Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 160860.XP_007358330.1 |
| ProteomeId | EsuBft1003_4 |
| Protein domains | IPR013103 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 4751|Fungi |
| Length | 753 |
| Evalue | 5.2e-24 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,22B2X@155619|Agaricomycetes,3H6HR@355688|Agaricomycetes incertae sedis |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006259 |
| GO | 0003676 |
| GO | 0005515 |
| EC | 3.1 |
| GO | 0016779 |
| GO | 0004518 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1003_4a-0001 ID=EsuBft1003_4a-0001|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=753bp|location=Sequence derived from alignment at Scaffold_340:850517..851786+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTGTTNCATTGACTTTGGAGAGTTGTACGTGCCTACCGTTTCTGTTTC
ATGTGTGGGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGT
GTCATTTCGATGTTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGAC
GTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGT
AAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGC
ATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTTTTGAGCAGTGCATG
GCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGAT
TTTGGTAGTACATGTCGATGACATTTTTGCTGTTGGAGAGAGGGAGAGAT
GTGATAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCAGTGAAGAACCTG
GTGACTAAGGAAGCGCGAACAGCGGAGTATCCCTTGGATGACTATCCTCG
CTCGATGTCTGACGTTTTGAAGAGGGTGCGCGTTGTGGATGGGTGGACAT
ACCTTGGGAGAGGGAGGAGGCGTCTTTGGCCTTTTCACGGGCGGCGGGCT
CGCTGCTTCTGCCCCGCGATCTCGACCACCACCAGCATCTCGTCCTCCGG
GCGGCTGCCTTTCCCCCTGCTCCGCTTCTCCACCCATCCCCAGGCCCGCT
GACCCTCGCTCTCCTTCTCCTCCTCCAGCGGCCGCCTGCTCTCTCCCGAG
GAC back to topprotein sequence of EsuBft1003_4a-0001 >EsuBft1003_4 ID=EsuBft1003_4|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=233bp
MCXIDFGELYVPTVSVSCVGMLAALACELNLDLCHFDVEQAFVRSELEED
VYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCM
ADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNL
VTKEARTAEYPLDDYPRSMSDVLKRVRVVDGWTYLGRGRRRLWPFHGRRA
RCFCPAISTTTSISSSGRLPFPLLRFSTHPQAR back to topmRNA from alignment at Scaffold_340:850517..851786+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1003_4a-0001 ID=EsuBft1003_4a-0001|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1270bp|location=Sequence derived from alignment at Scaffold_340:850517..851786+ (Ectocarpus subulatus male Bft15b)
ATGTGTTNCATTGACTTTGGAGAGTTGTACGTGCCTACCGTTTCTGTTTC
ATGTGTGGGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGT
GTCATTTCGATGTTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGAC
GTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGT
AAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGC
ATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTTTTGAGCAGTGCATG
GCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGAT
TTTGGTAGTACATGTCGATGACATTTTTGCTGTTGGAGAGAGGGAGAGAT
GTGATAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCAGTGAAGAACCTG
GTACTGCGTAGTTTACCTTTCACTCCACCATATCTGATCAGCGTTAAAGT
TCAGCATCGAGAAAGAACAAAGCTAAAATACGAACATGATTCGTCGTGAC
TGAGGACGATACCAACGAATGGGGGCGACTTTTGATCGAGTGGCTTCGGT
GGGAGATGAAAGCATCAAGCGACCAAAATTGATGAACGGCCGTGGTTAGG
TGACTAAGGAAGCGCGAACAGCGGAGTATCCCTTGGATGACTATCCTCGC
TCGATGTCTGACGTTTTGAAGAGGTAACGCTCCTCGTCATGGCGGCGATA
AACGCACTACACATTGGCGCCGAGAGCCTTCCGTAAACTGTTCTTCAGTT
GGACAATCCCCGGCGCGGAGAAAACGCGAAGGAACTGGAGCTGGTCTTCT
CGGAAACAGATGGTACTATTTCTTTTTATTTTCAGGTGTGTTACTTGCGC
CTTACTTTGCGCTCGGTGCCGACAACACCTTCCATGTAGTCGATGTGCGT
ATAGGTGGATGTCAATATGTTCGGTATCCTCACACCACGCTGACGACGAT
GGTAGCGTGTACCTCATTGTTTCAGGACGTGCCAAACGCAGGGTGCGCGT
TGTGGATGGGTGGACATACCTTGGGAGAGGGAGGAGGCGTCTTTGGCCTT
TTCACGGGCGGCGGGCTCGCTGCTTCTGCCCCGCGATCTCGACCACCACC
AGCATCTCGTCCTCCGGGCGGCTGCCTTTCCCCCTGCTCCGCTTCTCCAC
CCATCCCCAGGCCCGCTGACCCTCGCTCTCCTTCTCCTCCTCCAGCGGCC
GCCTGCTCTCTCCCGAGGAC back to topCoding sequence (CDS) from alignment at Scaffold_340:850517..851786+ >EsuBft1003_4a-0001 ID=EsuBft1003_4a-0001|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_340:850517..851786+ (Ectocarpus subulatus male Bft15b)
ATGTGTTNCATTGACTTTGGAGAGTTGTACGTGCCTACCGTTTCTGTTTC
ATGTGTGGGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGT
GTCATTTCGATGTTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGAC
GTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGT
AAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGC
ATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTTTTGAGCAGTGCATG
GCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGAT
TTTGGTAGTACATGTCGATGACATTTTTGCTGTTGGAGAGAGGGAGAGAT
GTGATAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCAGTGAAGAACCTG
GTGACTAAGGAAGCGCGAACAGCGGAGTATCCCTTGGATGACTATCCTCG
CTCGATGTCTGACGTTTTGAAGAGGGTGCGCGTTGTGGATGGGTGGACAT
ACCTTGGGAGAGGGAGGAGGCGTCTTTGGCCTTTTCACGGGCGGCGGGCT
CGCTGCTTCTGCCCCGCGATCTCGACCACCACCAGCATCTCGTCCTCCGG
GCGGCTGCCTTTCCCCCTGCTCCGCTTCTCCACCCATCCCCAGGCCCGCT
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