EsuBft999_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft999_9a-0001
Unique Name	EsuBft999_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:15846..20038 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft999_9
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	179
Hectar predicted targeting category	mitochondrion
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft999_9a	EsuBft999_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 15846..20038 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_9a-0001	EsuBft999_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 15846..17323 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_9a-0001-exon	agat-exon-91881	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 15846..15996 +
EsuBft999_9a-0001-exon	agat-exon-91880	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 16194..17347 +
EsuBft999_9a-0001-exon	EsuBft999_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 19546..20038 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_9a-0001-cds	EsuBft999_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 15846..15996 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_9a-0001-exon	agat-three_prime_utr-23928	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 17324..17347 +
EsuBft999_9a-0001-exon	agat-three_prime_utr-23929	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 19546..20038 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:15846..20038+
coding sequence from alignment at Scaffold_463:15846..20038+

spliced messenger RNA

>EsuBft999_9a-0001 ID=EsuBft999_9a-0001|Name=EsuBft999_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1798bp|location=Sequence derived from alignment at Scaffold_463:15846..20038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTGTGCAAGCAACATGTTTGTAAGTTTATGGTGATGAATGCGCT
TCGAACCATTACCCAGGTCAAACAAGCATCGCGCGTGGCGGGACTGGCGC
TTAACTCCATCCACAAGGGCTTACACATCGCTGATGATATCCGAAACCTC
GGTGCAGTGGGGAACACAAACGCGGGCGAATCCAACCACAAGGACCTCAA
GAAGTCACGACGTGACGCATGTCTTCGGGCTGGGAACAACGAGGTACACA
TCATCAAGAACTGGAACGACAACCAAGCTCTGAAGTCACTGTCCGACAGC
GTCACCTGGGATGCGTGTGGTTTCGAGAACGGAAAGGAGATGCGAAAGGA
GGTGACAGCTGGACCGCTCTGTCGGGAAGTCCTCCAGGACGTTTTCGCCT
TCTTGCCGGCGATGCAACTGAGCCCAGCTTCGGTGGAAGACGGCACGACC
ACCGGGCGTCAAGGAGGGCGGCCTCACGGGTATCAGCAGTGGACGGCCGA
CCTCAAGGGCGTGGACGCGGGCATCGAACTTCAGACATGGCAGGAGGAGG
TGTTCAAAATGCTCCCGTCGCCGCAGGAGCTTGACCAACACTACGCCGAT
TATTTTGGGTGCGGGCGGATTGACGGAGAGGCGCCATGCAACACGCGGAC
GTGCTCGTACTGCTGGAGAAACAGGACCTACAAAGACGGTCTTGTGCATG
ATAGCGTGGAGGTTTTCAACCACTGGGGCGGTGCACCGGGGGAAGCAAAT
GCAGGTACGGGAACCGTCCGAGGGTGCCCGGTGAAGGACGCGGGTCGTCA
TTCTGGGTGGACGCGGTCCACTGCATCAAGGGGCAGTGACGTGGAGATTT
ATCTCACGGCCAATGATCAGCGGGAAGGACGATATGGACTAGAGCAAACG
ACTTTGGGCAAGGTCGCCTTCTTCTTTGAGCACCAGGGCAACCCTTGGCG
GCGAGACGACGAAAGCAACGTTCTCCCTGAAGGGGAATACACCATCTGGA
TGGCCGTGTCTGAGTACGTGACCGCCGGAGTGGGTAATAACTTGCAGCTC
CATCACACAACAGGGTTGGCCGAGTTCAAGATGCGTCACACCCTAACCTT
CTACCCCACCCCGGCCATTCGGCGTGTAGTCCATATGATGCATGCGTGTC
CCACATCTGGCGAATCGGCCTGTGGTCTGGTACGCGAGAGCAAGCGGCAG
TGGCGGTGCAACCTACTGGGGACCTCAACATACCTGCTGAACAAGTACTT
CCACAGTCCAGGGCGCGATTCCATCGACTAAAATGTGAGTTCTGACGCTA
ACCCAGTCCTTCCGGCTAATTCCGCGAGAAGAAAGAGGGCGGGGCAGTAT
TGGTGGAGTCACCGAGAGAACACAACTTGATAGTTCTCTCTCCGCCTGTT
TTGAATGTTTGGAGTTTTTTTGTTTGTGTGGGGGGATGAGGGGTTAAACT
TGTACCAGTGTCGAAGAAGTAGAACGCAAGTCGTATCTGTGGCGGCCTTT
CTCACTTGGTGTCCTTGCCTTGGCCACGTGAAGCATGCCTTGGATGGCGT
TGTACTGAGGATCACATCCTTGGAATGGAGCTTTTAGCTTCGTTTCTTTG
GCGGTTGGGGTCGCCGCGCCCTCGTGTGGGCCGTTCTGAAGGAAGTGCGT
TCTACGAAGTATGTGTGCCTTGCGAAACCCGGCGCCGAAGGCTCATGATG
ATGGCCGTGTTATTTTTGGCGTCCGAATTATGACGAAGTATTCTGTGGCT
GAGTTTTTTTTTTTGCCGCGGATGACAAAAAATTCTGATAAATTTGCG

protein sequence of EsuBft999_9a-0001

>EsuBft999_9 ID=EsuBft999_9|Name=EsuBft999_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=426bp
MLLCKQHVCKFMVMNALRTITQVKQASRVAGLALNSIHKGLHIADDIRNL
GAVGNTNAGESNHKDLKKSRRDACLRAGNNEVHIIKNWNDNQALKSLSDS
VTWDACGFENGKEMRKEVTAGPLCREVLQDVFAFLPAMQLSPASVEDGTT
TGRQGGRPHGYQQWTADLKGVDAGIELQTWQEEVFKMLPSPQELDQHYAD
YFGCGRIDGEAPCNTRTCSYCWRNRTYKDGLVHDSVEVFNHWGGAPGEAN
AGTGTVRGCPVKDAGRHSGWTRSTASRGSDVEIYLTANDQREGRYGLEQT
TLGKVAFFFEHQGNPWRRDDESNVLPEGEYTIWMAVSEYVTAGVGNNLQL
HHTTGLAEFKMRHTLTFYPTPAIRRVVHMMHACPTSGESACGLVRESKRQ
WRCNLLGTSTYLLNKYFHSPGRDSID

mRNA from alignment at Scaffold_463:15846..20038+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft999_9a-0001 ID=EsuBft999_9a-0001|Name=EsuBft999_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4193bp|location=Sequence derived from alignment at Scaffold_463:15846..20038+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGTGCAAGCAACATGTTTGTAAGTTTATGGTGATGAATGCGCT
TCGAACCATTACCCAGGTCAAACAAGCATCGCGCGTGGCGGGACTGGCGC
TTAACTCCATCCACAAGGGCTTACACATCGCTGATGATATCCGAAACCTC
GGTGAGTTTCGCGCCTTAGGGTGGCCACCGGCGTAGTGCACCTGCGCGTC
AGCATGGACGAACCAACTGATTTCGCCTGGCCGCCGGGGGCTCGCCCTCC
TTACCCTATGGTCCAATTCAGATCATGTTCCAACCCTAACCCAACTCCCT
GCGGATGTCTCCTACGCTGCCGCCCTTCTTTGTCGTTCTCAAGAACAGGT
GCAGTGGGGAACACAAACGCGGGCGAATCCAACCACAAGGACCTCAAGAA
GTCACGACGTGACGCATGTCTTCGGGCTGGGAACAACGAGGTACACATCA
TCAAGAACTGGAACGACAACCAAGCTCTGAAGTCACTGTCCGACAGCGTC
ACCTGGGATGCGTGTGGTTTCGAGAACGGAAAGGAGATGCGAAAGGAGGT
GACAGCTGGACCGCTCTGTCGGGAAGTCCTCCAGGACGTTTTCGCCTTCT
TGCCGGCGATGCAACTGAGCCCAGCTTCGGTGGAAGACGGCACGACCACC
GGGCGTCAAGGAGGGCGGCCTCACGGGTATCAGCAGTGGACGGCCGACCT
CAAGGGCGTGGACGCGGGCATCGAACTTCAGACATGGCAGGAGGAGGTGT
TCAAAATGCTCCCGTCGCCGCAGGAGCTTGACCAACACTACGCCGATTAT
TTTGGGTGCGGGCGGATTGACGGAGAGGCGCCATGCAACACGCGGACGTG
CTCGTACTGCTGGAGAAACAGGACCTACAAAGACGGTCTTGTGCATGATA
GCGTGGAGGTTTTCAACCACTGGGGCGGTGCACCGGGGGAAGCAAATGCA
GGTACGGGAACCGTCCGAGGGTGCCCGGTGAAGGACGCGGGTCGTCATTC
TGGGTGGACGCGGTCCACTGCATCAAGGGGCAGTGACGTGGAGATTTATC
TCACGGCCAATGATCAGCGGGAAGGACGATATGGACTAGAGCAAACGACT
TTGGGCAAGGTCGCCTTCTTCTTTGAGCACCAGGGCAACCCTTGGCGGCG
AGACGACGAAAGCAACGTTCTCCCTGAAGGGGAATACACCATCTGGATGG
CCGTGTCTGAGTACGTGACCGCCGGAGTGGGTAATAACTTGCAGCTCCAT
CACACAACAGGGTTGGCCGAGTTCAAGATGCGTCACACCCTAACCTTCTA
CCCCACCCCGGCCATTCGGCGTGTAGTCCATATGATGCATGCGTGTCCCA
CATCTGGCGAATCGGCCTGTGGTCTGGTACGCGAGAGCAAGCGGCAGTGG
CGGTGCAACCTACTGGGGACCTCAACATACCTGCTGAACAAGTACTTCCA
CAGTCCAGGGCGCGATTCCATCGACTAAAATGTGAGTTCTGACGCTAACC
CAGTTTCGCCTTTTTCTCGTATTTCTGGTATGCTGTGCAAGCGGGCATGA
AAACATAACTTGTTGGCCCAAGACTGCCCACGTAGAAATGCAATGGCTGA
AAATCCTAGGGAACACGTCGGGAAATACTTCCAACTGCCGTTACTGGACC
CCAAGGTGACGGCGGATATGATCAAGATCGCAACACGAGTGGAGTGCATG
GGCAAGAGGGGCAGGTCGGCGGGGAAGAAGGCGATGATGGTGACGGTCGC
AGAGGCCCTGTGGGACATGCTCTACGCTGACGACGCGGCCATCGTCTCGC
TCACGCCGGAGAGCCTCGAAAAGATGATGTCCATCATCGTGCGCGTGGCC
GGCCTGTTCGGACTGATGGTATCGGAGCCAAAGACGGAGATCATGTGCAT
GCTACCGAAAGGGCTGGGGGAACGCCCGTTCGCGGTCAGCGCCGCTGGCC
AGACGTACAAGCAGACAGATCGGTTTGTGTACCTCGGACGTACCATCTGC
GCGGATGGGAAGGTCGACCGGGAGATCACGAGCCGCATCTGCCGAGCATG
GAAGTGCTACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAGGCGGGTGTGGGAAGCGTTCCCCGTTCTCCTTTTATTTTAT
TTTGATCGGTCTCCTCGACGCTCTTTCTCGTTTGGTGCGGTAGCTGGTCT
TTCTTTCTATCATTTTGTTTCTCTTCCGAGTGGTTTTTGTACCCTATTTT
TTTCTATTTCTTCGTAGGGTCGTGTATGCCAGGTTTTGAGACCACGGGCT
CCCAATCTTTCTTTTTTAGAGCTAATGTGAGAAACAACAACAAACAACAA
CTGCAAGATATTGCTCTTCCAGCCGGGAAAAAAATCGGGGAAATATCGGG
GGAAAAAACGGAAAAAATGGCAGCACTGAGGGGAATTGAACCCGCTTCCT
CGGGTAAGGAAGAAGCTTGTCATGCAGTATCGTGCAGTAACGTTGAAGAA
AGAATATCCGTTCTTCCGTGTTGATATTGATACAGCACTTCCTGAATCTG
CAAGGTTGTGGATTCGATTCTCTTTGGCGCCATCTTTTTCCCCATCCGCC
TTCTTTTCCCATTTTTTGTTCCTCTTAATATTTGATGTACAATCTTTTGG
CGGCATTTTCCCGACGTGTCCTTTAAAGAATTTGATTCCTCGCTATAATT
GTAGTAAATCCAATCCCTCTCTTACATGTCAACCCTTCCGCTGCCCTCAG
GTCCTTCCGGCTAATTCCGCGAGAAGAAAGAGGGCGGGGCAGTATTGGTG
GAGTCACCGAGAGAACACAACTTGATAGTTCTCTCTCCGCCTGTTTTGAA
TGTTTGGAGTTTTTTTGTTTGTGTGGGGGGATGAGGGGTTAAACTTGTAC
CAGTGTCGAAGAAGTAGAACGCAAGTCGTATCTGTGGCGGCCTTTCTCAC
TTGGTGTCCTTGCCTTGGCCACGTGAAGCATGCCTTGGATGGCGTTGTAC
TGAGGATCACATCCTTGGAATGGAGCTTTTAGCTTCGTTTCTTTGGCGGT
TGGGGTCGCCGCGCCCTCGTGTGGGCCGTTCTGAAGGAAGTGCGTTCTAC
GAAGTATGTGTGCCTTGCGAAACCCGGCGCCGAAGGCTCATGATGATGGC
CGTGTTATTTTTGGCGTCCGAATTATGACGAAGTATTCTGTGGCTGAGTT
TTTTTTTTTGCCGCGGATGACAAAAAATTCTGATAAATTTGCG

Coding sequence (CDS) from alignment at Scaffold_463:15846..20038+

>EsuBft999_9a-0001 ID=EsuBft999_9a-0001|Name=EsuBft999_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1281bp|location=Sequence derived from alignment at Scaffold_463:15846..20038+ (Ectocarpus subulatus male Bft15b)
ATGCTGCTGTGCAAGCAACATGTTTGTAAGTTTATGGTGATGAATGCGCT
TCGAACCATTACCCAGGTCAAACAAGCATCGCGCGTGGCGGGACTGGCGC
TTAACTCCATCCACAAGGGCTTACACATCGCTGATGATATCCGAAACCTC
GGTGCAGTGGGGAACACAAACGCGGGCGAATCCAACCACAAGGACCTCAA
GAAGTCACGACGTGACGCATGTCTTCGGGCTGGGAACAACGAGGTACACA
TCATCAAGAACTGGAACGACAACCAAGCTCTGAAGTCACTGTCCGACAGC
GTCACCTGGGATGCGTGTGGTTTCGAGAACGGAAAGGAGATGCGAAAGGA
GGTGACAGCTGGACCGCTCTGTCGGGAAGTCCTCCAGGACGTTTTCGCCT
TCTTGCCGGCGATGCAACTGAGCCCAGCTTCGGTGGAAGACGGCACGACC
ACCGGGCGTCAAGGAGGGCGGCCTCACGGGTATCAGCAGTGGACGGCCGA
CCTCAAGGGCGTGGACGCGGGCATCGAACTTCAGACATGGCAGGAGGAGG
TGTTCAAAATGCTCCCGTCGCCGCAGGAGCTTGACCAACACTACGCCGAT
TATTTTGGGTGCGGGCGGATTGACGGAGAGGCGCCATGCAACACGCGGAC
GTGCTCGTACTGCTGGAGAAACAGGACCTACAAAGACGGTCTTGTGCATG
ATAGCGTGGAGGTTTTCAACCACTGGGGCGGTGCACCGGGGGAAGCAAAT
GCAGGTACGGGAACCGTCCGAGGGTGCCCGGTGAAGGACGCGGGTCGTCA
TTCTGGGTGGACGCGGTCCACTGCATCAAGGGGCAGTGACGTGGAGATTT
ATCTCACGGCCAATGATCAGCGGGAAGGACGATATGGACTAGAGCAAACG
ACTTTGGGCAAGGTCGCCTTCTTCTTTGAGCACCAGGGCAACCCTTGGCG
GCGAGACGACGAAAGCAACGTTCTCCCTGAAGGGGAATACACCATCTGGA
TGGCCGTGTCTGAGTACGTGACCGCCGGAGTGGGTAATAACTTGCAGCTC
CATCACACAACAGGGTTGGCCGAGTTCAAGATGCGTCACACCCTAACCTT
CTACCCCACCCCGGCCATTCGGCGTGTAGTCCATATGATGCATGCGTGTC
CCACATCTGGCGAATCGGCCTGTGGTCTGGTACGCGAGAGCAAGCGGCAG
TGGCGGTGCAACCTACTGGGGACCTCAACATACCTGCTGAACAAGTACTT
CCACAGTCCAGGGCGCGATTCCATCGACTAA