EsuBft1003_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1003_4a-0001
Unique Name	EsuBft1003_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_340	contig	Scaffold_340:850517..851786 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	160860.XP_007358330.1
ProteomeId	EsuBft1003_4
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	4751\|Fungi
Length	753
Evalue	5.2e-24
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3NUZ7@4751\|Fungi,3UY7N@5204\|Basidiomycota,22B2X@155619\|Agaricomycetes,3H6HR@355688\|Agaricomycetes incertae sedis
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0006259
GO	0003676
GO	0005515
EC	3.1
GO	0016779
GO	0004518

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1003_4a	EsuBft1003_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_340 850517..851786 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1003_4a-0001-exon	agat-exon-86790	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 850517..850966 +
EsuBft1003_4a-0001-exon	EsuBft1003_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 851166..851239 +
EsuBft1003_4a-0001-exon	agat-exon-86791	Ectocarpus subulatus male Bft15b	exon	Scaffold_340 851558..851786 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1003_4a-0001-cds	EsuBft1003_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_340 850517..850966 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1003_4a-0001-exon	agat-three_prime_utr-23	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_340 851736..851786 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1003_4a-0001	EsuBft1003_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_340 850517..851735 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_340:850517..851786+
coding sequence from alignment at Scaffold_340:850517..851786+

spliced messenger RNA

>EsuBft1003_4a-0001 ID=EsuBft1003_4a-0001|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=753bp|location=Sequence derived from alignment at Scaffold_340:850517..851786+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTNCATTGACTTTGGAGAGTTGTACGTGCCTACCGTTTCTGTTTC
ATGTGTGGGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGT
GTCATTTCGATGTTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGAC
GTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGT
AAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGC
ATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTTTTGAGCAGTGCATG
GCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGAT
TTTGGTAGTACATGTCGATGACATTTTTGCTGTTGGAGAGAGGGAGAGAT
GTGATAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCAGTGAAGAACCTG
GTGACTAAGGAAGCGCGAACAGCGGAGTATCCCTTGGATGACTATCCTCG
CTCGATGTCTGACGTTTTGAAGAGGGTGCGCGTTGTGGATGGGTGGACAT
ACCTTGGGAGAGGGAGGAGGCGTCTTTGGCCTTTTCACGGGCGGCGGGCT
CGCTGCTTCTGCCCCGCGATCTCGACCACCACCAGCATCTCGTCCTCCGG
GCGGCTGCCTTTCCCCCTGCTCCGCTTCTCCACCCATCCCCAGGCCCGCT
GACCCTCGCTCTCCTTCTCCTCCTCCAGCGGCCGCCTGCTCTCTCCCGAG
GAC

protein sequence of EsuBft1003_4a-0001

>EsuBft1003_4 ID=EsuBft1003_4|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=233bp
MCXIDFGELYVPTVSVSCVGMLAALACELNLDLCHFDVEQAFVRSELEED
VYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCM
ADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKFGADLNKSVPVKNL
VTKEARTAEYPLDDYPRSMSDVLKRVRVVDGWTYLGRGRRRLWPFHGRRA
RCFCPAISTTTSISSSGRLPFPLLRFSTHPQAR

mRNA from alignment at Scaffold_340:850517..851786+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1003_4a-0001 ID=EsuBft1003_4a-0001|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1270bp|location=Sequence derived from alignment at Scaffold_340:850517..851786+ (Ectocarpus subulatus male Bft15b)
ATGTGTTNCATTGACTTTGGAGAGTTGTACGTGCCTACCGTTTCTGTTTC
ATGTGTGGGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGT
GTCATTTCGATGTTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGAC
GTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGT
AAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGC
ATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTTTTGAGCAGTGCATG
GCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGAT
TTTGGTAGTACATGTCGATGACATTTTTGCTGTTGGAGAGAGGGAGAGAT
GTGATAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCAGTGAAGAACCTG
GTACTGCGTAGTTTACCTTTCACTCCACCATATCTGATCAGCGTTAAAGT
TCAGCATCGAGAAAGAACAAAGCTAAAATACGAACATGATTCGTCGTGAC
TGAGGACGATACCAACGAATGGGGGCGACTTTTGATCGAGTGGCTTCGGT
GGGAGATGAAAGCATCAAGCGACCAAAATTGATGAACGGCCGTGGTTAGG
TGACTAAGGAAGCGCGAACAGCGGAGTATCCCTTGGATGACTATCCTCGC
TCGATGTCTGACGTTTTGAAGAGGTAACGCTCCTCGTCATGGCGGCGATA
AACGCACTACACATTGGCGCCGAGAGCCTTCCGTAAACTGTTCTTCAGTT
GGACAATCCCCGGCGCGGAGAAAACGCGAAGGAACTGGAGCTGGTCTTCT
CGGAAACAGATGGTACTATTTCTTTTTATTTTCAGGTGTGTTACTTGCGC
CTTACTTTGCGCTCGGTGCCGACAACACCTTCCATGTAGTCGATGTGCGT
ATAGGTGGATGTCAATATGTTCGGTATCCTCACACCACGCTGACGACGAT
GGTAGCGTGTACCTCATTGTTTCAGGACGTGCCAAACGCAGGGTGCGCGT
TGTGGATGGGTGGACATACCTTGGGAGAGGGAGGAGGCGTCTTTGGCCTT
TTCACGGGCGGCGGGCTCGCTGCTTCTGCCCCGCGATCTCGACCACCACC
AGCATCTCGTCCTCCGGGCGGCTGCCTTTCCCCCTGCTCCGCTTCTCCAC
CCATCCCCAGGCCCGCTGACCCTCGCTCTCCTTCTCCTCCTCCAGCGGCC
GCCTGCTCTCTCCCGAGGAC

Coding sequence (CDS) from alignment at Scaffold_340:850517..851786+

>EsuBft1003_4a-0001 ID=EsuBft1003_4a-0001|Name=EsuBft1003_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=702bp|location=Sequence derived from alignment at Scaffold_340:850517..851786+ (Ectocarpus subulatus male Bft15b)
ATGTGTTNCATTGACTTTGGAGAGTTGTACGTGCCTACCGTTTCTGTTTC
ATGTGTGGGGATGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGT
GTCATTTCGATGTTGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGAC
GTGTACATGCGTTTGCCGCAGGGATGTGGAGCTCTATCTGGAATGATTGT
AAAACTAGGCAAGAGTCTGTATGGCTTGAGACAGGCATCTAGGCAGTGGC
ATGCAATGCTGAAGAGGTGTTTGGTGGCGTTAGGTTTTGAGCAGTGCATG
GCCGATGCTTGTGTGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGAT
TTTGGTAGTACATGTCGATGACATTTTTGCTGTTGGAGAGAGGGAGAGAT
GTGATAAGTTTGGCGCCGACCTTAACAAGTCCGTGCCAGTGAAGAACCTG
GTGACTAAGGAAGCGCGAACAGCGGAGTATCCCTTGGATGACTATCCTCG
CTCGATGTCTGACGTTTTGAAGAGGGTGCGCGTTGTGGATGGGTGGACAT
ACCTTGGGAGAGGGAGGAGGCGTCTTTGGCCTTTTCACGGGCGGCGGGCT
CGCTGCTTCTGCCCCGCGATCTCGACCACCACCAGCATCTCGTCCTCCGG
GCGGCTGCCTTTCCCCCTGCTCCGCTTCTCCACCCATCCCCAGGCCCGCT
GA