EsuBft103_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_11a-0001
Unique NameEsuBft103_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:92027..92893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length55
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_11aEsuBft103_11aEctocarpus subulatus male Bft15bgeneScaffold_344 92027..92893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_11a-0001-exonEsuBft103_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 92027..92039 +
EsuBft103_11a-0001-exonagat-exon-353Ectocarpus subulatus male Bft15bexonScaffold_344 92357..92893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_11a-0001-cdsEsuBft103_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 92027..92039 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_11a-0001-exonagat-three_prime_utr-374Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 92431..92893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_11a-0001EsuBft103_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 92027..92430 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_11a-0001 ID=EsuBft103_11a-0001|Name=EsuBft103_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=550bp|location=Sequence derived from alignment at Scaffold_344:92027..92893+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAACGCAGGAGGCGGACTCAGGAGGAGGCTGCGTGACGTGCAGTG
CTGGGGAATGACGGTCTTAGTCCTGGAAGGTGTCTAGGAAGGTGGGTAGT
AATGTTGTTGTCTTCAGCGTGTGAGGGTCACATCAGAGAGTAAGGCTCCT
CACACCACTCATAATTAAACATCAGAATGCTTTCACAGTATCGTTACATA
TCGTTGGCGGTAATATCGTTCGGAACATCTCACCGAACGGTGTGTGATTT
TCAGGTCAACACAAAACCATATTGCGCCCTGGAGAACGGGTTCGTCTCCC
TTTTGACGCACCGCCGCGTATAATTTTTGTTCCGATAAATGGACTCAACT
CCTTCCGGGCTTGTTTGACTCACGCCTTATCTACTATCTACACCCGAATT
TCTATGGGTCGCTTCGAACAGCAAAGAAGGCAACGCGTCAGCACCCAAGA
CACCCGCCAGTAGCACAAGGCACCCGGGATAATACTTCCGCCTCCAATGT
GTGTGTATTCATATGGCGCAGAGAGCGATATCCAAGAGACCTATGCAGGT
back to top

protein sequence of EsuBft103_11a-0001

>EsuBft103_11 ID=EsuBft103_11|Name=EsuBft103_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=28bp
MINAGGGLRRRLRDVQCWGMTVLVLEGV
back to top

mRNA from alignment at Scaffold_344:92027..92893+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_11a-0001 ID=EsuBft103_11a-0001|Name=EsuBft103_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=867bp|location=Sequence derived from alignment at Scaffold_344:92027..92893+ (Ectocarpus subulatus male Bft15b)
ATGATCAACGCAGGTGAGCTTTTCGATCACGCCGCGAAGCGAACCTGAAC
GACACTCGCACGAAAACAGAGGGGGTCATCCTCTTCCACTTGCAGAAGCC
GCTAAGACAACCTTGACCTACACCGTAAGGGCCAAGTGGCTGAACACAAC
CCCCGGATTGCCTGTGGGCTCTAATTGCGCCTTCTTATGTAGATGTGCCT
CCAAGGAAACTGGGCAATGGACACACAAAGAGTACACACCGGGCGTGATC
CGCCCAAATCGCCCTTGAGAGCAACAGCACCGAGGAGAGCAGCGACACAG
CATTCCGACGATGCGGATAGGTGATCGCAGGAGGCGGACTCAGGAGGAGG
CTGCGTGACGTGCAGTGCTGGGGAATGACGGTCTTAGTCCTGGAAGGTGT
CTAGGAAGGTGGGTAGTAATGTTGTTGTCTTCAGCGTGTGAGGGTCACAT
CAGAGAGTAAGGCTCCTCACACCACTCATAATTAAACATCAGAATGCTTT
CACAGTATCGTTACATATCGTTGGCGGTAATATCGTTCGGAACATCTCAC
CGAACGGTGTGTGATTTTCAGGTCAACACAAAACCATATTGCGCCCTGGA
GAACGGGTTCGTCTCCCTTTTGACGCACCGCCGCGTATAATTTTTGTTCC
GATAAATGGACTCAACTCCTTCCGGGCTTGTTTGACTCACGCCTTATCTA
CTATCTACACCCGAATTTCTATGGGTCGCTTCGAACAGCAAAGAAGGCAA
CGCGTCAGCACCCAAGACACCCGCCAGTAGCACAAGGCACCCGGGATAAT
ACTTCCGCCTCCAATGTGTGTGTATTCATATGGCGCAGAGAGCGATATCC
AAGAGACCTATGCAGGT
back to top

Coding sequence (CDS) from alignment at Scaffold_344:92027..92893+

>EsuBft103_11a-0001 ID=EsuBft103_11a-0001|Name=EsuBft103_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=87bp|location=Sequence derived from alignment at Scaffold_344:92027..92893+ (Ectocarpus subulatus male Bft15b)
ATGATCAACGCAGGAGGCGGACTCAGGAGGAGGCTGCGTGACGTGCAGTG
CTGGGGAATGACGGTCTTAGTCCTGGAAGGTGTCTAG
back to top