACACGTGGCGATCGTCCAGCATTCAATCAACAAAT
CAGACACATGGTACATGCAACATCGTGGAAACACGACCAAACTCCTCCCG
TAAATAGAGTCCAACAACACCCAAGAGGCAACGCCCTCCGTCATCCAATA
ACTGCAAGATCGAAATAGTTCCACCTCAATCATGAGAGGACGACCATAAC
TCTGTCACGTTGCAGAATATCTGCAGACCGGGCGCAAAACTCTCCGAGCA
TTACACTCTCCAAAACAAAAAACCCACGCACGGCGCCACCCTCCCTTATT
CTGCAACCACACAGGCCACACAGGGAACACAAAACAAGCGGTGACGCGTG
AAACTCGAGCATGTGGCGGCGGAAACACCCATGGATTTCAACAAGCAATT
AACAGCGATCTATGCAAGTCCGCAACAGCGCCTCACTTGCGACTATTCAC
GTGCAATACAAGTTATCGCCCTTTACTGCTAAACGCCACATACAAAAGAA
TCAAAAAAAAAAACAAAATAAAACACATTCCGGTACCAACCAAAATGAAG
ATAGTGCCCGCGGAAATCCACCGCGCGGCTGGTCCGTTTTGCTTCCCTCC
CCACCCGCCCACACCCGACGTCCCTCGGCGTCCCGACGTTCCTCGGTGTA
GCGGTGTAG back to topprotein sequence of EsuBft103_16a-0001 >EsuBft103_16 ID=EsuBft103_16|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=68bp
MTSAGGGVSSPRDSPLRPAAAILAANPVSGTNRDRASMTVPNFSVIMLSI
FAVAWSMAVALCWYALVV back to topmRNA from alignment at Scaffold_344:166791..168697+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_16a-0001 ID=EsuBft103_16a-0001|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1907bp|location=Sequence derived from alignment at Scaffold_344:166791..168697+ (Ectocarpus subulatus male Bft15b)
ATGACCAGCGCCGGGGGGGGCGTGTCTTCCCCCCGTGACTCTCCCCTGCG
GCCCGCTGCGGCCATACTTGCGGCGAACCCTGTCTCGGGCACTAACCGAG
ACAGGGCTTCCATGACGGTTCCTAACTTTTCCGTCATCATGCTCTCCATT
TTTGCGGTGGCCTGGTCGATGGCTGTATTGACCTCCTCGTGGGTCGGGGC
TGCATCGCCATTGCCGAACTCTCCAGACGCAGACGGCATGTGTCCACTTC
ACTAAGATAGTATGAGGTCAACCTTCGCTCTAGAGTGTTGATTGGTTTCA
AGCCTAGTGCTGCTGGATAAGCACGGCTGACCCGGTTGACAGGAATGAAG
AGATGGTGAAGTCGTAAATTAGGTTGCCCTCTGTTGGTATGCCCTTGTTG
TGTGACCTCCAGAGTCCAAAGAGTGTTGTTAACGGCATGTATTATCGTAG
GGGGACATGAGGGAGAAGGAGGGAGGAAGAGTGCCAGGCCCAAAGTCAGT
CGGAAAGGGGGCCCGCAACTCGAATCTCAAGGTCTCTCCTAGCCGCCCCT
CAAGGCAATCCCATCTGCGGTACACGAAACCGCCAGTGATTTGGTACAAT
CCGACTAATCTACCTCCACGCACGAACACCCTCCCTTGGTTCTTTACGCC
AGTGAATAACCACCACTCGTGCGTCGAAGAGTACATCCGAAAAGCACCTA
AAACAACGCAAATCAGAAACAAGGGGAAACCCGCCATCGGATCAAAACCC
CTTACAAATCTCAACGCCTTCACGCCGTTCATATCACGAAAGATTCCAAC
GGCCGTACTGCAACATCAAGGCAAGACAATATCTACCACCGCCCCCGGCT
CGCTCTCTACGCCACGCTCGGCTGACTCGACAAGGTCCTCCCTGCGCAGC
ACAAAAACAAATCATCAAGCACGCCCCTACCCTTCTGGTGATGTCGTACG
ACAAACTTCGCCAAAATAGCCACCTTCAATGCACCTGATATCCATTGTCC
GCTCCTCGAATAACACTGATAGTCTACACGCCGTATGCCCTTCCTTACGC
AACACATGCCTAGTAGTTGGGGACGACTTCATACGCCCTCTCTAGTGTGC
CAAACAACGCGCGTCGCTTTCCCCTTCTCGGAAAGGCGCTTTCCTTTCTT
CATTCCTTGAACAAAGGCGACGCCTGGTGAGATTCGAACTCCCGGCGTAT
CCTTACTCGTTACATGGTCTTATTCACCAGACTACTCAGTCACTTGGTTG
CCTAGAAGCACATACACGTGGCGATCGTCCAGCATTCAATCAACAAATCA
GACACATGGTACATGCAACATCGTGGAAACACGACCAAACTCCTCCCGTA
AATAGAGTCCAACAACACCCAAGAGGCAACGCCCTCCGTCATCCAATAAC
TGCAAGATCGAAATAGTTCCACCTCAATCATGAGAGGACGACCATAACTC
TGTCACGTTGCAGAATATCTGCAGACCGGGCGCAAAACTCTCCGAGCATT
ACACTCTCCAAAACAAAAAACCCACGCACGGCGCCACCCTCCCTTATTCT
GCAACCACACAGGCCACACAGGGAACACAAAACAAGCGGTGACGCGTGAA
ACTCGAGCATGTGGCGGCGGAAACACCCATGGATTTCAACAAGCAATTAA
CAGCGATCTATGCAAGTCCGCAACAGCGCCTCACTTGCGACTATTCACGT
GCAATACAAGTTATCGCCCTTTACTGCTAAACGCCACATACAAAAGAATC
AAAAAAAAAAACAAAATAAAACACATTCCGGTACCAACCAAAATGAAGAT
AGTGCCCGCGGAAATCCACCGCGCGGCTGGTCCGTTTTGCTTCCCTCCCC
ACCCGCCCACACCCGACGTCCCTCGGCGTCCCGACGTTCCTCGGTGTAGC
GGTGTAG back to topCoding sequence (CDS) from alignment at Scaffold_344:166791..168697+ >EsuBft103_16a-0001 ID=EsuBft103_16a-0001|Name=EsuBft103_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=207bp|location=Sequence derived from alignment at Scaffold_344:166791..168697+ (Ectocarpus subulatus male Bft15b)
ATGACCAGCGCCGGGGGGGGCGTGTCTTCCCCCCGTGACTCTCCCCTGCG
GCCCGCTGCGGCCATACTTGCGGCGAACCCTGTCTCGGGCACTAACCGAG
ACAGGGCTTCCATGACGGTTCCTAACTTTTCCGTCATCATGCTCTCCATT
TTTGCGGTGGCCTGGTCGATGGCTGTTGCCCTCTGTTGGTATGCCCTTGT
TGTGTGA back to top
|