EsuBft999_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft999_11a-0001
Unique NameEsuBft999_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_463contigScaffold_463:3239..8306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft999_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon9
Length192
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft999_11aEsuBft999_11aEctocarpus subulatus male Bft15bgeneScaffold_463 3239..8306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_11a-0001EsuBft999_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_463 4055..8248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_11a-0001-exonagat-exon-91890Ectocarpus subulatus male Bft15bexonScaffold_463 3239..4210 -
EsuBft999_11a-0001-exonagat-exon-91889Ectocarpus subulatus male Bft15bexonScaffold_463 4780..4848 -
EsuBft999_11a-0001-exonagat-exon-91887Ectocarpus subulatus male Bft15bexonScaffold_463 5096..5200 -
EsuBft999_11a-0001-exonagat-exon-91892Ectocarpus subulatus male Bft15bexonScaffold_463 5834..5962 -
EsuBft999_11a-0001-exonagat-exon-91888Ectocarpus subulatus male Bft15bexonScaffold_463 6249..6275 -
EsuBft999_11a-0001-exonagat-exon-91886Ectocarpus subulatus male Bft15bexonScaffold_463 6390..6416 -
EsuBft999_11a-0001-exonEsuBft999_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_463 6527..6533 -
EsuBft999_11a-0001-exonagat-exon-91891Ectocarpus subulatus male Bft15bexonScaffold_463 6582..6907 -
EsuBft999_11a-0001-exonagat-exon-91893Ectocarpus subulatus male Bft15bexonScaffold_463 8042..8306 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_11a-0001-exonagat-three_prime_utr-23916Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_463 3239..4054 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_11a-0001-cdsEsuBft999_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_463 4055..4210 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft999_11a-0001-exonagat-five_prime_utr-15600Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_463 8249..8306 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft999_11a-0001 ID=EsuBft999_11a-0001|Name=EsuBft999_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1927bp|location=Sequence derived from alignment at Scaffold_463:3239..8306- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCTTCGCCCTCCCCTTCCGTCCCTCACCTTCGTGCGCCAACTTATACTC
CTACTGCGATGTCTCACCGCGCTATTCCCCGAACGACCTCTGCGTCACCT
CTCAGCGCCGTCAATGTCAACAACCATCAACCCAGAGGGAGGATGGCCAA
GGCTGCGGCATCCCGTACACCCAGCAAGGAGCCGGTGGCCAAGACCAAGG
GCGCGGGCCGACGCAAGTCGGTCTCGAAGAGGAGGAAGGTTCTGCGGTCT
AAAAACCCACCGATGGACTCATGGACGGGGATGCCGACTCTGTTCTATTG
CTGTTGCAAGGTGTTCTTCTGCATTAGGGTTTATGTCACCACCTACCCGT
CGCCCCCCGGTTCGTCGATAGGGTGTTGGAGCAGTACTGAGTTTCACGTA
GTTGCGCTGTACCGATCAGAAGTGATACACCAACTGCCGCAAAAAGCTCC
GCGCGGCAGCTCCATACGTGTCCCGGGGCCACTCCGGCGTTCAAGTAACC
GCTCGCCCGGTGCTATTCTAGCCCGGGGTCCGAGAGTGTTGTGGGCGAGG
AATATCCTCACAGCAGTGCTGCTTTCTGCCGCCCTCCCTCCCTGCACGGT
CGCGGACATCGACCCCGCTGCCGAGGTCGCGGACATCGACCCCGCTGCCG
AGGCAATTAATACCTTGCTTCACCGCGTCATGTGGCGCTACACCAAGGCC
CACATGCAGTCGACACGCGAGGACCTGTCCGAGGGGCAACTGGTCGGCGA
GGACCGGCTTCACGAGGACTTCCTCGCGCAGCTCACTCGAGAGCGTCGTG
TGCAAGTGCACGAGGAAAGCGAGGGCGTGGGGGAGGCTTTCCAACGGCGG
GTACAGCTTCACAAACGCGAAGGCATTCCAGGAAGGGCGGGAGCCGTCAA
CAACTTTGTGCACGTCGAGAGTCAGCGGTCCTGCTGGTTTGGTTTGAAGG
AGCGGTTCATGGCGGGCCCCCGTCGCCACGCTTCCGGAATCCTGATCATC
CCCAAGTCGGACTTCGGGAACCCCAAGATCATGCGCTTCCTGTCCCCATA
CGTCGGCGGCAACGACAACCTGGTCGTGGAGGAGACCCCGGCCGAAGACG
TCCACTTGTAGGACTCCGATCTCGGCGCATATCTCGTTGAGATGAACTGA
TCGTTGTTGTTGATTGGTCCTTCACAAGCTCAGCATCTGCATGGGTCGCG
GAATTGCTGGCAAATGTTCTCGGGCGTAGCGCTTGCTGTGGTGTTAGGTG
GGGAGCAGGTTTTTTGTCGCGTTCGGCAATAAGTTTATTTCGTCACTGTT
CCTTTTCGAGCAACGCGTGAAGCGCGTGGAGATCGATACGCGCCGGCGTA
CCCTGGACGTGGTACACACAACGCAGAAATGTTCCTCCGTGTCGCCGGGG
GTAGGGACACCTCAAGTATTGAGGTGCTTCGCGGACAAGGGGTCAAGTAG
GTTCGGTCGAGCTTGATTGAACTCATGGAGTTTTTAGTCTGGACGCACAA
AAAAGTGTCGGCAGGAGCGTGTACACGCCAGACTGGTTGCGTGGAGCTAG
GGGCATGGAGTGCAATTTTTTTATGGTTGGAACTATTTGTTTTCTTCCCG
TGTTTTCTTGGATCTTCGTCGAGCGTGTGGCTCACCATGCGTCCTGATTT
GCTTGGTGCACGTCATGGACGTGTCGTGCACATTCACATTCCGTTGAAAG
CGTGGCAATCAAGTTGGGGTTGTGAGCCCCACCATTGCATTTGCGTGATG
TTTTTTGGGTTCTGTGACGAGCATCGGGCACACTCTTAACATTCTTAACA
TTCTGCTTCACGTGTGGATTCGACCCTGACGCAGAAATGACTGTTGACAG
GATGCCGAGTCGATCTGTGCAGAGGATGCGCGTGATAGTCGTGTCGGCGT
TGGTGCTGTACGATTGAGCGACGACAT
back to top

protein sequence of EsuBft999_11a-0001

>EsuBft999_11 ID=EsuBft999_11|Name=EsuBft999_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=350bp
MSHRAIPRTTSASPLSAVNVNNHQPRGRMAKAAASRTPSKEPVAKTKGAG
RRKSVSKRRKVLRSKNPPMDSWTGMPTLFYCCCKVFFCIRVYVTTYPSPP
GSSIGCWSSTEFHVVALYRSEVIHQLPQKAPRGSSIRVPGPLRRSSNRSP
GAILARGPRVLWARNILTAVLLSAALPPCTVADIDPAAEVADIDPAAEAI
NTLLHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQLTRERRVQV
HEESEGVGEAFQRRVQLHKREGIPGRAGAVNNFVHVESQRSCWFGLKERF
MAGPRRHASGILIIPKSDFGNPKIMRFLSPYVGGNDNLVVEETPAEDVHL
back to top

mRNA from alignment at Scaffold_463:3239..8306-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft999_11a-0001 ID=EsuBft999_11a-0001|Name=EsuBft999_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5068bp|location=Sequence derived from alignment at Scaffold_463:3239..8306- (Ectocarpus subulatus male Bft15b)
TTCTTCGCCCTCCCCTTCCGTCCCTCACCTTCGTGCGCCAACTTATACTC
CTACTGCGATGTCTCACCGCGCTATTCCCCGAACGACCTCTGCGTCACCT
CTCAGCGCCGTCAATGTCAACAACCATCAACCCAGAGGGAGGATGGCCAA
GGCTGCGGCATCCCGTACACCCAGCAAGGAGCCGGTGGCCAAGACCAAGG
GCGCGGGCCGACGCAAGTCGGTCTCGAAGAGGAGGAAGGTTCTGCGGTCT
AAAAACCCACCGATGGTAGGTTGAGAGTTCGCCTGTGCTTGCTTACTTGA
CCACGCGAGTTGTGTTTCTACCCTTGCGTGCAGCATGCTAGAAAAAAAAA
CTTGTTCATCTCTTCCATGAGTCTAGAATGCATATGCTATTCTAATACAG
AGATAAAAGTAGGATCGAAACATGTATCCGATGCATAGCTGCAGCAAGTT
AATTTCCTGCCGCAGCAATTGCAGGTTTGAGCAGTGCGCCGTCGTGTTGG
CGCACATGATATTCTGAGAATCGCCGTGCCCGAAAGTCGTGATCACCGAT
GTAAGGTTTTGAGCACCTCGTTTGTCGTGTGGTCTACATCCACCGGTTTA
AATTCGATGTTGTGCACAGGCGCGCGGACGTTGCATTTGTCCCCAATGTG
TACTTCATTCGGTAGTCAAAATTCCTCAGACTCCGTTCTGACCGCGACGC
GAGTTCTTCTCCCCCCCTATAGCAATACTCTAAAGACAAAGACAAACAGT
AATGCGTTCCCCAAACAAAAATAATTAACTATGATTTCGGTTGCAACGCA
CGAACGTTTGTGTTGGCCCCAATTTTGCCTTTGAGTATTCGTTGTGCCGG
TTGTGGGTGTGTGGAACATGTGTATGTGGACCAGACATTGTAGCTACTCC
CAACACAACGTTTGACGAGAAGAGCCGGAATAAGACCCCCGCAACAGATA
CGTACGGGACACAAAAAAACAGAGCAGATGCGTCATGAATGGAAGCGGTT
GTTCCGTGTATCCGACTCATACTTGCATAGTCTGGACGTTCCCCGGTTGT
ACCCTCCGCGGTTTACGGAAGCACACTGATGAATGGTGTACGATGAGAGC
CTTTCGACAAAATGGCGCGATTTGAGCTCGTTGCCGCTGCAACCGCCCTC
TATATCCGTTCTCGATGAACTCCGCATTGCAAATCGTCCGATATGTCACC
TTTTTTTGGAGCACCCTAAATTGGTCGTCGGTCTTTTGTTAAACAAACAC
ATTTCTATCTGAGGTGCAACACGTGACAAACTCGTACACAGAGACAGTAA
TGCCCGAGACATGTCAATTCTGTTCGACTAATCTTGGTAGCAACCTCCGT
GCACACCCTATCCCTACGTGCCGCCACCCTCTCCGTACTTTGACGGCAGG
ACTCATGGACGGGGATGCCGACTCTGTTCTATTGCTGTTGCAAGGTGTTC
TTCTGCATTAGGGTTTATGTCACCACCTACCCGTCGCCCCCCGGTTCGTC
GATAGGGTGTTGGAGCAGTACTGAGTTTCACGTAGTTGCGCTGTACCGAT
CAGAAGTGATACACCAACTGCCGCAAAAAGCTCCGCGCGGCAGCTCCATA
CGTGTCCCGGGGCCACTCCGGCGTTCAAGTAACCGCTCGCCCGGTGCTAT
TCTAGCCCGGGGTCCGAGAGTGTTGTGGGCGAGGAATATCCTCACAGCAG
TGCTGCTTTCTGCCGCCCTCCCTCCGTGACCACAGCAGTCATCATCAAGG
CCGTCGTTGCAGCCCGCTCAGAGCTGCACGGTGATGTGCGCGGCGCCCTC
GTGGACTTGTTGATCCCTATCATCGAAGAAGAGGCGGCCGCGAACAACCC
GCGGACCGCCGCCGACCTCTTGCGTGGGGTCCGCGAGCAGGTCGCGGACA
TCGACCCCGCTGCCGAGGTAAACATGCCTGACAATCATAACATGTACGTG
GAACTCCAACGTAGATATGCCACTTCGTAGAATCGTGCGGGCCTAGTCAC
CACATGCTTGCNGCGTGGGGTCCGCGAGCAGGTCGCGGACATCGACCCCG
CTGCCGAGGTAAACATGCCTGACAATCATAACATGTACGTGGAACTCCAA
CGTAGATATGCCACTTCGTAGAATCGTGCGGGCCTAGTCACCACATGCTT
GCGCCCACATTTTTCGTGCCACTCTCACATCGTAAGGAAAGACCATGTGA
CAATGTTTTAAAAGACTAACGTACGCGAATTCTTGTCTACAACTCACCTT
ATCGATTGCACAACGTTCCCATTAACCACTACGATCAGATACTTTCGTGT
GATTTATTGGAACCTCTTCGCCCGGTTCTGCTCCAATGTTGCAGGCAATT
AATACCTTGCTTCACCGCGTCATGTGGCGCTACACCAAGGCCCACATGCA
GTCGACACGCGAGGACCTGTCCGAGGGGCAACTGGTCGGCGAGGACCGGC
TTCACGAGGACTTCCTCGCGCAGGTGACTCATTGTTCAAGTCTGTCCTCC
GTCTCAAACTTCGGCGCTTGTGCCGGGGCATCCGNTTGCTTCACCGCGTC
ATGTGGCGCTACACCAAGGCCCACATGCAGTCGATACGCGAGGATCTGTC
CGAGGGGCAACTGGTCGGCGAGGACCGGCTTCACGAGGACTTCCTCGCGC
AGGTGACTCATTGTTCAAGTCTGTCCTCCGTCTCAAACTTCGGCGCTTGT
GCCGGGGCATCCGAACTACGGTATGCCACCCCACTCACGTTGTAAGAGAA
AGTTCCAGCGGGCAGCAGGTCAATGTAGAGACATGAACATCTAACTGAAC
TCCTCAGCATGTACGACCATGTGCGAAAGCTCCGATTGTATCGCAGGTAG
TATCCGTAGGAAGCAGCAGCAGGGTACACGCACTGCAAGGTTACATGTTT
CCAGATGCATGCACTCGTCAGTAGCACCGCACCGTTCGGCAGCACAACTT
GACTCCGTCTGTCACCACGCCGCAAAAATGACTACGATGTTGCGCAGACG
ACCGATACCCCCCTGCCTGCTCGCGTCATGTTACACACCAGGTGGCCACG
CCGGCGCTGCTGCGCGCGGCGAACGACATCGCTGCCCTCCCGGTGGCGGA
GATCAGCTCACTCGAGAGCGTCGTGTGCAAGTGCACGAGGAAAGCGAGGG
CGTGGGGGAGGCTTTCCAACGGCGGGTACAGCTTCACAAACGCGAAGGCA
TTCCAGGAAGGGTGAGTTTTGTCGAACGGACCTTTCTTCAACCCCAACTG
ATGTTGGGTTGTGTATGTCTCCGTCAGCTAATTGCTGGGCGGATTTTCTC
CAATTCTGACTTGTGGTGAAATGAGCTTCTTCTAGTTGAGCATGAAGCCA
AGAACCGCGTACCCGTCTTTTTTTTTTCTTGCCGACGTTGCCAAATCGGG
GTGTGGGATTCTCCATTGAGAGTCGCACGGTAGTTCTTGATTTTCTCGCA
ATATGTAGGCGGGAGCCGTCAACAACTTTGTGCACGTCGAGAGTCAGCGG
TCCTGCTGGTTTGGTTTGAAGGAGCGGGTAACATGTGCGTGACATGAAGC
ATGCTGTGAGTGCCCCCCCCCCCTGCTGTTCCTGGGCACCGTTGTTTGGC
CTCTTCACCCCCACCTCCACCCTCACCCTCCTACCCCTTGGTAAACGCAG
GAAACTTCACGACAGTGTTGCCAAAAGTCTTGAATACCGACTGCCCTGTC
ATCTTGACCGACGTTTGTGAACTTTCGATATCGTCAGCTAGCAAGCTTCT
CCAAGCCCTGTTTTTTCGTCACGTGTTTGTCGTGTTCCGAAGTATTGTTT
GGTGCAAATGCTGTATTTCTGCAAGTTTCGGAAATCCCCGATAGATTCAC
TCCGGGGGTAGTTTTCTCTTTTGTTTTATTATCCCCCCACCTCCTACTCT
TGTGCTGTTGTCGTCAGGGAATACAAGGCATTCTTGTGTTGTTATGCTCG
TCATGCGCTTGTGCCTGTCACTCCATTTGCCGAAACGAGTTTTCGTCGCT
CCTTGAGCCATACATCAACTTTATCTCATGTTGCGTACCTATGCCTTCCC
TTTCCCCACGTGATTTTCGGACCAGATCTGATACTCCATCCTCCAGTTCA
TGGCGGGCCCCCGTCGCCACGCTTCCGGAATCCTGATCATCCCCAAGTCG
GACTTCGGGAACCCCAAGATCATGCGCTTCCTGTCCCCATACGTCGGCGG
CAACGACAACCTGGTCGTGGAGGAGACCCCGGCCGAAGACGTCCACTTGT
AGGACTCCGATCTCGGCGCATATCTCGTTGAGATGAACTGATCGTTGTTG
TTGATTGGTCCTTCACAAGCTCAGCATCTGCATGGGTCGCGGAATTGCTG
GCAAATGTTCTCGGGCGTAGCGCTTGCTGTGGTGTTAGGTGGGGAGCAGG
TTTTTTGTCGCGTTCGGCAATAAGTTTATTTCGTCACTGTTCCTTTTCGA
GCAACGCGTGAAGCGCGTGGAGATCGATACGCGCCGGCGTACCCTGGACG
TGGTACACACAACGCAGAAATGTTCCTCCGTGTCGCCGGGGGTAGGGACA
CCTCAAGTATTGAGGTGCTTCGCGGACAAGGGGTCAAGTAGGTTCGGTCG
AGCTTGATTGAACTCATGGAGTTTTTAGTCTGGACGCACAAAAAAGTGTC
GGCAGGAGCGTGTACACGCCAGACTGGTTGCGTGGAGCTAGGGGCATGGA
GTGCAATTTTTTTATGGTTGGAACTATTTGTTTTCTTCCCGTGTTTTCTT
GGATCTTCGTCGAGCGTGTGGCTCACCATGCGTCCTGATTTGCTTGGTGC
ACGTCATGGACGTGTCGTGCACATTCACATTCCGTTGAAAGCGTGGCAAT
CAAGTTGGGGTTGTGAGCCCCACCATTGCATTTGCGTGATGTTTTTTGGG
TTCTGTGACGAGCATCGGGCACACTCTTAACATTCTTAACATTCTGCTTC
ACGTGTGGATTCGACCCTGACGCAGAAATGACTGTTGACAGGATGCCGAG
TCGATCTGTGCAGAGGATGCGCGTGATAGTCGTGTCGGCGTTGGTGCTGT
ACGATTGAGCGACGACAT
back to top

Coding sequence (CDS) from alignment at Scaffold_463:3239..8306-

>EsuBft999_11a-0001 ID=EsuBft999_11a-0001|Name=EsuBft999_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1053bp|location=Sequence derived from alignment at Scaffold_463:3239..8306- (Ectocarpus subulatus male Bft15b)
ATGTCTCACCGCGCTATTCCCCGAACGACCTCTGCGTCACCTCTCAGCGC
CGTCAATGTCAACAACCATCAACCCAGAGGGAGGATGGCCAAGGCTGCGG
CATCCCGTACACCCAGCAAGGAGCCGGTGGCCAAGACCAAGGGCGCGGGC
CGACGCAAGTCGGTCTCGAAGAGGAGGAAGGTTCTGCGGTCTAAAAACCC
ACCGATGGACTCATGGACGGGGATGCCGACTCTGTTCTATTGCTGTTGCA
AGGTGTTCTTCTGCATTAGGGTTTATGTCACCACCTACCCGTCGCCCCCC
GGTTCGTCGATAGGGTGTTGGAGCAGTACTGAGTTTCACGTAGTTGCGCT
GTACCGATCAGAAGTGATACACCAACTGCCGCAAAAAGCTCCGCGCGGCA
GCTCCATACGTGTCCCGGGGCCACTCCGGCGTTCAAGTAACCGCTCGCCC
GGTGCTATTCTAGCCCGGGGTCCGAGAGTGTTGTGGGCGAGGAATATCCT
CACAGCAGTGCTGCTTTCTGCCGCCCTCCCTCCCTGCACGGTCGCGGACA
TCGACCCCGCTGCCGAGGTCGCGGACATCGACCCCGCTGCCGAGGCAATT
AATACCTTGCTTCACCGCGTCATGTGGCGCTACACCAAGGCCCACATGCA
GTCGACACGCGAGGACCTGTCCGAGGGGCAACTGGTCGGCGAGGACCGGC
TTCACGAGGACTTCCTCGCGCAGCTCACTCGAGAGCGTCGTGTGCAAGTG
CACGAGGAAAGCGAGGGCGTGGGGGAGGCTTTCCAACGGCGGGTACAGCT
TCACAAACGCGAAGGCATTCCAGGAAGGGCGGGAGCCGTCAACAACTTTG
TGCACGTCGAGAGTCAGCGGTCCTGCTGGTTTGGTTTGAAGGAGCGGTTC
ATGGCGGGCCCCCGTCGCCACGCTTCCGGAATCCTGATCATCCCCAAGTC
GGACTTCGGGAACCCCAAGATCATGCGCTTCCTGTCCCCATACGTCGGCG
GCAACGACAACCTGGTCGTGGAGGAGACCCCGGCCGAAGACGTCCACTTG
TAG
back to top