EsuBft999_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft999_3a-0001
Unique Name	EsuBft999_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_463	contig	Scaffold_463:67856..72431 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft999_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	253
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-16_001540.1
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft999_3a	EsuBft999_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_463 67856..72431 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_3a-0001-exon	EsuBft999_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 67856..70253 -
EsuBft999_3a-0001-exon	agat-exon-91867	Ectocarpus subulatus male Bft15b	exon	Scaffold_463 72300..72431 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_3a-0001-exon	agat-three_prime_utr-23918	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_463 67856..70070 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_3a-0001-cds	EsuBft999_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_463 70071..70253 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_3a-0001-exon	agat-five_prime_utr-15602	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_463 72393..72431 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft999_3a-0001	EsuBft999_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_463 70071..72392 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_463:67856..72431-
coding sequence from alignment at Scaffold_463:67856..72431-

spliced messenger RNA

>EsuBft999_3a-0001 ID=EsuBft999_3a-0001|Name=EsuBft999_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2530bp|location=Sequence derived from alignment at Scaffold_463:67856..72431- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAATCGGCCATTTGTCTCTCGTTTGACGTGCAGCATGTTGCCAAC
AGCACAACCAGCGCCAGCAATAGATTCCTCCGTGAAAGCGGAGGTGAAAG
TGGAGCCGACGGGGGTCGTCAAGCAGTTCGAGGACTTGATTGAGACGGTC
ATCAGCACCATTCAAGAGCCCGAAGTCACGGAGGCCGGCGTCGCGGCCGT
AATGGCGAGGCTCCAGGCTTATAGCGACGGGATAAACCGGCTCATCGAGA
CCCTGCCGCCAGAGGCCGCCAACGGCAACGAGGGGGGCGTAGGAGTGGGG
CGGGGAGGGGTTTGATGAATACTAAGCTTATGGGGTGAGATTATGTTTCA
CTTGGAGGGAGAGCCGCGTATGTATTAGTAGTATTCTACTGTCCTTTTTT
TTTTTGTACAAAGCTCGTTCCTCTTTTTACTTCTGCGCGCCGGTATTGCT
ACCGCTTCCGGAGTTTCCCCTTGATCTGAGACTGCGTTTTGGTGGTCGCG
ACGAGGATCAGCCGTCGCTCTCTCCCTCGTTCTCAACCGCTGTCGGCTGG
CTTGCATTGTACGGCATTCCCTTGAGCGCGGGGCTTGATTTTATTGAGGT
AGACTTATCGGCAATTGCTAGTTCCGTGTGCCCCGGCGATAATTGCAGTT
TCTTGGCTGGTGCTGGTGCAATCGGCCTCGGGGCCTGTCGGGTGCTATTT
TCCGTCGTGCCATACAATGAATTTCGATTCCCAACGCAAGAGAGGAGGAG
GGCAGGAGGGAGGAGTTACTCATTTTTTTCGTGTAGTAATTTATGAGCGT
GGATTGTTCATGCATTTTGGTAGAGACGGAGCACCGTTCTTTGTTAAGGG
GCTGAGGGCGGCGGGGGGCTTCGTCGCGGCATATTAGCGCCAAGACGGCG
AGTAAGCGTCCGCTCGGTGAAGCTTGCTCGCAGAGCTCCCGGCGGGCACG
ATGTGTCGCTGTCCTTGCCAATGCGAGAGACGGCAATCAGCACATAAGTG
CTTAGGCGGGCGGTAGAACTTCTCTCGGCATCAGGGAGTATGCCTTGGAA
GGTGTGTTGTCCATAGGAAAACCCGAAAGTGGCGTTTTGTAGACCGGGCT
GGGGGCCCCCCGTCCCCTTCGTCTTCCTCGTGCCTCAGAGAGCGGTATCA
GTACCATGCTGTAATCTCTGCGAGCCAACTTTTATTACCCAATAATTACA
AGCTGTCCGTGACGATATTTGTGGCTCTGTTTCCGTGAAAAACAGCGTTT
GTTTTTCTGGCAATGTTGTGGTGAGCCTAGCAGCAAGTTTTTTTTGCCTC
CTTAGAGGGGACAGGAAGGACGCAAGCAGCAGGGTGCCCCCGGCCTCCTC
GTTGTTGTTATATCCTTCGGCGTGTGCGTGTGTCGTGTGTTTTGTGTGTG
TTGCGTGTGCGCGTTAATTTCCCCGCGTTTCTCTGGGCCGCCACAGAGAC
GCTCCCTCGAATGACACCGAACATCTCTCCCCAGCCGGGAGAAAACCCGG
AAATGTTCCGTTTGTCTTGGTCTCGGTACTGTACTGGTTCGCGGGCAGCC
CTGCTGTCTCTTAATTCGACCTAGAACGGGATACACTCCGTACTCCTTTT
TTTGTGTTCCTCTCGCCATATGTGTGTATGGAGATGATTAATACAGGGTG
TTAGTCGCGCGTATAGTGCTGGCTGGGGTTGCTTGCTGTACTGTTGTTGC
TGCGGCCAGGCCTTAATATTCGTGAAACATCCATTGTCCTTGTCGTAAAA
TGTTGTTGTCAGAGAGGGAGGGAGAGAGAAATAGAAATACCGGTCGTCTT
AGTCGAGCTGTGCGCCCGCGTACACTTGGTATGGATGGAGATTTTGGTGG
GTTGGGATTTCATGTGGTGGGACCAAGGGGGGGTTAAGGAATGATATCTG
GCTCCCACGCTAAACATTCCAGTCGTTGTTTTTCGGAGTGGGCGACTTGC
GTTGTGGGCGAGAATGAACGCAATAAGCGGCGGGTAGTGATGGCTGTCTG
TCTCACCTCAAAACGACGAGCCCGAATCTGAATCCACACGCTGCCGCGTC
TGGTCATGCTGACTCGGTGTGCGAAGACGGGAGACGACGACGACGGTCGG
TGAGCCGGGCCTGCGAGCTGCCCCGCGCGCTTGCCTCATCATAATTTTTT
TGCCGGGCCAATGGCGCGCCTTTCCTCGTTCAGCCCGGTGTGGCGTCGGT
GAGGAATTTACACGCCTATTTCCGCAACACCTTGCACCCTCTTTTAGTGC
CGTCTTTCTTTTTCCTGTTGTGTTGTGCTGGAAGGCCCGGGGTTCGTTGT
GGAATTCCTACTCTAGCAATAATCCGTCACCAGGTTCTTAGTTGTTGTAA
CCGTTCAGGTCTCTAGGCTCTATTCGTTTTAACGTCAGTACCAGTCCAAC
GGACGGGGACGCCTTCCGTAGCCTCTGGCACATCTTGGATATCAAGTTGA
CTCTAAGATATTATAATGATGTTTTCCATTGTAACAACTTCGCGCAATAA
CGTCTCGGGCATCATCAAATGATTCTGAGT

protein sequence of EsuBft999_3a-0001

>EsuBft999_3 ID=EsuBft999_3|Name=EsuBft999_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=91bp
MLPTAQPAPAIDSSVKAEVKVEPTGVVKQFEDLIETVISTIQEPEVTEAG
VAAVMARLQAYSDGINRLIETLPPEAANGNEGGVGVGRGGV

mRNA from alignment at Scaffold_463:67856..72431-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft999_3a-0001 ID=EsuBft999_3a-0001|Name=EsuBft999_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4576bp|location=Sequence derived from alignment at Scaffold_463:67856..72431- (Ectocarpus subulatus male Bft15b)
ATGCTCAATCGGCCATTTGTCTCTCGTTTGACGTGCAGCATGTTGCCAAC
AGCACAACCAGCGCCAGCAATAGATTCCTCCGTGAAAGCGGAGGTGAAAG
TGGAGCCGACGGGGGTCGTCAAGCAGTTCGAGGTGAGCGAAATAGCGCGT
GAAGAACACAGATGGAGATTCTCCACACTTTGTCCCCTGTTGTTCGGAAA
CGAACGCCCTTGCTTGCGTTGTTGGCACCGCGTGATTTTGAATCACGAAG
CAGGCGTGTACATGGCGAACGGCCGCGGAGATGCGGCGTTCCTGTTCCTT
CAGCCGTATGCCGACTCCTTCTGTACCGTACGTGCTGCGAAGGAGTGGCA
TACAGCAGTATGGCTGCACGTGAAGTGTCCGCACGGAAATACCGCTGTTG
AACGGCTCATAGATCCCGCTCTCTCACCCGTTCTCCCCCCTTTCCTCCAC
GTACACACCGAAAGCTGTGCGTGTTTTGAAAGCTTACCGCCATGCCAGCG
ATCGAGTTCAAAGCCATACTAGCATCTTTCACTTGTTGTTGGTTGAAAGG
TACTCACGCAGGATACGGTGGTCAGGTCAAGCCCTCCCGTTATTTGACAC
CTCAGCGCATACATCAGCAGTGTACATGGAGGGGACCCTTCCCACTAGAT
CCCCTCGTACGCGGACAATCTCGTTTTCCAAAGTCAAGCCCACACGCGCC
AGCCCACAAAGCGAACGGCCTGCTCTTTCCCAGTCCCGAGGGATGTCATT
CAGCCCTAACATTTACTTTTTGAGGGTACGGCAGTGTAGTAACAGCAGTT
TTGCTTCATGGGCATATGGGGGGCAGAGCAGTCACGCACGTACATCGAGC
CCATGCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCATGCCCCCCCCCCCCCACTAATTAAGAGGGCGAAGACC
TGCGTTATTGGCCCGGCCCAGGCTCCATGCACCCCCTTCAGCGCCCCGAC
TGGCGCGTGTGCGAGCCCGGGGCATGATGCCCTTACCTGCCTTGTCTTTT
TTTTTCAGATGTCAAAGATAAATTGAACGCTGAACTGGATTCGCGCAGCG
GCAGGACGTGTGCGTCCGGGGGTTGTTCGCGCCTCAAAAAAGTGTGGTGT
CGACGTGCTGTTGGAGGCGCTGGCTATGTGACCTGCCGACCGAGTCCTCT
CAGGGGTGGATGTACGCGTGCTTGGACGAGGTCCACTCGTGGTTCGATTG
CGTGCTTTTCCTCGCTAGCAGCAGGGAGATAGGTGTGGGGCTTTCCTACG
ACGATGTCTCCGCCATGAAGCGTCTACAGCATGTCCTTAACTCTCGTTTG
AAATTCAAGACTACCGCTCCGTCCGGAAACATTAGGCAGATTTGGAGTTG
TGGTAGGCCAAAAAGCAGCAGCCACGTTCGCTAGGAGTGCCGGGTGCGCC
TAGCTGTCTCCGTACGGCATGTTCTTGGATCGAGTTGACTTCGTCTGCGT
GTACAGTCGTCGTTCTTGGATCGAACGAAGTAAATGCACCAAGTGAACCA
CTCGTCGGCCCTCTTCCCTCCCTCCCTCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCCCCTCCCTTCGAAACAACAAACTTGCATGCTCTATTTACATCACA
CCGAGGTGTTCACACCAAACAACAACGCCACAAACACCGCTCTCGCAGTT
GTAAACGCCCACACCAGCAGTATTTAACTGCAGTTGCTTAGTGGTGCCTT
CCTACCATCGTGCTTCTCCATTCATTTACCCCCCGCTCTCCTCTCCTTGC
GCGCCCCGCCCTCGGCACTGGCGCTCAGGACTTGATTGAGACGGTCATCA
GCACCATTCAAGAGCCCGAAGTCACGGAGGCCGGCGTCGCGGCCGTAATG
GCGAGGCTCCAGGCTTATAGCGACGGGATAAACCGGCTCATCGAGACCCT
GCCGCCAGAGGCCGCCAACGGCAACGAGGGGGGCGTAGGAGTGGGGCGGG
GAGGGGTTTGATGAATACTAAGCTTATGGGGTGAGATTATGTTTCACTTG
GAGGGAGAGCCGCGTATGTATTAGTAGTATTCTACTGTCCTTTTTTTTTT
TGTACAAAGCTCGTTCCTCTTTTTACTTCTGCGCGCCGGTATTGCTACCG
CTTCCGGAGTTTCCCCTTGATCTGAGACTGCGTTTTGGTGGTCGCGACGA
GGATCAGCCGTCGCTCTCTCCCTCGTTCTCAACCGCTGTCGGCTGGCTTG
CATTGTACGGCATTCCCTTGAGCGCGGGGCTTGATTTTATTGAGGTAGAC
TTATCGGCAATTGCTAGTTCCGTGTGCCCCGGCGATAATTGCAGTTTCTT
GGCTGGTGCTGGTGCAATCGGCCTCGGGGCCTGTCGGGTGCTATTTTCCG
TCGTGCCATACAATGAATTTCGATTCCCAACGCAAGAGAGGAGGAGGGCA
GGAGGGAGGAGTTACTCATTTTTTTCGTGTAGTAATTTATGAGCGTGGAT
TGTTCATGCATTTTGGTAGAGACGGAGCACCGTTCTTTGTTAAGGGGCTG
AGGGCGGCGGGGGGCTTCGTCGCGGCATATTAGCGCCAAGACGGCGAGTA
AGCGTCCGCTCGGTGAAGCTTGCTCGCAGAGCTCCCGGCGGGCACGATGT
GTCGCTGTCCTTGCCAATGCGAGAGACGGCAATCAGCACATAAGTGCTTA
GGCGGGCGGTAGAACTTCTCTCGGCATCAGGGAGTATGCCTTGGAAGGTG
TGTTGTCCATAGGAAAACCCGAAAGTGGCGTTTTGTAGACCGGGCTGGGG
GCCCCCCGTCCCCTTCGTCTTCCTCGTGCCTCAGAGAGCGGTATCAGTAC
CATGCTGTAATCTCTGCGAGCCAACTTTTATTACCCAATAATTACAAGCT
GTCCGTGACGATATTTGTGGCTCTGTTTCCGTGAAAAACAGCGTTTGTTT
TTCTGGCAATGTTGTGGTGAGCCTAGCAGCAAGTTTTTTTTGCCTCCTTA
GAGGGGACAGGAAGGACGCAAGCAGCAGGGTGCCCCCGGCCTCCTCGTTG
TTGTTATATCCTTCGGCGTGTGCGTGTGTCGTGTGTTTTGTGTGTGTTGC
GTGTGCGCGTTAATTTCCCCGCGTTTCTCTGGGCCGCCACAGAGACGCTC
CCTCGAATGACACCGAACATCTCTCCCCAGCCGGGAGAAAACCCGGAAAT
GTTCCGTTTGTCTTGGTCTCGGTACTGTACTGGTTCGCGGGCAGCCCTGC
TGTCTCTTAATTCGACCTAGAACGGGATACACTCCGTACTCCTTTTTTTG
TGTTCCTCTCGCCATATGTGTGTATGGAGATGATTAATACAGGGTGTTAG
TCGCGCGTATAGTGCTGGCTGGGGTTGCTTGCTGTACTGTTGTTGCTGCG
GCCAGGCCTTAATATTCGTGAAACATCCATTGTCCTTGTCGTAAAATGTT
GTTGTCAGAGAGGGAGGGAGAGAGAAATAGAAATACCGGTCGTCTTAGTC
GAGCTGTGCGCCCGCGTACACTTGGTATGGATGGAGATTTTGGTGGGTTG
GGATTTCATGTGGTGGGACCAAGGGGGGGTTAAGGAATGATATCTGGCTC
CCACGCTAAACATTCCAGTCGTTGTTTTTCGGAGTGGGCGACTTGCGTTG
TGGGCGAGAATGAACGCAATAAGCGGCGGGTAGTGATGGCTGTCTGTCTC
ACCTCAAAACGACGAGCCCGAATCTGAATCCACACGCTGCCGCGTCTGGT
CATGCTGACTCGGTGTGCGAAGACGGGAGACGACGACGACGGTCGGTGAG
CCGGGCCTGCGAGCTGCCCCGCGCGCTTGCCTCATCATAATTTTTTTGCC
GGGCCAATGGCGCGCCTTTCCTCGTTCAGCCCGGTGTGGCGTCGGTGAGG
AATTTACACGCCTATTTCCGCAACACCTTGCACCCTCTTTTAGTGCCGTC
TTTCTTTTTCCTGTTGTGTTGTGCTGGAAGGCCCGGGGTTCGTTGTGGAA
TTCCTACTCTAGCAATAATCCGTCACCAGGTTCTTAGTTGTTGTAACCGT
TCAGGTCTCTAGGCTCTATTCGTTTTAACGTCAGTACCAGTCCAACGGAC
GGGGACGCCTTCCGTAGCCTCTGGCACATCTTGGATATCAAGTTGACTCT
AAGATATTATAATGATGTTTTCCATTGTAACAACTTCGCGCAATAACGTC
TCGGGCATCATCAAATGATTCTGAGT

Coding sequence (CDS) from alignment at Scaffold_463:67856..72431-

>EsuBft999_3a-0001 ID=EsuBft999_3a-0001|Name=EsuBft999_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=276bp|location=Sequence derived from alignment at Scaffold_463:67856..72431- (Ectocarpus subulatus male Bft15b)
ATGTTGCCAACAGCACAACCAGCGCCAGCAATAGATTCCTCCGTGAAAGC
GGAGGTGAAAGTGGAGCCGACGGGGGTCGTCAAGCAGTTCGAGGACTTGA
TTGAGACGGTCATCAGCACCATTCAAGAGCCCGAAGTCACGGAGGCCGGC
GTCGCGGCCGTAATGGCGAGGCTCCAGGCTTATAGCGACGGGATAAACCG
GCTCATCGAGACCCTGCCGCCAGAGGCCGCCAACGGCAACGAGGGGGGCG
TAGGAGTGGGGCGGGGAGGGGTTTGA