EsuBft1085_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1085_8a-0001
Unique NameEsuBft1085_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:212322..212867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1085_8
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length54
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_8aEsuBft1085_8aEctocarpus subulatus male Bft15bgeneScaffold_339 212322..212867 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_8a-0001-exonEsuBft1085_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 212322..212867 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_8a-0001-exonagat-five_prime_utr-505Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 212322..212523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_8a-0001-cdsEsuBft1085_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 212524..212682 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_8a-0001-exonagat-three_prime_utr-793Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 212683..212867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1085_8a-0001EsuBft1085_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 212524..212682 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1085_8a-0001 ID=EsuBft1085_8a-0001|Name=EsuBft1085_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=546bp|location=Sequence derived from alignment at Scaffold_339:212322..212867+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GAAGCTTCGGTTTCCACCTCTGTGCTTTCGAGTACCGAGCCTTCTGTTTT
TGCAGCCGCTGGTGGTGTGTCCCAAGAATTCCCGCCGGAACCACATGTTG
CTGATCTCACTTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCTGCTGGT
GGGGCAGACATTGGCTTTGACAATACTGGCTCTGTAGTGCCACGCTTGCC
TCATGGCTCTGTTGTTGGCCGCACACTGCATTTCGATTACACTGTGCCGG
CCATTCCTCCTCTTTCGTCGCGTAGCAGTCGTTCACAAGCCGCCGCTCGT
GCCCAACGACTTCATGACCATCATGCATCCGTTTCAGTGGGGTCAGTGCC
TTTGGTTTTGACTGCTTCACATGCGTCTGTCCCGGTGGTTTCGACTGCCT
TTGCGGTTCCGACCGTTTCCAATGCAACCGTCTCAATAGTTTTGACTGCC
CCCGTTGCATCTGCTCCTGTCGTTTCGACTGCCGTGGCTGCTTTCCTTGG
TCTTGATGCACCTGTTTCTATAGTTTCGACTACTTCAACTGCAATT
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protein sequence of EsuBft1085_8a-0001

>EsuBft1085_8 ID=EsuBft1085_8|Name=EsuBft1085_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MALLLAAHCISITLCRPFLLFRRVAVVHKPPLVPNDFMTIMHPFQWGQCL
WF
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mRNA from alignment at Scaffold_339:212322..212867+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1085_8a-0001 ID=EsuBft1085_8a-0001|Name=EsuBft1085_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=546bp|location=Sequence derived from alignment at Scaffold_339:212322..212867+ (Ectocarpus subulatus male Bft15b)
GAAGCTTCGGTTTCCACCTCTGTGCTTTCGAGTACCGAGCCTTCTGTTTT
TGCAGCCGCTGGTGGTGTGTCCCAAGAATTCCCGCCGGAACCACATGTTG
CTGATCTCACTTTTCCTCTCACCTCCACCGCCGCTGAGCCTTCTGCTGGT
GGGGCAGACATTGGCTTTGACAATACTGGCTCTGTAGTGCCACGCTTGCC
TCATGGCTCTGTTGTTGGCCGCACACTGCATTTCGATTACACTGTGCCGG
CCATTCCTCCTCTTTCGTCGCGTAGCAGTCGTTCACAAGCCGCCGCTCGT
GCCCAACGACTTCATGACCATCATGCATCCGTTTCAGTGGGGTCAGTGCC
TTTGGTTTTGACTGCTTCACATGCGTCTGTCCCGGTGGTTTCGACTGCCT
TTGCGGTTCCGACCGTTTCCAATGCAACCGTCTCAATAGTTTTGACTGCC
CCCGTTGCATCTGCTCCTGTCGTTTCGACTGCCGTGGCTGCTTTCCTTGG
TCTTGATGCACCTGTTTCTATAGTTTCGACTACTTCAACTGCAATT
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Coding sequence (CDS) from alignment at Scaffold_339:212322..212867+

>EsuBft1085_8a-0001 ID=EsuBft1085_8a-0001|Name=EsuBft1085_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_339:212322..212867+ (Ectocarpus subulatus male Bft15b)
ATGGCTCTGTTGTTGGCCGCACACTGCATTTCGATTACACTGTGCCGGCC
ATTCCTCCTCTTTCGTCGCGTAGCAGTCGTTCACAAGCCGCCGCTCGTGC
CCAACGACTTCATGACCATCATGCATCCGTTTCAGTGGGGTCAGTGCCTT
TGGTTTTGA
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