EsuBft103_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft103_3a-0001
Unique NameEsuBft103_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_344contigScaffold_344:42204..44693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G708
ProteomeIdEsuBft103_3
Protein domainsPF09335
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsPTHR12677
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Notetvp38 tmem64 family membrane protein slr0305 os:synechocystis (strain pcc 6803 kazusa) gn:slr0305 pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length947
Hectar predicted targeting categorysignal peptide
Evalue2.75e-179
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011530.1
Date last modified2016-06-13
Date creation2016-06-13
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft103_3aEsuBft103_3aEctocarpus subulatus male Bft15bgeneScaffold_344 42204..44693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_3a-0001EsuBft103_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_344 42230..44672 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_3a-0001-exonEsuBft103_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_344 42204..42824 -
EsuBft103_3a-0001-exonagat-exon-322Ectocarpus subulatus male Bft15bexonScaffold_344 43189..43234 -
EsuBft103_3a-0001-exonagat-exon-320Ectocarpus subulatus male Bft15bexonScaffold_344 43659..43848 -
EsuBft103_3a-0001-exonagat-exon-321Ectocarpus subulatus male Bft15bexonScaffold_344 44604..44693 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_3a-0001-exonagat-three_prime_utr-389Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_344 42204..42229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_3a-0001-cdsEsuBft103_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_344 42230..42824 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft103_3a-0001-exonagat-five_prime_utr-242Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_344 44673..44693 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft103_3a-0001 ID=EsuBft103_3a-0001|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=947bp|location=Sequence derived from alignment at Scaffold_344:42204..44693- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACCTGGCTAGACGGTGAGAACATGCTCGCATTCATCGTGATATTCATCGT
CTTCGGGGCCCTGTCCATCGTCATGCTGCTGCCGCAAACGGTGCTCTTCC
TGGCGGCGGGCTACGCGTGTGCAGACCGCCTCCGTAACCAGTACCTGGCG
TTCGCCGTGGCGTTGAACCTGTCCCTGGTCACCTTCATCATCGGAGCATC
CATCGCCTTCCTGCTGGCCAGGAGTGTTCTACCGCCTTCGTGCACGCGCA
AGTTCTTCAAGCACTTCGCCATCCTCGAAGGCCTGGACCATGCTCTCCAG
CACAAAGGGCGCCGAATCATTTTCTTGTTGCGCATCAATCCCATGTCGCC
CTACAACGCGCTGAACTACGGGCTCGGTCTCAGCTCTTGCACGTTCCGAG
CTTACCTGCAGGGGATGGTGGGCGCGTTCCCTTTCACGTGCATCGCCGTG
TACGCCGGGATGCTCATTAGCAGCGTGGACGACATTGACTCGCTCTTCAC
CTACACGAGCACCGGTTGGTACTGCGTCTACGCGGCCCTGGGCGTGGCCT
GCGTCGTGTCCTTCGTGGCCATCGTCCGCTACACCTCGGCCGAGATGAAG
GCCGCCGTGCGCTCGGCGCCAAGACCCGCTGGTGGGGACAGGGTCGACGG
GGAGGAAGAGTTCGGGGAGCTTCCGCCGGACTCTACCATGTTCGGGACGT
TCACGTCTCGGTCGGAGTGTTACGGCGGCGAGGAGGGGCGCGGAGGAAAT
GCCGGTGCGGGAGGCGATGAGAAGGAAGAGGGGGAAGCGATGGAGACCTT
CGACGAGATTGTAGTTGCAAGAGCGCCGTTGTTAGGCGGGGACCCACGCC
GGAAAAACGGCGTCGCGGCGGAAAGAACGAGTAAGAGAGCTGCACGGTTA
TTTCCGGTTGTTGATGTTTGAGCGTAGAAAGAGCGGGGCTTGTCGAT
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protein sequence of EsuBft103_3a-0001

>EsuBft103_3 ID=EsuBft103_3|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MLAFIVIFIVFGALSIVMLLPQTVLFLAAGYACADRLRNQYLAFAVALNL
SLVTFIIGASIAFLLARSVLPPSCTRKFFKHFAILEGLDHALQHKGRRII
FLLRINPMSPYNALNYGLGLSSCTFRAYLQGMVGAFPFTCIAVYAGMLIS
SVDDIDSLFTYTSTGWYCVYAALGVACVVSFVAIVRYTSAEMKAAVRSAP
RPAGGDRVDGEEEFGELPPDSTMFGTFTSRSECYGGEEGRGGNAGAGGDE
KEEGEAMETFDEIVVARAPLLGGDPRRKNGVAAERTSKRAARLFPVVDV
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mRNA from alignment at Scaffold_344:42204..44693-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft103_3a-0001 ID=EsuBft103_3a-0001|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2490bp|location=Sequence derived from alignment at Scaffold_344:42204..44693- (Ectocarpus subulatus male Bft15b)
ACCTGGCTAGACGGTGAGAACATGCTCGCATTCATCGTGATATTCATCGT
CTTCGGGGCCCTGTCCATCGTCATGCTGCTGCCGCAAACGGTACGTGTAT
GGAGCCGTTTGTGTGTGTGCCGTCCCTGCGCTTGGGATGTTCTCTGTGAA
CCCCCGTTGTGATTTTTTTCTGATCCGAACGCGAGTGATCTGCATGCAAG
TCACGAGAGAGGAGTCTAGACGGTGGATGTACACAAGTGAATGTACTCGT
CTTTTGGAGTGTAGGTGCTGTGCTGTTCGTCCGCCCGTTTTGTTCCCACG
CTGATATCGACGTCTACAGCAGTGTTGCCTCATCTACGTGTCGGTTGTGA
AACTGTGTGCTCTTGTGTGCCTAAAACATTGTACGTGTCTCTCATGAGCT
TTACTTCAAGCACATACGTCGCGTGCCCTCAAACGTACATGGGAGAGAAG
TCGGTGTCGTTTCGCTGTTGCCCACCGACGCTGACACAGCTTACTTCGCA
CGCTAGGTTTATCTGCACTGAAGCTAGTGCGCTCGACCCTGGAGGTACTT
TTGATTTGTTGCACACGCATCCTCTTGTTGGCTTTGGCGTTTTGGTGAAT
CAAACCCCTCAATGACTTGCGGGGAGAACCGACATTGCCTCTCGCCCGTC
ATCTCGTCTTGTCTTTGTTCCGCATGGGGCGAAAAAATCCTCAACCGACA
GACTTAATGTGGAAGCACGTGTGGTTGGCGTGTCTGCGGGTCAACCACGA
TTCCGGAGCAAGGCTTGGAATTCCGACCGACGTCGTACTTGCGCAAGCAA
CTCAACCAAAACCAACCCCATTCTGACCGTGTGTTTGTTTTACAGGTGCT
CTTCCTGGCGGCGGGCTACGCGTGTGCAGACCGCCTCCGTAACCAGTACC
TGGCGTTCGCCGTGGCGTTGAACCTGTCCCTGGTCACCTTCATCATCGGA
GCATCCATCGCCTTCCTGCTGGCCAGGAGTGTTCTACCGCCTTCGTGCAC
GCGCAAGTTCTTCAAGCACTTCGCCATCCTCGAAGGTGATGAAGGAGGCG
CCGGCGCCGCGAATACATTTATTTTTTGCGTGTTGGGTGGTGGTGCTGCC
TCCCGGGCATGCCCATCTTCGGCCGGGTTCGGGCATTTGTTCCCGAGAGA
AATTCATTCCATCGATCGAAAGCGGAAGTTTTATTTTGATATAAGCACCG
CCGTGTTTTTCCCGCCACAACGGACGGATATCCGTCATGATAGTGATGCG
ATACGAATTTTGTGGTGTTTTGTGTGAACCATCGTCCCGAAACGCTTCGC
CGCAGCACTACACGGACACCCGAGCCATCGCTCGGAGAGGGATATCCGTA
CGTGTCTGGCCATGTGCGCGCACTATTTAATCTGCAGTGTCTTATCCTCT
CCCCTCCTCCGTGATACACCCCCTGCCACACGCTATATTCCTGTGTCGTA
TTATCACAGGCCTGGACCATGCTCTCCAGCACAAAGGGCGCCGAATCATT
TTCTTGTGAGTGGAAATGTATGCTGCGAAGTATTCGTTTCGAATTGGTCT
CAGCAGCAGTGTACAAAGTATGTGCGAGGGAGTATAATTTTTTCGCCGCT
TGCCCCGTCGGGGTACTGCGCCTGTTGGTTTGCTTCAACACCGCACGCGT
CCTCGGTTTCCTATGTGTTGACTTGCCTACCGAGCGATCAGGCCCTTGTT
GAGGCGCGGATGGTTTCGTCTCACACCACCTCGGAACAACCAAAGCCTGA
CCAACAATCTGGCCGAAGTCAACTAAGTTCACAAGAGTTTTTTTTTCCCG
GATTGAGCCCTTGCCTGTCCCGCGTCATCGAAACACCGCTTCGCCACCAC
CCCCGGCACGCGCCGCCAGGTTGCGCATCAATCCCATGTCGCCCTACAAC
GCGCTGAACTACGGGCTCGGTCTCAGCTCTTGCACGTTCCGAGCTTACCT
GCAGGGGATGGTGGGCGCGTTCCCTTTCACGTGCATCGCCGTGTACGCCG
GGATGCTCATTAGCAGCGTGGACGACATTGACTCGCTCTTCACCTACACG
AGCACCGGTTGGTACTGCGTCTACGCGGCCCTGGGCGTGGCCTGCGTCGT
GTCCTTCGTGGCCATCGTCCGCTACACCTCGGCCGAGATGAAGGCCGCCG
TGCGCTCGGCGCCAAGACCCGCTGGTGGGGACAGGGTCGACGGGGAGGAA
GAGTTCGGGGAGCTTCCGCCGGACTCTACCATGTTCGGGACGTTCACGTC
TCGGTCGGAGTGTTACGGCGGCGAGGAGGGGCGCGGAGGAAATGCCGGTG
CGGGAGGCGATGAGAAGGAAGAGGGGGAAGCGATGGAGACCTTCGACGAG
ATTGTAGTTGCAAGAGCGCCGTTGTTAGGCGGGGACCCACGCCGGAAAAA
CGGCGTCGCGGCGGAAAGAACGAGTAAGAGAGCTGCACGGTTATTTCCGG
TTGTTGATGTTTGAGCGTAGAAAGAGCGGGGCTTGTCGAT
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Coding sequence (CDS) from alignment at Scaffold_344:42204..44693-

>EsuBft103_3a-0001 ID=EsuBft103_3a-0001|Name=EsuBft103_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_344:42204..44693- (Ectocarpus subulatus male Bft15b)
ATGCTCGCATTCATCGTGATATTCATCGTCTTCGGGGCCCTGTCCATCGT
CATGCTGCTGCCGCAAACGGTGCTCTTCCTGGCGGCGGGCTACGCGTGTG
CAGACCGCCTCCGTAACCAGTACCTGGCGTTCGCCGTGGCGTTGAACCTG
TCCCTGGTCACCTTCATCATCGGAGCATCCATCGCCTTCCTGCTGGCCAG
GAGTGTTCTACCGCCTTCGTGCACGCGCAAGTTCTTCAAGCACTTCGCCA
TCCTCGAAGGCCTGGACCATGCTCTCCAGCACAAAGGGCGCCGAATCATT
TTCTTGTTGCGCATCAATCCCATGTCGCCCTACAACGCGCTGAACTACGG
GCTCGGTCTCAGCTCTTGCACGTTCCGAGCTTACCTGCAGGGGATGGTGG
GCGCGTTCCCTTTCACGTGCATCGCCGTGTACGCCGGGATGCTCATTAGC
AGCGTGGACGACATTGACTCGCTCTTCACCTACACGAGCACCGGTTGGTA
CTGCGTCTACGCGGCCCTGGGCGTGGCCTGCGTCGTGTCCTTCGTGGCCA
TCGTCCGCTACACCTCGGCCGAGATGAAGGCCGCCGTGCGCTCGGCGCCA
AGACCCGCTGGTGGGGACAGGGTCGACGGGGAGGAAGAGTTCGGGGAGCT
TCCGCCGGACTCTACCATGTTCGGGACGTTCACGTCTCGGTCGGAGTGTT
ACGGCGGCGAGGAGGGGCGCGGAGGAAATGCCGGTGCGGGAGGCGATGAG
AAGGAAGAGGGGGAAGCGATGGAGACCTTCGACGAGATTGTAGTTGCAAG
AGCGCCGTTGTTAGGCGGGGACCCACGCCGGAAAAACGGCGTCGCGGCGG
AAAGAACGAGTAAGAGAGCTGCACGGTTATTTCCGGTTGTTGATGTTTGA
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