Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 102107.XP_008229478.1 |
| ProteomeId | EsuBft1014_3 |
| Protein domains | IPR001584 |
| Protein domains | IPR012337 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 35493|Streptophyta |
| Length | 265 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.21e-14 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,37SNQ@33090|Viridiplantae,3GHRQ@35493|Streptophyta |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | spliceosomal complex assembly |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
| GO | 0015074 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1014_3a-0001 ID=EsuBft1014_3a-0001|Name=EsuBft1014_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2655bp|location=Sequence derived from alignment at Scaffold_119:219326..222856+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGATGGAGGATTGGTTATTGCCGAACCACCCAGCTGATTGGCAGCTTCT
CGTCGCTGAGCTGGACAATGTACCCATGAAGGATGATGAGTACCCCAAAC
TGTTCTCGCGCGTCGCACAATTGGAGACCAAGTTGCGGGCTGTGGGCATT
GCTAAGAGTGAGCAGGAAGATGTGCAGATCCTTGTCCGCCGACTCCCCGC
ACGTTACGATGTCGAGAAGCGCCCCAGTCTTTCCAAGCGTGATGTAACCC
GCGCTGAGTTGCAGGACGTCGTGCGTGGTCGATATGCTACGCTCAAGGCC
AGCGAGATGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGC
CAACCCCCATGCTCTTGTTGTGGGCCGTGGTTTTGGACACGGTGGCGACG
GGGGAAGCGAGGGGGGCGGAGGCCAACGGCGGAATGCCAACAACGGCGAA
GGCCGCGGGCACCTGGCCCTCTGGGGGCGGCGTTGTCCAACAGCAACAGC
CGCAGTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAG
ATGCAACAGTCGTACCGACAGCCGCAGCATCAGATGCAGATGCAACAGTC
GCACCAAAAGTCGCAGCAGCAGATGCGACAGCGACAGCCGTACCAACAGT
CGCAGATGCAGCCGTACCGGCAGCCACAGCCGCAGCCGCAGCAGCAGCGG
CAGCAGTCGTGACACCGGGTGAGCCCTACTTTGATGTTGTCGACATTTTC
CACGGCGGCGGTGGCGTGGACGGTGAAAATGGCGGCGGCAGCGGTGGTGG
TGATGCGGCGGGAGCGGACCCTGAGACGCTTGGCAACGGCGAGGGTACCC
TCGGTGGTGGCCTCTTCGCGACTCACCTTGTCTGTTCTGTTACCTTACCC
CCCCCCTTGCGCGAAGCATCCGACATTTTCCCATACCGCCCGGGTTCGAC
GGTCTTCCTTGGAGACACCGGCGCCGTAGTCCACGTGGTCCCTTCCGAGG
AAAAGGTATACAACAAGCGCCCGCCGCTCCCGGAGGAGCGACTACTCTTG
ATTGGCGACGGCAAGCACATCCCAGTTGAGTGTTTCGGTGACTTGGATGT
TATCTTCCACCGCCCTGAGGACGTGCGCGTCACCCTGAAGAATGTTGGTG
GGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAGATCCAGGAT
CGCCATGAGATCAAGCTTAACCGGCATGGAGCATCGATCTTGGGGGGGCA
GCCCCTCGCGATGGTTTCGGCGATGCTACGGCCTGTCTCGCAATCCAGCA
TGGAGAATAACGCTCTTCTCTGCTCCCTCGGTCATGACAATGCCAAGACG
CTGTACGAGACCGCCACGCAAATGGGTACTAAGGTGACCGGCACCCCGGA
GTACTGCGATGGATGCGCAGAATCGAAGGCGATCCAGCGCTCGGTACCAA
AGATCATCTCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCG
ATGGACCTAGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACGT
GATGCAGATCCTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGC
GGGAGAAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGTATGCC
TCCATCAAATCGCTCTTGGCTACTCACGGGGGGCTGGGCTGTGTTCTGAC
CGACAACGGCACGGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCTGGCGG
AGCTGAACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGAGCAAC
GGTCGCCAGGATCATTCCTCTACGATGCACAAGATCATCACGCCGGCTGG
GGTGCCCACGTACTCCGAACACTGCACCTTCGGCTTCAGCAGCCAGGGCT
TTCGGGGAGATTGGTGTTCTTGGGGGTCGGTAGGGGGAATGGCCGGGGTC
CCCGCAGTGGCGGCAGGAGCGGCGTCATCGGCGGCGGTAGCTCCAACGGC
GACGGCGGCGACCACCGGCGGCAGTGTTGTCCCCGCGGCGGCGGCGAGGG
GGACGGGCGGGGTCCCCGCAGTGGCGGCAGGAGCGGCGGCATCGGCGACA
GCTCCTGCGGCAACGGCGGAGTCCTCTGGCGGCAGTGTTCCCCCCGCGGC
AGCGGCGGGGGGGACGGCGGAAACTCCGGCGGCGACGGAGCAGCGGCAGA
ATGAGCATATGACGGAGCCGGAGAGCATAGTAGAGAGCGGAGCAGCGCGC
AGCGCGGTGTTGGCGGAACTTGCGCGGATGGCGGGGGGGCCTTCGTGGGT
GAGCACACCTGCGGCACCTGATGCCACACCTGCCCCCGCGCACTCGGCGG
CGGCGCCGCTGGCATCGGATGGACTGTGGACGGAGATGGTGCACGAGGAC
GGTGCCAGCGGGCGTAGGCAGGGGCAGCGGGAGGATGTAGCAACCCCCGC
AATGACGAGGTCGCTGGCGAAGCGAGATGGGCCGGGGCCGGGAATATCTG
CTCTTCTAGGCACGGAGGACGAGATCAAGCTGTGCACCGCCGAGCTTCCT
GCACCGGGCGTGGCTGAGCCAACCCTGCCGACGGAGCTGGCCCGCGAACT
GGAGACGCCTGAGACATACGGGGAGGCGCACGCGGGGCCACACCACAACA
TCTGA back to topprotein sequence of EsuBft1014_3a-0001 >EsuBft1014_3 ID=EsuBft1014_3|Name=EsuBft1014_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=884bp
MMEDWLLPNHPADWQLLVAELDNVPMKDDEYPKLFSRVAQLETKLRAVGI
AKSEQEDVQILVRRLPARYDVEKRPSLSKRDVTRAELQDVVRGRYATLKA
SEMRERGSAAATPAVSANPHALVVGRGFGHGGDGGSEGGGGQRRNANNGE
GRGHLALWGRRCPTATAAVAGAAVPAAATAAAADATVVPTAAASDADATV
APKVAAADATATAVPTVADAAVPAATAAAAAAAAAVVTPGEPYFDVVDIF
HGGGGVDGENGGGSGGGDAAGADPETLGNGEGTLGGGLFATHLVCSVTLP
PPLREASDIFPYRPGSTVFLGDTGAVVHVVPSEEKVYNKRPPLPEERLLL
IGDGKHIPVECFGDLDVIFHRPEDVRVTLKNVGGVPGLALDILSLNKIQD
RHEIKLNRHGASILGGQPLAMVSAMLRPVSQSSMENNALLCSLGHDNAKT
LYETATQMGTKVTGTPEYCDGCAESKAIQRSVPKIISPSRRTTRPLERVA
MDLAGPFGQSSGGAKYVMQILDHHTNYGWICFLREKSSTNVVAAFRAWYA
SIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAELNITRELTAVDGPKSN
GRQDHSSTMHKIITPAGVPTYSEHCTFGFSSQGFRGDWCSWGSVGGMAGV
PAVAAGAASSAAVAPTATAATTGGSVVPAAAARGTGGVPAVAAGAAASAT
APAATAESSGGSVPPAAAAGGTAETPAATEQRQNEHMTEPESIVESGAAR
SAVLAELARMAGGPSWVSTPAAPDATPAPAHSAAAPLASDGLWTEMVHED
GASGRRQGQREDVATPAMTRSLAKRDGPGPGISALLGTEDEIKLCTAELP
APGVAEPTLPTELARELETPETYGEAHAGPHHNI back to topmRNA from alignment at Scaffold_119:219326..222856+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1014_3a-0001 ID=EsuBft1014_3a-0001|Name=EsuBft1014_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3531bp|location=Sequence derived from alignment at Scaffold_119:219326..222856+ (Ectocarpus subulatus male Bft15b)
ATGATGGAGGATTGGTTATTGCCGAACCACCCAGCTGATTGGCAGCTTCT
CGTCGCTGAGCTGGACAATGTACCCATGAAGGATGATGAGTACCCCAAAC
TGTTCTCGCGCGTCGCACAATTGGAGACCAAGTTGCGGGCTGTGGGCATT
GCTAAGAGTGAGCAGGAAGATGTGCAGATCCTTGTCCGCCGACTCCCCGC
ACGTTACGATGTCGAGAAGCGCCCCAGTCTTTCCAAGCGTGATGTAACCC
GCGCTGAGTTGCAGGACGTCGTGCGTGGTCGATATGCTACGCTCAAGGCC
AGCGAGATGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGC
CAACCCCCATGCTCTTGTTGTGGGCCGTGGTTTTGGACACGGTGGCGACG
GGGGAAGCGAGGGGGGCGGAGGCCAACGGCGGAATGCCAACAACGGCGAA
GGCCGCGGGCACCTGGCCCTCTGGGGGCGGCGTTGTCCAACAGCAACAGC
CGCAGTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAG
ATGCAACAGTCGTACCGACAGCCGCAGCATCAGATGCAGATGCAACAGTC
GCACCAAAAGTCGCAGCAGCAGATGCGACAGCGACAGCCGTACCAACAGT
CGCAGATGCAGCCGTACCGGCAGCCACAGCCGCAGCCGCAGCAGCAGCGG
CAGCAGTAACAGCCCACTATGAACGGTGTTGGTGGCATCTACGATTGCGG
TAGCAATGCCGTGTATCATCAGCCGGAATCATCACCTCAACCTGGCGCGC
CGATGGGTACAGTGCACAGATGCGGCCGGTGTGGAAGGCACGGTCACCAT
GCCACAGATTGCGCCGCCCCCCGCAGGTTTGAGGGCACGTGCGGTGCATG
CGGCCAGTACGGCTACATGTGGCGCAACTGTGCCAAGAGCAACCGGAATC
CCCATCTCAACGTCGTCACTTCTGCTGGTGCTATCGGTCCAGAGTACGTG
TACACCACCGCGGATGCATCGGCCGTCCAATTTTGTGATGTCCCGGCGGT
CGATGGCGTACACTACAGTGACACCATGCTGGCTGGTGGTGGCGGCAGCG
GTGGTGGTGGTGCTGGCGGTGGCGGCAGCGGCGATGGCGATGACGGCGGT
AGCGTGGGGCGATCGTACAGCAGCAGGTCGTGACACCGGGTGAGCCCTAC
TTTGATGTTGTCGACATTTTCCACGGCGGCGGTGGCGTGGACGGTGAAAA
TGGCGGCGGCAGCGGTGGTGGTGATGCGGCGGGAGCGGACCCTGAGACGC
TTGGCAACGGCGAGGGTACCCTCGGTGGTGGCCTCTTCGCGACTCACCTT
GTCTGTTCTGTTACCTTACCCCCCCCCTTGCGCGAAGCATCCGACATTTT
CCCATACCGCCCGGGTTCGACGGTCTTCCTTGGAGACACCGGCGCCGTAG
TCCACGTGGTCCCTTCCGAGGAAAAGGTATACAACAAGCGCCCGCCGCTC
CCGGAGGAGCGACTACTCTTGATTGGCGACGGCAAGCACATCCCAGTTGA
GTGTTTCGGTGACTTGGATGTTATCTTCCACCGCCCTGAGGACGTGCGCG
TCACCCTGAAGAATGTTGGTGGGGTACCGGGTTTGGCGCTAGATATTCTG
TCGCTGAACAAGATCCAGGATCGCCATGAGATCAAGCTTAACCGGCATGG
AGCATCGATCTTGGGGGGGCAGGTTCGCATGACAAAATTCCCTCACGGGA
AACACATATAGGGGACTCGCGTTGATCCACTGCCTCAACGCGACTCACCT
CCTCAGCCCCTCGCGATGGTTTCGGCGATGCTACGGCCTGTCTCGCAATC
CAGCATGGAGAATAACGCTCTTCTCTGCTCCCTCGGTCATGACAATGCCA
AGACGCTGTACGAGACCGCCACGCAAATGGGTACTAAGGTGACCGGCACC
CCGGAGTACTGCGATGGATGCGCAGAATCGAAGGCGATCCAGCGCTCGGT
ACCAAAGATCATCTCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTG
TCGCGATGGACCTAGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAG
TACGTGATGCAGATCCTGGACCACCATACCAACTACGGATGGATTTGCTT
TCTGCGGGAGAAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGT
ATGCCTCCATCAAATCGCTCTTGGCTACTCACGGGGGGCTGGGCTGTGTT
CTGACCGACAACGGCACGGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCT
GGCGGAGCTGAACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGA
GCAACGGTCGTGTGAAGCGGAGGATTGCACTAGTGATGAAGGGGGGCAAG
GCTGCGTTTCTGGAGTTCCCGAAACTTTCCCCCGGAGTTACGTTCCCGGC
CAAGGCGCTGTCCTTCCGGGCCATCTGACCCGAGGCCTTCGCGTGGATGA
ACGTCTCTCTGAACATCGCAGTTGAGGTGAGCACGGAAGACAAGCAGTGC
GCGGAGGTTAAGCTGCACGGTAGGAGGAGGACCCGAGTGCTTCTGCCGTT
CATGACGCCCGGCTTCTGTCACCGTCACCGCCCGTCCAAGATGCACAGTA
CGGGGGAGCGGTGATTCTATTTGAATTCAGGCCAGGATCATTCCTCTACG
ATGCACAAGATCATCACGCCGGCTGGGGTGCCCACGTACTCCGAACACTG
CACCTTCGGCTTCAGCAGCCAGGGCTTTCGGGGAGATTGGTGTTCTTGGG
GGTCGGTAGGGGGAATGGCCGGGGTCCCCGCAGTGGCGGCAGGAGCGGCG
TCATCGGCGGCGGTAGCTCCAACGGCGACGGCGGCGACCACCGGCGGCAG
TGTTGTCCCCGCGGCGGCGGCGAGGGGGACGGGCGGGGTCCCCGCAGTGG
CGGCAGGAGCGGCGGCATCGGCGACAGCTCCTGCGGCAACGGCGGAGTCC
TCTGGCGGCAGTGTTCCCCCCGCGGCAGCGGCGGGGGGGACGGCGGAAAC
TCCGGCGGCGACGGAGCAGCGGCAGAATGAGCATATGACGGAGCCGGAGA
GCATAGTAGAGAGCGGAGCAGCGCGCAGCGCGGTGTTGGCGGAACTTGCG
CGGATGGCGGGGGGGCCTTCGTGGGTGAGCACACCTGCGGCACCTGATGC
CACACCTGCCCCCGCGCACTCGGCGGCGGCGCCGCTGGCATCGGATGGAC
TGTGGACGGAGATGGTGCACGAGGACGGTGCCAGCGGGCGTAGGCAGGGG
CAGCGGGAGGATGTAGCAACCCCCGCAATGACGAGGTCGCTGGCGAAGCG
AGATGGGCCGGGGCCGGGAATATCTGCTCTTCTAGGCACGGAGGACGAGA
TCAAGCTGTGCACCGCCGAGCTTCCTGCACCGGGCGTGGCTGAGCCAACC
CTGCCGACGGAGCTGGCCCGCGAACTGGAGACGCCTGAGACATACGGGGA
GGCGCACGCGGGGCCACACCACAACATCTGA back to topCoding sequence (CDS) from alignment at Scaffold_119:219326..222856+ >EsuBft1014_3a-0001 ID=EsuBft1014_3a-0001|Name=EsuBft1014_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2655bp|location=Sequence derived from alignment at Scaffold_119:219326..222856+ (Ectocarpus subulatus male Bft15b)
ATGATGGAGGATTGGTTATTGCCGAACCACCCAGCTGATTGGCAGCTTCT
CGTCGCTGAGCTGGACAATGTACCCATGAAGGATGATGAGTACCCCAAAC
TGTTCTCGCGCGTCGCACAATTGGAGACCAAGTTGCGGGCTGTGGGCATT
GCTAAGAGTGAGCAGGAAGATGTGCAGATCCTTGTCCGCCGACTCCCCGC
ACGTTACGATGTCGAGAAGCGCCCCAGTCTTTCCAAGCGTGATGTAACCC
GCGCTGAGTTGCAGGACGTCGTGCGTGGTCGATATGCTACGCTCAAGGCC
AGCGAGATGAGGGAGCGAGGGTCGGCAGCTGCGACGCCGGCGGTTTCTGC
CAACCCCCATGCTCTTGTTGTGGGCCGTGGTTTTGGACACGGTGGCGACG
GGGGAAGCGAGGGGGGCGGAGGCCAACGGCGGAATGCCAACAACGGCGAA
GGCCGCGGGCACCTGGCCCTCTGGGGGCGGCGTTGTCCAACAGCAACAGC
CGCAGTTGCAGGTGCAGCAGTACCGGCAGCCGCAACAGCCGCAGCGGCAG
ATGCAACAGTCGTACCGACAGCCGCAGCATCAGATGCAGATGCAACAGTC
GCACCAAAAGTCGCAGCAGCAGATGCGACAGCGACAGCCGTACCAACAGT
CGCAGATGCAGCCGTACCGGCAGCCACAGCCGCAGCCGCAGCAGCAGCGG
CAGCAGTCGTGACACCGGGTGAGCCCTACTTTGATGTTGTCGACATTTTC
CACGGCGGCGGTGGCGTGGACGGTGAAAATGGCGGCGGCAGCGGTGGTGG
TGATGCGGCGGGAGCGGACCCTGAGACGCTTGGCAACGGCGAGGGTACCC
TCGGTGGTGGCCTCTTCGCGACTCACCTTGTCTGTTCTGTTACCTTACCC
CCCCCCTTGCGCGAAGCATCCGACATTTTCCCATACCGCCCGGGTTCGAC
GGTCTTCCTTGGAGACACCGGCGCCGTAGTCCACGTGGTCCCTTCCGAGG
AAAAGGTATACAACAAGCGCCCGCCGCTCCCGGAGGAGCGACTACTCTTG
ATTGGCGACGGCAAGCACATCCCAGTTGAGTGTTTCGGTGACTTGGATGT
TATCTTCCACCGCCCTGAGGACGTGCGCGTCACCCTGAAGAATGTTGGTG
GGGTACCGGGTTTGGCGCTAGATATTCTGTCGCTGAACAAGATCCAGGAT
CGCCATGAGATCAAGCTTAACCGGCATGGAGCATCGATCTTGGGGGGGCA
GCCCCTCGCGATGGTTTCGGCGATGCTACGGCCTGTCTCGCAATCCAGCA
TGGAGAATAACGCTCTTCTCTGCTCCCTCGGTCATGACAATGCCAAGACG
CTGTACGAGACCGCCACGCAAATGGGTACTAAGGTGACCGGCACCCCGGA
GTACTGCGATGGATGCGCAGAATCGAAGGCGATCCAGCGCTCGGTACCAA
AGATCATCTCCCCCTCCCGCCGGACGACGCGGCCTCTTGAGCGTGTCGCG
ATGGACCTAGCCGGTCCGTTCGGCCAATCCAGCGGCGGTGCCAAGTACGT
GATGCAGATCCTGGACCACCATACCAACTACGGATGGATTTGCTTTCTGC
GGGAGAAGAGCAGTACAAACGTGGTTGCGGCCTTTCGTGCGTGGTATGCC
TCCATCAAATCGCTCTTGGCTACTCACGGGGGGCTGGGCTGTGTTCTGAC
CGACAACGGCACGGAGTGGGTCAACGCGGAGTTTCGGGGGCTGCTGGCGG
AGCTGAACATTACGCGGGAGCTCACGGCGGTCGACGGGCCCAAGAGCAAC
GGTCGCCAGGATCATTCCTCTACGATGCACAAGATCATCACGCCGGCTGG
GGTGCCCACGTACTCCGAACACTGCACCTTCGGCTTCAGCAGCCAGGGCT
TTCGGGGAGATTGGTGTTCTTGGGGGTCGGTAGGGGGAATGGCCGGGGTC
CCCGCAGTGGCGGCAGGAGCGGCGTCATCGGCGGCGGTAGCTCCAACGGC
GACGGCGGCGACCACCGGCGGCAGTGTTGTCCCCGCGGCGGCGGCGAGGG
GGACGGGCGGGGTCCCCGCAGTGGCGGCAGGAGCGGCGGCATCGGCGACA
GCTCCTGCGGCAACGGCGGAGTCCTCTGGCGGCAGTGTTCCCCCCGCGGC
AGCGGCGGGGGGGACGGCGGAAACTCCGGCGGCGACGGAGCAGCGGCAGA
ATGAGCATATGACGGAGCCGGAGAGCATAGTAGAGAGCGGAGCAGCGCGC
AGCGCGGTGTTGGCGGAACTTGCGCGGATGGCGGGGGGGCCTTCGTGGGT
GAGCACACCTGCGGCACCTGATGCCACACCTGCCCCCGCGCACTCGGCGG
CGGCGCCGCTGGCATCGGATGGACTGTGGACGGAGATGGTGCACGAGGAC
GGTGCCAGCGGGCGTAGGCAGGGGCAGCGGGAGGATGTAGCAACCCCCGC
AATGACGAGGTCGCTGGCGAAGCGAGATGGGCCGGGGCCGGGAATATCTG
CTCTTCTAGGCACGGAGGACGAGATCAAGCTGTGCACCGCCGAGCTTCCT
GCACCGGGCGTGGCTGAGCCAACCCTGCCGACGGAGCTGGCCCGCGAACT
GGAGACGCCTGAGACATACGGGGAGGCGCACGCGGGGCCACACCACAACA
TCTGA back to top
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