EsuBft103_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_8a-0001
Unique NameEsuBft103_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:73676..79432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G711
ProteomeIdEsuBft103_8
Protein domainsSSF51735
Protein domainsPF13460
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsIPR016040
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsPTHR12126
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein At1g32220. chloroplastic OS:Arabidopsis thaliana GN:At1g32220 PE:2 SV:1 [Automatic annotation]
Nb exon7
Max annot lvl2759|Eukaryota
Length1218
Hectar predicted targeting categorychloroplast
Evalue6.3e-229
EggNOG OGsCOG0702@1|root,KOG4288@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-01_011500.1
Date last modified2016-06-13
Date creation2016-06-13
Descriptionubiquinone-6 biosynthetic process
COG categoryGM
Cross References
External references for this mRNA
DatabaseAccession
GO0010287
GO0006979
GO0016168
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_8aEsuBft103_8aEctocarpus subulatus male Bft15bgeneScaffold_344 73676..79432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_8a-0001EsuBft103_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 73748..79312 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_8a-0001-exonagat-exon-352Ectocarpus subulatus male Bft15bexonScaffold_344 73676..73967 +
EsuBft103_8a-0001-exonagat-exon-349Ectocarpus subulatus male Bft15bexonScaffold_344 76939..77059 +
EsuBft103_8a-0001-exonagat-exon-350Ectocarpus subulatus male Bft15bexonScaffold_344 77253..77281 +
EsuBft103_8a-0001-exonEsuBft103_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 77736..77869 +
EsuBft103_8a-0001-exonagat-exon-347Ectocarpus subulatus male Bft15bexonScaffold_344 78027..78208 +
EsuBft103_8a-0001-exonagat-exon-348Ectocarpus subulatus male Bft15bexonScaffold_344 78596..78806 +
EsuBft103_8a-0001-exonagat-exon-351Ectocarpus subulatus male Bft15bexonScaffold_344 79184..79432 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_8a-0001-exonagat-five_prime_utr-247Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 73676..73747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_8a-0001-cdsEsuBft103_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 73748..73967 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_8a-0001-exonagat-three_prime_utr-398Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 79313..79432 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_8a-0001 ID=EsuBft103_8a-0001|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1218bp|location=Sequence derived from alignment at Scaffold_344:73676..79432+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TAGCGCTGTCACCCGGCACCCGCTCTCCGCTGCCGCTGCTCTTTTGCATA
TACACACCCGCTTGCCTGCACCATGCTGCGCCTTACCGTCCTAGCAGCCT
TCATGGCGGGTTGCAGCTCGTTCCTAGTCCCACCTGTGTTGCTGCGACCG
CCGATCATGGAAACCAGCAAAGGAGCACTGCACATGACGCAGAACAACGA
CGACATGGCCGACTCGGACTACTCTGGGTTGTCTGCTGGACCCTTCGACA
GGCGCACCCTCCTGACGGCTATTCCCGCGACTGTTGTGGCAGGGGTTCTT
GGCGTGGCAGTGGCGGGTTCGGCACCAGAGAAAGCACTGGCGAGAGCTAC
GCCGAAGGCCGCGCCGGCCGGGACGAACGTCGTGGTTCTCGGCGGCAACG
GTTTCGTTGGAAGCAAAGTCTGCGAACTTCTGGTCGAGGCCGGAGCAACC
GTCACAAGCGTGAGCCGTAGTGGCTCCAAGCCCGACAAGTGGGCAGCAGG
GCAGAGCTGGATGGACAAAGTGTCGTGGACGAAGGGAGACCCGACAGCCG
GGGACCTATCTGCCGTCTTCAGCAAGGCGGCGGCAGTGATATCGTGCGTA
GGGGTGATCGGGGGAAGCGACGAAGAGATGGAAAAGGGAAACGGAGATGT
CAACGTCCAAGCTGCAAAGCAGGCAGCGAGTGGGAAAGCCGGGCGCTTTG
TGTACGTGTCTGTGTCGCACCTGGTGCCGGAGGCTTTCGGGGGGGCTGCT
TTCAAAGGGTACTTCGACGGTAAGAGTCGCGCGGAGGAGGCCATCGCCAA
GTCCTTCCCGTCTACCGGAGTTCTGATCAAGCCAACCTTCATCTACGGCG
GGGAATCGTTCGGCCTAACCCCCCCTAGGGTTTCGGACGGCTACGGGTCA
GGGATAGACGCCCTCCTTTCCTCCGGCCCCATTCGAGCTATCGCCGGCGT
CGCCCCGGGCCTCATCAAGGTTGCGCTTTCGCCACCGGTATCGAGGGACA
ACGTCGCGCTAGCCTGCGTTGCTGGGGCGTTGGGGCGGCTACAAGGGACG
AACTTCGACGGAGCGGACGAGATCAACGCAGCGGCATCGAAGGCGTGATT
ACTTTTCTCGCGTGAAGGCCATCGCCGCCGACAGCATGACCGAATACGAT
CTGCCCGTGGAAAATATGCTAGCAAGTTCACTCAGAGAGAGAGAAAAGGT
CCCCGCAGTTTTCTGATT
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protein sequence of EsuBft103_8a-0001

>EsuBft103_8 ID=EsuBft103_8|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=341bp
MLRLTVLAAFMAGCSSFLVPPVLLRPPIMETSKGALHMTQNNDDMADSDY
SGLSAGPFDRRTLLTAIPATVVAGVLGVAVAGSAPEKALARATPKAAPAG
TNVVVLGGNGFVGSKVCELLVEAGATVTSVSRSGSKPDKWAAGQSWMDKV
SWTKGDPTAGDLSAVFSKAAAVISCVGVIGGSDEEMEKGNGDVNVQAAKQ
AASGKAGRFVYVSVSHLVPEAFGGAAFKGYFDGKSRAEEAIAKSFPSTGV
LIKPTFIYGGESFGLTPPRVSDGYGSGIDALLSSGPIRAIAGVAPGLIKV
ALSPPVSRDNVALACVAGALGRLQGTNFDGADEINAAASKA
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mRNA from alignment at Scaffold_344:73676..79432+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_8a-0001 ID=EsuBft103_8a-0001|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5757bp|location=Sequence derived from alignment at Scaffold_344:73676..79432+ (Ectocarpus subulatus male Bft15b)
TAGCGCTGTCACCCGGCACCCGCTCTCCGCTGCCGCTGCTCTTTTGCATA TACACACCCGCTTGCCTGCACCATGCTGCGCCTTACCGTCCTAGCAGCCT TCATGGCGGGTTGCAGCTCGTTCCTAGTCCCACCTGTGTTGCTGCGACCG CCGATCATGGAAACCAGCAAAGGAGCACTGCACATGACGCAGAACAACGA CGACATGGCCGACTCGGACTACTCTGGGTTGTCTGCTGGACCCTTCGACA GGCGCACCCTCCTGACGGCTATTCCCGCGACTGTTGTGGCAGGTGTGTAT ATGTATGCGTATGACCAGCCCCGTGAAAAGAGGAGTTGTGGGTTTAATTG TTGGCAATAGCACCGGCAACAACACCCGAGCTTGCTCGCTCATGTTTTTG CGACTTCGGCGCGTGTCGCCGCTGTGCACTCGCAAGTGTATGCCACGCTA TCCTTGGCTGTATCGCCATCGGGCCCATCCATCATCGACAGGAATGTTGT TGTCGCTCTGCACGCGTGCTACTTTTTCGCAGCGTGCAATTGCCGGGTGT TTGGCGAAGATCCACCATGCGGCGTAACTTTGGTCCTTTCTCTCTCTCTC GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TTTCTCTCTCTCTCCGCTCTCTATCGCTCTGTTTTCCCACAGCCTGTCCA AAGAAATCTGTGTGCTGTCAAGTCTCTCGCTTGTCTAGAGGATAGGCATG CAGCAGTACTTCTGTGTGCGAGGGCACACATGCTTTTTCCTCGTCAATCC ATACGCATTTTCCCTTAGAAGGGAAAATCCTTATGTTCTTCACAACTCGG TAACCTTCGAGTACACCACGTTGGGTGAGAGGTAACTTGTAGGTAGGTAG CCCGATGACCTACCGTAAACGACACAAGATATCACACCCCCTGGACCGAT TCAAGGCTCAATTTCTCAACAGCAGAAAGAGCGGGGGTGTCGAAAAGGGC GGCGTTGAAACCGTCTCGCCGAGCTTTCCGAAAATGTATCGTTTCGTTTA TGCATCCTCTTCGTCGTGGCGTAATCGAGCTATGAAAATCGCTCGAGGGG GTATGTTTACTCGTGTCGTATACGGTTAGGGGTGTCAATCGGGCAAATTT TGGAGCCAAAAATGTGACCGGTCAATTCAGCGATTTTTTGGGGGGGCACA CGGATTGGGTTCTTTGTCGGCTCTTGAGAGTGCCCGCCTATTATACTGAT TAAATACTACACTCAGTTTGTTTGTGCAGGTAGTTCTGCGCCCAGGCAGC AGCGTGGCTCTTCATACGTTACACACACCTGGACACAAGTCCAATAGAGG CGACTGTAAGCTCGGTTTTCTCTTAAAGTCAAAGGGCGGACGAACAACAC CAAAAACATGTTTTTTTGAGCTTTTTGCTCCACGCCCAAGGTGACCTTTG CTCCTCTCGAAAAAGCGAGCTTACAGCCCTCTACCTTGGGTTTACAGCTA TACCACACAACAAACCGCATCCCAATCGCATCAGCCAACCACGAGATCTA CATGTCTGAAAACGGCCCCTCCAGTGGGGCTGCACCGCCCACACCAGCAG ACCCTCCCAAAACTTGCTAGAGTTGGAGATGGAATAGTTTTTTGTGGTGG TTGCACAAAAGCACCTGCAGTAGGCTCGTGCGTCTGTTACAGAAGAGCGG GGGGCGGTCCATCATCACCAGCTAGAGAGAGGGGTGGTATTCATCATCAT TCGCTAGAGGGGGGGGTGGTGTCCANATTTAGGGCGCGCAGACAGACAGC CATCGCGTAATTTTCACGCCCCTGTGCATGAAAATTGTNCCGCCCACACC AGCAGACCCTCCCAAAACTTGCTAGAGTTGGAGATGGAATAGTTTTTTGT GGTGGTTGCACAAAAGCACCTGCAGTAGGCTCGTGCGTCTGTTACAGAAG AGCGGGGGGCGGTCCATCATCACCAGCTAGNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNTAGCGGTTGGGACAGCTCGGGCAAAATGTTACTTGTTGTG CGCAAGTTTTAGTTTGCAATTTGGTGCCGAGATGGTGAAATGGGCTCGAG TCTGCTGGTATTTAGGGCGCGCAGACAGACAGCCATCGCGTAATTTTCAC GCCCCTGTGCATGAAAATTGTTATTTTTCTCGTGTGCACATACTCCACAC ACGATCCCTCTCAACTTCTTTTTTTTTGCAAAACAAAAAGCGTACCCCTA ACGGGCCACACTTTTCGCAAAAAAAAAAAACTATTAAAAAATCGAGGTCC GCACCGTTCGGCAGCAGGAGGCGCGCTGCGCGAAAGCTGAATCAAAACAA AACGAAGTTAAAAGAGAGGACGGGGCAGTGTATGGTTGCCGCGTCAGCAG AAGATAACACGCGGCGCGCTATCGAACGCGGCAGCCTCACCGTCGTAGAT AGAACGCTGGAGGAAACGAAGGAGGAGTTGTTCAAAAGTTAGAAAATTGT GGAAGAGAGCCAGGCTAGCTGCAGCATGGCGATGGAGTTCGCGCGCGAGA AAGACGAGGAGCTCAAGTGGGAGCGGGCACGGCGGCGGCAGGTGTCTGCG TGGCTTCACCGCCCGGCTGCTGCTCGGGTGTGTCATGAGGCATGTGTTCT AGAGTGGGACCGCGCAAAGGTGTTGTGTTGTGTCCCACAGCAGGACACAT CAGAGGACACACACGAGCGGCGCCCTCGCGCGTGCGCGTCAGGTGTTTTT AGGGAGCTTTCGGACCGTTCCGTGCAATTTTATTGGTCAGTCGATTTTCC ATCAGGAAGATCCGAGGTCACTTTTTCAATTCTTTTCCTATGGGAAATTT GCTGCTTTGACACCCCTACCGGTACGAACACCGGGCGTAGCCTTGGTAGA TGTACGGCATATCCACTGTGCTACAAGTCAGCGCTGGCCGTAGCATAGTG AATATGCTGTACAGAAAACTGCAGCCGCTACCTTCCTAGAGATTGCTTGA GTTATGCCGCCCGCAGCAGTGCATTCTGCAACCAATGCCATGGGGTCTCC AGTGTTGCGCAAACTGTTTCTGTCACCTCAAGAATGTGAGCTTGGTGCCA AACGATCAAGACTGCGAAAAGCACGAACAACACTACCAGTACCAGCCATC ACACCTGTGGATTGACGCAAGTACTCCTCAGACCTTTCGCCAAGGGCACC ATATGACGTTAGGCTGCCCACAATGGTGGCACGCAACGGTTACCCATGCG CGTCTGCGTACAGGGGTTCTTGGCGTGGCAGTGGCGGGTTCGGCACCAGA GAAAGCACTGGCGAGAGCTACGCCGAAGGCCGCGCCGGCCGGGACGAACG TCGTGGTTCTCGGCGGCAACGGTTTCGTTGGAAGGTAAGTCATTGGGCAC AGTCATGAGGATTTACTCGTCATGAAGGTGCTTGTGGCACTGTACTGCGG TGGTGCGGTGTCTGCTGCTTGTGGCCCAATTCATGCTCTCCATTTAAACT GCCTTGTTTGTTTGTTCGGCGGCGATGCACTGGGCTCTCGTGCGAACAAC GACGAACACGACTTCCAACACCTACAGCAAAGTCTGCGAACTTCTGGTCG AGGCCGGTGAGAGATTTTCCGCTGATGAGTTCGGGTTTTGAATCGTGGTG GGGGCATGTTCGGGAGAGATATCAGAGCTCGAGGATGACATGATTTGATT ATGGTAGGGCTTCCTCGACAGAACGAGCGACTGTGTAAAGTCACGCCTCA TCACTTTTCTATCCTTCTCGGGGGTTTTGCTTGGTGCCTTCGTATGCCCC CTGCCGATAGATTACACGGAGTTCATTTGTCGACACTTTCGCCGGGGTTG TGCACAAACGCAGTCGGTGACCGTAGAATGGATGACTGGGTCCGCGAAAT GTTGTGGTCGTCCCTAAGGCAATCTTGGGTGTGAGAATATGTAGCCACAG GGGCGGTGGCACCATTGCGACCTGCTATACCCCCCCCCTCGTCCTGACAC AGAAAATGTTTTACTGCCCTCGCCGTGCTTGGACAATGTGGCACATTACG TGTTTGGCAGGAGCAACCGTCACAAGCGTGAGCCGTAGTGGCTCCAAGCC CGACAAGTGGGCAGCAGGGCAGAGCTGGATGGACAAAGTGTCGTGGACGA AGGGAGACCCGACAGCCGGGGACCTATCTGCCGTCTTCAGCAAGGTAAGG AAAGGAAGCACGGCCTAACACCTTCCTCTCTTCCCCCTGCCAAGCTTTGT TACCCTCGGCGCAAGCCTGACCTAAACACCTCATCCCGCTCGCGCTGTGC TCCGTGTCCTTGGTGCGTCATACTATTTCATTGCGTTGTGTTGTCGACAA GGCGGCGGCAGTGATATCGTGCGTAGGGGTGATCGGGGGAAGCGACGAAG AGATGGAAAAGGGAAACGGAGATGTCAACGTCCAAGCTGCAAAGCAGGCA GCGAGTGGGAAAGCCGGGCGCTTTGTGTACGTGTCTGTGTCGCACCTGGT GCCGGAGGCTTTCGGGGGGGCTGCTTTCAAAGGGTGAGCGCTCCTTGTCC CTGTCACGCCAGATATCACCAACGCGTTGATGTACGCCTGACAATGTGTG CGTGAGGGAGAAGGATTTTTCCGTAGGTGGTCTAGCGTTTCAACAAGGTT CGAGAACGGCCATTGTTGTCGACCAGCACCCACCTCAAAGAGGTAACCTT GGCAACCTGAGAAACAAGTTGCCTTACCACAGTTCCGGCGTGTTGATCAA CACTTGAGAACAACCCTTACCATCTTTCTGGCTCGCTTGGGTGATGTTCT TCCTTGTTTTTGTCCTCGCTACAACGCACGTACGTGTTCGAGCACGCGGT CTCGATTGTCGTGTCAGATGTTATTACATGCGTGCGTCTCCGACACTTGA TCGCCATGTACGCATCACAGGTACTTCGACGGTAAGAGTCGCGCGGAGGA GGCCATCGCCAAGTCCTTCCCGTCTACCGGAGTTCTGATCAAGCCAACCT TCATCTACGGCGGGGAATCGTTCGGCCTAACCCCCCCTAGGGTTTCGGAC GGCTACGGGTCAGGGATAGACGCCCTCCTTTCCTCCGGCCCCATTCGAGC TATCGCCGGCGTCGCCCCGGGCCTCATCAAGGTGCGAGGGGTGCCACATT GGCTCGGTATTGATTGCGTTTGGCATCTTGTTTTCCTCCCCCATCTTTCC TCATGCACGTTCCTCGTTCCTCGTGCTTGGTGTTTGTCGGGAGGCCTTCT GTGCCTGGATGGAGTAGTCGCGATTGTTGCTGCGGGATGTGCCCTTGATG GAGGGGAGTAGCTGCTCGCGTTGTTTCTGTGGATCTGTCACGAGCGACGA CAATGGCCATCATTGCGACTGCATGCCAAGTGCTGAGGTTCTGATGGAGT ACTTACCCGTTGCTCCTGGCGCTCAAGCATCGCTGTGGATTCGCCCGGTC GTTTGGCTTTGTTTTTTCACTTTTTTCTTGCCTTGTTGGAACTGCAAACT TGCTTCAGGTTGCGCTTTCGCCACCGGTATCGAGGGACAACGTCGCGCTA GCCTGCGTTGCTGGGGCGTTGGGGCGGCTACAAGGGACGAACTTCGACGG AGCGGACGAGATCAACGCAGCGGCATCGAAGGCGTGATTACTTTTCTCGC GTGAAGGCCATCGCCGCCGACAGCATGACCGAATACGATCTGCCCGTGGA AAATATGCTAGCAAGTTCACTCAGAGAGAGAGAAAAGGTCCCCGCAGTTT TCTGATT
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Coding sequence (CDS) from alignment at Scaffold_344:73676..79432+

>EsuBft103_8a-0001 ID=EsuBft103_8a-0001|Name=EsuBft103_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1026bp|location=Sequence derived from alignment at Scaffold_344:73676..79432+ (Ectocarpus subulatus male Bft15b)
ATGCTGCGCCTTACCGTCCTAGCAGCCTTCATGGCGGGTTGCAGCTCGTT
CCTAGTCCCACCTGTGTTGCTGCGACCGCCGATCATGGAAACCAGCAAAG
GAGCACTGCACATGACGCAGAACAACGACGACATGGCCGACTCGGACTAC
TCTGGGTTGTCTGCTGGACCCTTCGACAGGCGCACCCTCCTGACGGCTAT
TCCCGCGACTGTTGTGGCAGGGGTTCTTGGCGTGGCAGTGGCGGGTTCGG
CACCAGAGAAAGCACTGGCGAGAGCTACGCCGAAGGCCGCGCCGGCCGGG
ACGAACGTCGTGGTTCTCGGCGGCAACGGTTTCGTTGGAAGCAAAGTCTG
CGAACTTCTGGTCGAGGCCGGAGCAACCGTCACAAGCGTGAGCCGTAGTG
GCTCCAAGCCCGACAAGTGGGCAGCAGGGCAGAGCTGGATGGACAAAGTG
TCGTGGACGAAGGGAGACCCGACAGCCGGGGACCTATCTGCCGTCTTCAG
CAAGGCGGCGGCAGTGATATCGTGCGTAGGGGTGATCGGGGGAAGCGACG
AAGAGATGGAAAAGGGAAACGGAGATGTCAACGTCCAAGCTGCAAAGCAG
GCAGCGAGTGGGAAAGCCGGGCGCTTTGTGTACGTGTCTGTGTCGCACCT
GGTGCCGGAGGCTTTCGGGGGGGCTGCTTTCAAAGGGTACTTCGACGGTA
AGAGTCGCGCGGAGGAGGCCATCGCCAAGTCCTTCCCGTCTACCGGAGTT
CTGATCAAGCCAACCTTCATCTACGGCGGGGAATCGTTCGGCCTAACCCC
CCCTAGGGTTTCGGACGGCTACGGGTCAGGGATAGACGCCCTCCTTTCCT
CCGGCCCCATTCGAGCTATCGCCGGCGTCGCCCCGGGCCTCATCAAGGTT
GCGCTTTCGCCACCGGTATCGAGGGACAACGTCGCGCTAGCCTGCGTTGC
TGGGGCGTTGGGGCGGCTACAAGGGACGAACTTCGACGGAGCGGACGAGA
TCAACGCAGCGGCATCGAAGGCGTGA
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