EsuBft1980_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1980_3a-0001
Unique NameEsuBft1980_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_329contigScaffold_329:104699..105517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LR16
ProteomeIdEsuBft1980_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length81
Hectar predicted targeting categoryother localisation
Evalue5.34e-26
EggNOG OGsKOG1388@1|root,KOG1388@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00037,RC00094
KEGG koko:K13171,ko:K16795
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,ko03013,ko03015,map00565,map01100,map03013,map03015
KEGG ModuleM00430
EC3.1.1.47
Descriptionplatelet-activating factor acetyltransferase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_3aEsuBft1980_3aEctocarpus subulatus male Bft15bgeneScaffold_329 104699..105517 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_3a-0001-exonEsuBft1980_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_329 104699..105517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_3a-0001-cdsEsuBft1980_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_329 104699..104968 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_3a-0001-exonagat-three_prime_utr-7424Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_329 104969..105517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1980_3a-0001EsuBft1980_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_329 104699..104968 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1980_3a-0001 ID=EsuBft1980_3a-0001|Name=EsuBft1980_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=819bp|location=Sequence derived from alignment at Scaffold_329:104699..105517+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCCTGCTCAAATGTCCTCCCCGGCCGGACTTCCAACCGAACCT
CTCATGTTCTATGACACCGCTGAGCCATACCCCACAAACTACCGGTTACA
CTTTTGTGGCCTGGCCCAACCTTAGGTTTTTGGCGGAAGATCGGTTTGGC
CGTGAGGTTCTCAACAAGGAGTTCATCCTGCCGGACAACCTCCACCTCAC
CGGCGATGGCCTGGATGCTTGGGCCGACTGCGCGGAAGCCGCGGTTCACT
CTGGGCTAGGGGAAGGCTAGCTAAGGCAGTGGAGGGCCGCCGTTGTCTTG
CGTTTTGTAGTATTTGCGTGCGTGTGTATTGGACGCTCGCCTTTTGCCCC
GATGAGCGGCACCGCGTATCATGCGGGGATTTGAGCAGTACACGTTAGTC
TTGTTTCCAACCATCTCAACAACGAGATGGTAGCAGTGTCTGTATCTCTC
TCCACCCTCAAAACGCTACCTATTGAAGCTGGTACAGAGTAGCTTCTGCA
AAGCTTCTGATACAAGATGCGGTAGTTGTGCTGCAACAGTTTTTTGTGTG
TTGCTTCCTGTGACGAGAAACGTGTTGCGTTGTTGTATACGTACCGAATA
TTGGGTACTACCACATTTGCCTCCTGGGACATCCTCCAGGAGACTATTGT
TCGCCCATATCTTCGGGGGGGCATGAGAGGTGTTGTTTGTCTAACCCGAA
AGCCGCTTGCTGGACGCTTGACCCTGTGTAGAAAAAGAATTGCACCGTCG
GCTTTGGAGATAGGGGCGACGGGGAACGAAATCCCGCAACCCCAAGGTTG
ACGTGTCTTTGACGTTGTA
back to top

protein sequence of EsuBft1980_3a-0001

>EsuBft1980_3 ID=EsuBft1980_3|Name=EsuBft1980_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MRSLLKCPPRPDFQPNLSCSMTPLSHTPQTTGYTFVAWPNLRFLAEDRFG
REVLNKEFILPDNLHLTGDGLDAWADCAEAAVHSGLGEG
back to top

mRNA from alignment at Scaffold_329:104699..105517+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1980_3a-0001 ID=EsuBft1980_3a-0001|Name=EsuBft1980_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=819bp|location=Sequence derived from alignment at Scaffold_329:104699..105517+ (Ectocarpus subulatus male Bft15b)
ATGCGTTCCCTGCTCAAATGTCCTCCCCGGCCGGACTTCCAACCGAACCT
CTCATGTTCTATGACACCGCTGAGCCATACCCCACAAACTACCGGTTACA
CTTTTGTGGCCTGGCCCAACCTTAGGTTTTTGGCGGAAGATCGGTTTGGC
CGTGAGGTTCTCAACAAGGAGTTCATCCTGCCGGACAACCTCCACCTCAC
CGGCGATGGCCTGGATGCTTGGGCCGACTGCGCGGAAGCCGCGGTTCACT
CTGGGCTAGGGGAAGGCTAGCTAAGGCAGTGGAGGGCCGCCGTTGTCTTG
CGTTTTGTAGTATTTGCGTGCGTGTGTATTGGACGCTCGCCTTTTGCCCC
GATGAGCGGCACCGCGTATCATGCGGGGATTTGAGCAGTACACGTTAGTC
TTGTTTCCAACCATCTCAACAACGAGATGGTAGCAGTGTCTGTATCTCTC
TCCACCCTCAAAACGCTACCTATTGAAGCTGGTACAGAGTAGCTTCTGCA
AAGCTTCTGATACAAGATGCGGTAGTTGTGCTGCAACAGTTTTTTGTGTG
TTGCTTCCTGTGACGAGAAACGTGTTGCGTTGTTGTATACGTACCGAATA
TTGGGTACTACCACATTTGCCTCCTGGGACATCCTCCAGGAGACTATTGT
TCGCCCATATCTTCGGGGGGGCATGAGAGGTGTTGTTTGTCTAACCCGAA
AGCCGCTTGCTGGACGCTTGACCCTGTGTAGAAAAAGAATTGCACCGTCG
GCTTTGGAGATAGGGGCGACGGGGAACGAAATCCCGCAACCCCAAGGTTG
ACGTGTCTTTGACGTTGTA
back to top

Coding sequence (CDS) from alignment at Scaffold_329:104699..105517+

>EsuBft1980_3a-0001 ID=EsuBft1980_3a-0001|Name=EsuBft1980_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_329:104699..105517+ (Ectocarpus subulatus male Bft15b)
ATGCGTTCCCTGCTCAAATGTCCTCCCCGGCCGGACTTCCAACCGAACCT
CTCATGTTCTATGACACCGCTGAGCCATACCCCACAAACTACCGGTTACA
CTTTTGTGGCCTGGCCCAACCTTAGGTTTTTGGCGGAAGATCGGTTTGGC
CGTGAGGTTCTCAACAAGGAGTTCATCCTGCCGGACAACCTCCACCTCAC
CGGCGATGGCCTGGATGCTTGGGCCGACTGCGCGGAAGCCGCGGTTCACT
CTGGGCTAGGGGAAGGCTAG
back to top