EsuBft103_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_4a-0001
Unique NameEsuBft103_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:45523..46979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft103_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length77
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_4aEsuBft103_4aEctocarpus subulatus male Bft15bgeneScaffold_344 45523..46979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_4a-0001EsuBft103_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 45627..45779 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_4a-0001-exonagat-exon-323Ectocarpus subulatus male Bft15bexonScaffold_344 45523..46221 +
EsuBft103_4a-0001-exonEsuBft103_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 46908..46979 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_4a-0001-exonagat-five_prime_utr-243Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 45523..45626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_4a-0001-cdsEsuBft103_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 45627..45779 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_4a-0001-exonagat-three_prime_utr-390Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 45780..46221 +
EsuBft103_4a-0001-exonagat-three_prime_utr-391Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 46908..46979 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_4a-0001 ID=EsuBft103_4a-0001|Name=EsuBft103_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_344:45523..46979+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGACCAACCAATGAAATTACACGGAACCGTCGGAACCTCCCGAAAAGAC
CTTAGGACGCACCCGCGCGAGGGCGCGGCTCGCCTGTGTGCTTTGCGCCC
TGCTATGGGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACA
TGCCTCATGACACACCCGAGCAGCAGCCGGGCGGTGAAGCCACGCAGATA
CCTGCCGCCGCCGCCGCTGCTGCTGAAAAAAACAGCAGCAGCAGCAGCAG
CAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCGCACCTC
GATTTTTTTTTTTTGGAGGGTCTGCTGGTGTGGGCGCTGCAGCCCCACTG
GAGGGGCCGTCTTCAGACATGTAGATCTCGTGGTTGGCTGATGCGATTCG
GATGCGGTTTGTTGTGTGGTATAGCTGTAAACCCAAGGTAGAGGGCTGTA
TTTCTAAGCTCTCTTTTTCGAGAGGAGCAACGGTCGCCTTGGGCGTGGAG
CAAAGAGCCCAAAAAACATGATTTTTGGTGTTGTTCGTCCGCCCTTTAAC
TTGAAGAGAAAACCGAGCTTGCAGTCACCTCTATTGGACCTGTGTCCAGG
TGTGTGTAACGCATGAAGAGCCATGCTGCTGTCTGGACGCAGAGCTGCCT
GCACAAACAAATTGGATTGAT
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protein sequence of EsuBft103_4a-0001

>EsuBft103_4 ID=EsuBft103_4|Name=EsuBft103_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=51bp
MGHSTTPLRGPTLEHMPHDTPEQQPGGEATQIPAAAAAAAEKNSSSSSSS
X
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mRNA from alignment at Scaffold_344:45523..46979+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_4a-0001 ID=EsuBft103_4a-0001|Name=EsuBft103_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1457bp|location=Sequence derived from alignment at Scaffold_344:45523..46979+ (Ectocarpus subulatus male Bft15b)
TCGACCAACCAATGAAATTACACGGAACCGTCGGAACCTCCCGAAAAGAC
CTTAGGACGCACCCGCGCGAGGGCGCGGCTCGCCTGTGTGCTTTGCGCCC
TGCTATGGGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACA
TGCCTCATGACACACCCGAGCAGCAGCCGGGCGGTGAAGCCACGCAGATA
CCTGCCGCCGCCGCCGCTGCTGCTGAAAAAAACAGCAGCAGCAGCAGCAG
CAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCGCACCTC
GATTTTTTTTTTTTGGAGGGTCTGCTGGTGTGGGCGCTGCAGCCCCACTG
GAGGGGCCGTCTTCAGACATGTAGATCTCGTGGTTGGCTGATGCGATTCG
GATGCGGTTTGTTGTGTGGTATAGCTGTAAACCCAAGGTAGAGGGCTGTA
TTTCTAAGCTCTCTTTTTCGAGAGGAGCAACGGTCGCCTTGGGCGTGGAG
CAAAGAGCCCAAAAAACATGATTTTTGGTGTTGTTCGTCCGCCCTTTAAC
TTGAAGAGAAAACCGAGCTTGCAGTCACCTCTATTGGACCTGTGTCCAGG
TGTGTGTAACGCATGAAGTGCCATGCTGCTGTCTGGACGCAGAGCTGCCT
GTACAAACGAATTGACTTGATGTATAGTTTATTCAGTATTAACAGCGGGA
TTCTCAAGAACAAAAAAAAAGAGCCAAATCCGCCTGCCCCCCTCAAATTT
TGCCGAATGGACCGGACGTTTTTTCGGCCCCAAATTCCGCCGCTTTAACA
CCCCGAACTGTGACCCGTCAACATTTGCGGGCTCTCAAATGAAGAAAAGC
TCCACCCAATGTCCGCGGGGGTGGTGTCGAAGGTACCCGCGGTCCTTGAT
CTAATAGTGGTGTTCTGGAACGTGATATGTGTTTCCGCGCTCGTGCGAAG
AGAATATCATGGCCGCGTGGGTCTTAGACGATTTTGGGTTTGGAAGAGGC
AAGGCAAGTGATTAATGAAGTAAGGTAAGTGCTGGCGTTCGTCACATGTA
ATAGTTTCGCCGATGAGGCTCAAAACTTGTTGACAGGATGGAAATAATTC
CTTCCGTAAGCTTATGTCTGCAGGAATTCGACTTCATAATTGACGAGGGA
AAGAATTGACTGGATCCTTCTCGCGATAAACCTCAGAGGCAAGAACCGCC
GAAAGAAGGAGGACAAAAAAAATCTTGGGTGACCCCGGCTAGTGGGTCAA
AATTCTACAGTCACCTCTATTGGACCTGTGTCCAGGTGTGTGTAACGCAT
GAAGAGCCATGCTGCTGTCTGGACGCAGAGCTGCCTGCACAAACAAATTG
GATTGAT
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Coding sequence (CDS) from alignment at Scaffold_344:45523..46979+

>EsuBft103_4a-0001 ID=EsuBft103_4a-0001|Name=EsuBft103_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_344:45523..46979+ (Ectocarpus subulatus male Bft15b)
ATGGGGCACAGCACAACACCATTGCGCGGTCCCACTCTAGAACACATGCC
TCATGACACACCCGAGCAGCAGCCGGGCGGTGAAGCCACGCAGATACCTG
CCGCCGCCGCCGCTGCTGCTGAAAAAAACAGCAGCAGCAGCAGCAGCAGC
NNN
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