Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 4558.Sb07g003556.1 |
| ProteomeId | EsuBft103_14 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 35493|Streptophyta |
| Length | 805 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.7e-32 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37YYP@33090|Viridiplantae,3GQD7@35493|Streptophyta,3M3FD@4447|Liliopsida,3IKKZ@38820|Poales |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft103_14a-0001 ID=EsuBft103_14a-0001|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=805bp|location=Sequence derived from alignment at Scaffold_344:154911..155715- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAATGTTCGCGTTAGC
AGTAAAGGCCCCGATAGGCTGTAACGTGACAAATGCTAGATGGGTCTATA
AATGGAGAGCAGACAAAACAGGCAAGATAGTGAAGGCCAAGGCTAGGCTT
GTAGCGAAGGGCTTCAAGCAGAAGTATGGTGTGGATTATCTTGAGACTTT
CTCGCCTACTGCAAATGCTGCATCGTTGGTAGCATTGGCATGCAAGTATG
ATTTGGAATTTCTTCACTTTGACATTGAGCAAGCGTTTGTTCAGTCGGAA
TTGGATCATGAGGTGTTCATGAAGATGCCTCCTGGCTGCGAGTCGATGTC
AGGAAAGGTCCGTTTAGACAAGAGTTTGGAGGGACTGAGGCAGGCATGTA
GAACATTTCTCAAGAGATTTGTGTCGGACCTGAAGTGGATTAGTGTCGAA
CAATCTCTATCTGACCCCTGTGTTCTGCGTTTCATGATGAGAAACGAGGT
GATGGGTATGATCGCGATTCATGTGGATGACTTGCTGTATGGAGGAATTG
AGAGTCTTGCCAAGATAGTTGTGCAAGCGCTAGGTGACTCTTTTCACACG
AAGAATTTTGGCGAGGTCAAGTTCTTTCATGGTTGCGCATTTAGTCGCGA
CCGCGAGGCTGGCAAGATTGAGATGTCTCAAGAGCGTTGCGTCAGGAGTC
TCGAGAGATTCAATATTTGTCGCACCAGCTCGACCCTGCTCCCCCTGCTA
GTGTTTACAGGTCTGTGATGGAGGAGGGGGCAGGAGATGTGCCGTTCCGA
GAGGT back to topprotein sequence of EsuBft103_14a-0001 >EsuBft103_14 ID=EsuBft103_14|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=255bp
MSAEFEGLLRAGMFALAVKAPIGCNVTNARWVYKWRADKTGKIVKAKARL
VAKGFKQKYGVDYLETFSPTANAASLVALACKYDLEFLHFDIEQAFVQSE
LDHEVFMKMPPGCESMSGKVRLDKSLEGLRQACRTFLKRFVSDLKWISVE
QSLSDPCVLRFMMRNEVMGMIAIHVDDLLYGGIESLAKIVVQALGDSFHT
KNFGEVKFFHGCAFSRDREAGKIEMSQERCVRSLERFNICRTSSTLLPLL
VFTGL back to topmRNA from alignment at Scaffold_344:154911..155715- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft103_14a-0001 ID=EsuBft103_14a-0001|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=805bp|location=Sequence derived from alignment at Scaffold_344:154911..155715- (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAATGTTCGCGTTAGC
AGTAAAGGCCCCGATAGGCTGTAACGTGACAAATGCTAGATGGGTCTATA
AATGGAGAGCAGACAAAACAGGCAAGATAGTGAAGGCCAAGGCTAGGCTT
GTAGCGAAGGGCTTCAAGCAGAAGTATGGTGTGGATTATCTTGAGACTTT
CTCGCCTACTGCAAATGCTGCATCGTTGGTAGCATTGGCATGCAAGTATG
ATTTGGAATTTCTTCACTTTGACATTGAGCAAGCGTTTGTTCAGTCGGAA
TTGGATCATGAGGTGTTCATGAAGATGCCTCCTGGCTGCGAGTCGATGTC
AGGAAAGGTCCGTTTAGACAAGAGTTTGGAGGGACTGAGGCAGGCATGTA
GAACATTTCTCAAGAGATTTGTGTCGGACCTGAAGTGGATTAGTGTCGAA
CAATCTCTATCTGACCCCTGTGTTCTGCGTTTCATGATGAGAAACGAGGT
GATGGGTATGATCGCGATTCATGTGGATGACTTGCTGTATGGAGGAATTG
AGAGTCTTGCCAAGATAGTTGTGCAAGCGCTAGGTGACTCTTTTCACACG
AAGAATTTTGGCGAGGTCAAGTTCTTTCATGGTTGCGCATTTAGTCGCGA
CCGCGAGGCTGGCAAGATTGAGATGTCTCAAGAGCGTTGCGTCAGGAGTC
TCGAGAGATTCAATATTTGTCGCACCAGCTCGACCCTGCTCCCCCTGCTA
GTGTTTACAGGTCTGTGATGGAGGAGGGGGCAGGAGATGTGCCGTTCCGA
GAGGT back to topCoding sequence (CDS) from alignment at Scaffold_344:154911..155715- >EsuBft103_14a-0001 ID=EsuBft103_14a-0001|Name=EsuBft103_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=768bp|location=Sequence derived from alignment at Scaffold_344:154911..155715- (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGAGTTTGAAGGCTTGTTAAGAGCAGGAATGTTCGCGTTAGC
AGTAAAGGCCCCGATAGGCTGTAACGTGACAAATGCTAGATGGGTCTATA
AATGGAGAGCAGACAAAACAGGCAAGATAGTGAAGGCCAAGGCTAGGCTT
GTAGCGAAGGGCTTCAAGCAGAAGTATGGTGTGGATTATCTTGAGACTTT
CTCGCCTACTGCAAATGCTGCATCGTTGGTAGCATTGGCATGCAAGTATG
ATTTGGAATTTCTTCACTTTGACATTGAGCAAGCGTTTGTTCAGTCGGAA
TTGGATCATGAGGTGTTCATGAAGATGCCTCCTGGCTGCGAGTCGATGTC
AGGAAAGGTCCGTTTAGACAAGAGTTTGGAGGGACTGAGGCAGGCATGTA
GAACATTTCTCAAGAGATTTGTGTCGGACCTGAAGTGGATTAGTGTCGAA
CAATCTCTATCTGACCCCTGTGTTCTGCGTTTCATGATGAGAAACGAGGT
GATGGGTATGATCGCGATTCATGTGGATGACTTGCTGTATGGAGGAATTG
AGAGTCTTGCCAAGATAGTTGTGCAAGCGCTAGGTGACTCTTTTCACACG
AAGAATTTTGGCGAGGTCAAGTTCTTTCATGGTTGCGCATTTAGTCGCGA
CCGCGAGGCTGGCAAGATTGAGATGTCTCAAGAGCGTTGCGTCAGGAGTC
TCGAGAGATTCAATATTTGTCGCACCAGCTCGACCCTGCTCCCCCTGCTA
GTGTTTACAGGTCTGTGA back to top
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