EsuBft103_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft103_2a-0001
Unique Name	EsuBft103_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_344	contig	Scaffold_344:29956..34111 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft103_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	195
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-01_011570.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft103_2a	EsuBft103_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_344 29956..34111 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_2a-0001	EsuBft103_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_344 29982..33584 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_2a-0001-exon	EsuBft103_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 29956..30838 +
EsuBft103_2a-0001-exon	agat-exon-319	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 32781..33015 +
EsuBft103_2a-0001-exon	agat-exon-318	Ectocarpus subulatus male Bft15b	exon	Scaffold_344 33276..34111 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_2a-0001-exon	agat-five_prime_utr-241	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_344 29956..29981 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_2a-0001-cds	EsuBft103_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_344 29982..30838 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft103_2a-0001-exon	agat-three_prime_utr-388	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_344 33585..34111 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_344:29956..34111+
coding sequence from alignment at Scaffold_344:29956..34111+

spliced messenger RNA

>EsuBft103_2a-0001 ID=EsuBft103_2a-0001|Name=EsuBft103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1954bp|location=Sequence derived from alignment at Scaffold_344:29956..34111+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAACGGTTGAACCATCATGCATGACGACAACGAAGCGAGCCGGA
CAGACCCGTGCAGCCCCATGCGAACACTTCAGAGGGGAGCACAGCAGTTG
CAACGAGTCTGACGGCAGTGCCTCGAGGATAGCAGTCATGGAGGGAGCGT
CATTTTTCGCCGATGCATTTCTAACCGCTAGTCGCTGCGGAGATGCCCCA
CGGGAACCACGGGAGGTGCAGCTGGTTCCGTTTGTGCGCAACCGCACACA
GCTCACCAGCAGCAAGGACGAAGGAGAAGACCGACTCATCCAGGACTTCG
GTCCAGGTCGGCGCGTTCATGAAGCCAAGGACATGGATGAAGTGGGAGCA
GCGGGGAGGGGCACCGACTGCTTCGATCTTTCTGTGAAGAACTGGCATCG
ATACGTTGCTGCTGTTGGCGACCGTGGTCGGCGCGTTGTGTTCGATCCGA
CGGAGATGGCTAGACTGTTGCAGCCAAGTGGAAGCGGCATAGACTCTCTG
TGGAGAATGGAGAAGTTGATCGAAACGACGCTCGAACAGGAAACGCCTGG
AGGCGAGACGCTCTTGATACTAAAAGCGGTGACCGACGCGTTCTTCGTCG
CGTCACGAGCTGTCGACGATGATTCCGCCGCCATTTGGAGTTACGGCGGG
GCGCTTAGCGGGGACAAGGAGCGAGACCTTCTTGTACCAGCATTGAGACA
AGCCTGGGAGCACGCCGTGATGCATAGGAACGGCAGCCCTAACGAGTGGC
ATTCCTCAGTGGATTTGCACGTAACAGCAGCCTGGTTTCAGGCTTGGGAG
GCCGCGTATCAGGTTGAGGACGTGTTGCCTGCGAACTGGACTTGGGTACT
GGAACAGCTGGAATCGCAGGAAACTTCGGAAGGTCCCCACATAGAGGGAG
AGCTGGTGCTGGAAGCGGTCGAGGGGCTACAGCTGGGGCTACCCCCAGAG
AACTGGTCGCTGGATGATGTCAAGAGGTCTTTGCTGCTCGTGAGCGACGA
GCGCTGGTTTCGAGAGGGACAAGCGATGGTGGACCTCAGATTATTCGGCC
CAACTCGCGAGAGTACTTTCAGGAGGGTGTTCTTCGACGTACCCGGAGCT
TTTGATGGCTGTCTCAAGGACCGAGCCGGGGTGGCCTTGATTCCGCCAAC
GTTTAGAATGTACACGGCGGGCGACATTTTCGATGCTTTCGGGCACGATG
CCGTGGTGAGGTCTCGAGACATCGCCAGCGGAGAAACTTCGAGGAGAGCA
GCACTCGAAGAGGTCGAGTGCAGCAGCAGCGACGACTCGAGCAGCACAGC
TAACGACACCTCCGGGAGTGTAACGGCCGGGCCGCGGCGGGAGGTTGCTA
TTGCAGAGATCCAGGTTACCTGGGTGGATGGATACACGCATGTGCTGGGC
TGGCTGGACTCTAACGTGGTGTCCTGAACTGGCAAGCATGCGTCATGAGC
GGCAAAGGGGTAGTTAATTTCTGTGAATTGTATGTATGCCCTCTTACAGC
GGGTCGGCTTTTGTTCTTCGTTGCTTTGCATGAATTGTCGAACCGGGTAC
GTGGATATGACCAAAATCTTCGTTCCACATGTTATCTGGGTACTCGGTCG
ATGTGCTGCGGTCTGTCTACATTTGCCCTGCCTATTTCCGCTGAAAACTA
CTTCGGTGGTATAGATTTCGCCAGCCGTGCCCCCTCACGAGGACTCAGGA
CATTGATCCAGGCTTTCTGTGTGGCTCTTGAGGTAGATTCTTGTTTTTCT
CCGAGCGGTGTCATTTAGCTCCTCTATGTTTGCTGACGTCTCTTTGATTA
CCCGCCCACAAGTTCTCCTAACCTGTGGTGAACTACTGCTTGTAAACTCC
TGCACTTTGTCGAGAGTTTGGTCGCCTACACATGTATTTCGGCGAAGTCC
GTAGCGGTGCTTCGCTCACAAAAAGGCAGCAGGGACGCAAAGGCGTAAAG
ATTT

protein sequence of EsuBft103_2a-0001

>EsuBft103_2 ID=EsuBft103_2|Name=EsuBft103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=466bp
MTTTKRAGQTRAAPCEHFRGEHSSCNESDGSASRIAVMEGASFFADAFLT
ASRCGDAPREPREVQLVPFVRNRTQLTSSKDEGEDRLIQDFGPGRRVHEA
KDMDEVGAAGRGTDCFDLSVKNWHRYVAAVGDRGRRVVFDPTEMARLLQP
SGSGIDSLWRMEKLIETTLEQETPGGETLLILKAVTDAFFVASRAVDDDS
AAIWSYGGALSGDKERDLLVPALRQAWEHAVMHRNGSPNEWHSSVDLHVT
AAWFQAWEAAYQVEDVLPANWTWVLEQLESQETSEGPHIEGELVLEAVEG
LQLGLPPENWSLDDVKRSLLLVSDERWFREGQAMVDLRLFGPTRESTFRR
VFFDVPGAFDGCLKDRAGVALIPPTFRMYTAGDIFDAFGHDAVVRSRDIA
SGETSRRAALEEVECSSSDDSSSTANDTSGSVTAGPRREVAIAEIQVTWV
DGYTHVLGWLDSNVVS

mRNA from alignment at Scaffold_344:29956..34111+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft103_2a-0001 ID=EsuBft103_2a-0001|Name=EsuBft103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4156bp|location=Sequence derived from alignment at Scaffold_344:29956..34111+ (Ectocarpus subulatus male Bft15b)
ATGGTTGAACGGTTGAACCATCATGCATGACGACAACGAAGCGAGCCGGA
CAGACCCGTGCAGCCCCATGCGAACACTTCAGAGGGGAGCACAGCAGTTG
CAACGAGTCTGACGGCAGTGCCTCGAGGATAGCAGTCATGGAGGGAGCGT
CATTTTTCGCCGATGCATTTCTAACCGCTAGTCGCTGCGGAGATGCCCCA
CGGGAACCACGGGAGGTGCAGCTGGTTCCGTTTGTGCGCAACCGCACACA
GCTCACCAGCAGCAAGGACGAAGGAGAAGACCGACTCATCCAGGACTTCG
GTCCAGGTCGGCGCGTTCATGAAGCCAAGGACATGGATGAAGTGGGAGCA
GCGGGGAGGGGCACCGACTGCTTCGATCTTTCTGTGAAGAACTGGCATCG
ATACGTTGCTGCTGTTGGCGACCGTGGTCGGCGCGTTGTGTTCGATCCGA
CGGAGATGGCTAGACTGTTGCAGCCAAGTGGAAGCGGCATAGACTCTCTG
TGGAGAATGGAGAAGTTGATCGAAACGACGCTCGAACAGGAAACGCCTGG
AGGCGAGACGCTCTTGATACTAAAAGCGGTGACCGACGCGTTCTTCGTCG
CGTCACGAGCTGTCGACGATGATTCCGCCGCCATTTGGAGTTACGGCGGG
GCGCTTAGCGGGGACAAGGAGCGAGACCTTCTTGTACCAGCATTGAGACA
AGCCTGGGAGCACGCCGTGATGCATAGGAACGGCAGCCCTAACGAGTGGC
ATTCCTCAGTGGATTTGCACGTAACAGCAGCCTGGTTTCAGGCTTGGGAG
GCCGCGTATCAGGTTGAGGACGTGTTGCCTGCGAACTGGACTTGGGTACT
GGAACAGCTGGAATCGCAGGAAACTTCGGAAGGGTGAGAGAGAAAGAGCT
TTCGTAATCACGATGCATCTTTGTTCAGGTTGGATGCATGCACCACCGTG
CTACAGTGTACTTTCACGCCGTGTCTTCGTTCCCCGATGTAGCCTCCGTG
ATGTGTACACGGCGGGTGTTGTGTGATCCACAGCCGGATCATGGTCTACC
CCTAGAAAGGGCGGGAAAATTTTAAAATTTTAACGTTGTCGGACCCTTGG
CCCTTCTCGCCTGACTGCAATACCACATTTTATTGACCAGCAGTCTAGTA
TCCAGCAGTACTGTAGTTCAGCATGTTTCCATTAACATTCAATGCTGTAA
GAGTTCAACTTCAATCGTGGGGTATTTTTATTTTCGCCACAACTTTCGCA
GTTAAAACTCTGTGATTTCGTTATTGTAGAGGACCAATTCAAAAGTAGGG
TTGGGTACTGGCGCGCAGCGCCAGTACAAAGTATTCTGGCTGCTGCGCGA
TTTGGCTTCAGCATAAAAAGTGACTGATTTTGGCCCATCTGGCAGAGGCA
CTATCGCGGGGAAAACGATAGAAATTTCGAGTTCAACGACTGAATTTGTT
GGTTTTCGACATAAGGAAATATTTATCTAGAAATATTGAGATGTTACTCC
CCAGCAACCAAGTGACATCCATCAGTTGGGTTCATGAGCACGCCCTCGTA
TACTGGACTCTACAGCCCCTCTCTCGCAGAAACACGAAGGACTCTACGAA
GGACACAACGACCCGGCAGCCCTCAACGTATACCAAGAAACCAGCTAAGA
GCTAAGAAGCTAAAAAGGAAACGACTAGTCCATCTACTAGTCTACCTAGA
AACGACAGGATAAGTTGCGCAACAAACGAACCACCAGCTAGATAGAATGT
CCAAGTAGGAGATGAGAACAGCGCCAAAGATGCACAACCGAAACCTTAAC
CGCGCACGAATCACTGCCGCTAGCACCATAACAACAGGCAGAGACTTAGA
ATGGTGATTCTTTGCGCCACCAGCGACCTGTAGCAGAGAACCAAACTACG
ATCCAGCCCATCAAAGACAGCCACCATCAAAGGCAGCCACTACCCTAGCC
CCTCTTCGCGGCCGCGGGGGTGTTCGATTGTTCCGATAGATGGGTTTCCG
CTGGTTCTTGAGGCCCATTATTAAGGAAATCTGCGAATATTAGAATGTAC
TGGAGTACTGGCTGCTGACGCAGCCAGTGCACATGTGCTACCAGTGCATG
TGCACTGGCAGTACGTACTGGTTCAGCACCCAACCCTACCAATTTGTATT
TTCGAAGCATCCGCCTGATTTCTTGCCAAGGGCCGCGACTAGTTTCTAGT
CGGAATCCAAGAAAATAGGAGAGATTATATATCCCAAGAAGGTTCGGCTC
GCAGAGTTCCAACTGCACATCGGTATTATAGCACATCGTGGAGCACCCAC
ATGCGGGTTGGCAAGCACCCCCAACTAGATAATAAATATATCTGTTTTGG
GCTCTGCTGTGTCGAAGGTTGAAGCTAGCGGCGTACCGAAACGTTCCCAC
ATGTGAAACCAGTAGTGCGGGTTAACAGATAAAAGGATCACGGTATTGCA
GTTTACGAAGTACGTTGCTGTTGAACAAGAAGGGAACGAATATCGCGTGT
ATTTCCAGCTGTTTCCGTTGCTATTCTTCACATTAACAACCGTTTTGATA
TCTGCCCACTTCAAACATCCATACGGGTCCAACTGACGCCGCTGGCGCCT
TCGGTATTCACAGAGTAACTCACGCCAAGGATGGTACACAACAGCAGTAA
GAAAACTCTAAGAGAGACACATCGAACCTAGAGAATAATGATAAAACAAT
GCGCGGCACGAGCAGTACACTATGCTATAAACAAGCAGCGACATCCATGC
CGAAACGCCCCGCAACACTGACGTTGAAGTGCGGCGTTGTTCTGTGACTT
TCACACACGCCTGTCTTGATCGCAGTCCCCACATAGAGGGAGAGCTGGTG
CTGGAAGCGGTCGAGGGGCTACAGCTGGGGCTACCCCCAGAGAACTGGTC
GCTGGATGATGTCAAGAGGTCTTTGCTGCTCGTGAGCGACGAGCGCTGGT
TTCGAGAGGGACAAGCGATGGTGGACCTCAGATTATTCGGCCCAACTCGC
GAGAGTACTTTCAGGAGGGTGTTCTTCGACGTACCCGGAGCTTTTGATGG
CTGTCTCAAGGTACCTATGGCGTGGTTGTCCCAATATTTTCGTTCCCATT
TCCGTGACACTTCGGGAGTTGGTCTGTTCTGGATAGATAGTCACTGGGTA
GAGCACTTGATCGCCTTGGTGACAAAGTGGCGTGAGTCGACGGGAGGGGT
GTGTCCAGATCCCGAGTACTGCTGTACTTCGGAGGTGTCCTCTTCGCCTT
GCTACTACCTACTACTACCGATTGCGCGACACCCAGACATGCCTTTATTC
CTGACGGTCTTAAACATCAGGACCGAGCCGGGGTGGCCTTGATTCCGCCA
ACGTTTAGAATGTACACGGCGGGCGACATTTTCGATGCTTTCGGGCACGA
TGCCGTGGTGAGGTCTCGAGACATCGCCAGCGGAGAAACTTCGAGGAGAG
CAGCACTCGAAGAGGTCGAGTGCAGCAGCAGCGACGACTCGAGCAGCACA
GCTAACGACACCTCCGGGAGTGTAACGGCCGGGCCGCGGCGGGAGGTTGC
TATTGCAGAGATCCAGGTTACCTGGGTGGATGGATACACGCATGTGCTGG
GCTGGCTGGACTCTAACGTGGTGTCCTGAACTGGCAAGCATGCGTCATGA
GCGGCAAAGGGGTAGTTAATTTCTGTGAATTGTATGTATGCCCTCTTACA
GCGGGTCGGCTTTTGTTCTTCGTTGCTTTGCATGAATTGTCGAACCGGGT
ACGTGGATATGACCAAAATCTTCGTTCCACATGTTATCTGGGTACTCGGT
CGATGTGCTGCGGTCTGTCTACATTTGCCCTGCCTATTTCCGCTGAAAAC
TACTTCGGTGGTATAGATTTCGCCAGCCGTGCCCCCTCACGAGGACTCAG
GACATTGATCCAGGCTTTCTGTGTGGCTCTTGAGGTAGATTCTTGTTTTT
CTCCGAGCGGTGTCATTTAGCTCCTCTATGTTTGCTGACGTCTCTTTGAT
TACCCGCCCACAAGTTCTCCTAACCTGTGGTGAACTACTGCTTGTAAACT
CCTGCACTTTGTCGAGAGTTTGGTCGCCTACACATGTATTTCGGCGAAGT
CCGTAGCGGTGCTTCGCTCACAAAAAGGCAGCAGGGACGCAAAGGCGTAA
AGATTT

Coding sequence (CDS) from alignment at Scaffold_344:29956..34111+

>EsuBft103_2a-0001 ID=EsuBft103_2a-0001|Name=EsuBft103_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1401bp|location=Sequence derived from alignment at Scaffold_344:29956..34111+ (Ectocarpus subulatus male Bft15b)
ATGACGACAACGAAGCGAGCCGGACAGACCCGTGCAGCCCCATGCGAACA
CTTCAGAGGGGAGCACAGCAGTTGCAACGAGTCTGACGGCAGTGCCTCGA
GGATAGCAGTCATGGAGGGAGCGTCATTTTTCGCCGATGCATTTCTAACC
GCTAGTCGCTGCGGAGATGCCCCACGGGAACCACGGGAGGTGCAGCTGGT
TCCGTTTGTGCGCAACCGCACACAGCTCACCAGCAGCAAGGACGAAGGAG
AAGACCGACTCATCCAGGACTTCGGTCCAGGTCGGCGCGTTCATGAAGCC
AAGGACATGGATGAAGTGGGAGCAGCGGGGAGGGGCACCGACTGCTTCGA
TCTTTCTGTGAAGAACTGGCATCGATACGTTGCTGCTGTTGGCGACCGTG
GTCGGCGCGTTGTGTTCGATCCGACGGAGATGGCTAGACTGTTGCAGCCA
AGTGGAAGCGGCATAGACTCTCTGTGGAGAATGGAGAAGTTGATCGAAAC
GACGCTCGAACAGGAAACGCCTGGAGGCGAGACGCTCTTGATACTAAAAG
CGGTGACCGACGCGTTCTTCGTCGCGTCACGAGCTGTCGACGATGATTCC
GCCGCCATTTGGAGTTACGGCGGGGCGCTTAGCGGGGACAAGGAGCGAGA
CCTTCTTGTACCAGCATTGAGACAAGCCTGGGAGCACGCCGTGATGCATA
GGAACGGCAGCCCTAACGAGTGGCATTCCTCAGTGGATTTGCACGTAACA
GCAGCCTGGTTTCAGGCTTGGGAGGCCGCGTATCAGGTTGAGGACGTGTT
GCCTGCGAACTGGACTTGGGTACTGGAACAGCTGGAATCGCAGGAAACTT
CGGAAGGTCCCCACATAGAGGGAGAGCTGGTGCTGGAAGCGGTCGAGGGG
CTACAGCTGGGGCTACCCCCAGAGAACTGGTCGCTGGATGATGTCAAGAG
GTCTTTGCTGCTCGTGAGCGACGAGCGCTGGTTTCGAGAGGGACAAGCGA
TGGTGGACCTCAGATTATTCGGCCCAACTCGCGAGAGTACTTTCAGGAGG
GTGTTCTTCGACGTACCCGGAGCTTTTGATGGCTGTCTCAAGGACCGAGC
CGGGGTGGCCTTGATTCCGCCAACGTTTAGAATGTACACGGCGGGCGACA
TTTTCGATGCTTTCGGGCACGATGCCGTGGTGAGGTCTCGAGACATCGCC
AGCGGAGAAACTTCGAGGAGAGCAGCACTCGAAGAGGTCGAGTGCAGCAG
CAGCGACGACTCGAGCAGCACAGCTAACGACACCTCCGGGAGTGTAACGG
CCGGGCCGCGGCGGGAGGTTGCTATTGCAGAGATCCAGGTTACCTGGGTG
GATGGATACACGCATGTGCTGGGCTGGCTGGACTCTAACGTGGTGTCCTG
A