EsuBft998_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft998_7a-0001
Unique Name	EsuBft998_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:223479..225279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft998_7
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	180
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft998_7a	EsuBft998_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 223479..225279 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_7a-0001-exon	EsuBft998_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 223479..225279 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_7a-0001-exon	agat-five_prime_utr-15598	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_49 223479..223563 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_7a-0001-cds	EsuBft998_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 223564..223893 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_7a-0001-exon	agat-three_prime_utr-23914	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 223894..225279 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_7a-0001	EsuBft998_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 223564..223893 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:223479..225279+
coding sequence from alignment at Scaffold_49:223479..225279+

spliced messenger RNA

>EsuBft998_7a-0001 ID=EsuBft998_7a-0001|Name=EsuBft998_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1801bp|location=Sequence derived from alignment at Scaffold_49:223479..225279+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTGTGTTTCGCGATCTGGCAGACCCCGCAAGGGGAGAGACTGTCGC
GATAGTCCACCCCGGTACCCGTGTCCTTCCGAAGGATGTCCAGGCTCCGA
GCATTGAGATGTCCAAGCCTCCTGTGCCAGGTGTCCGCGCTCACTAGCGT
AAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTGCTTCTGGTGGGGCA
CGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGCTCGAACGTGATGTCG
AGGGTGCACATGCCTTGGTCTCGCGGATCTTGTGTGAGTGGAATCACCTT
GCCTTGGATAGTGAGGTGCGGAGTGCTCTCTTCGACGACGCAGCGCAACC
CCTTTTTCAGGAGGGAGGTGGGCAAAAAAATGTTGCGACAGAGTCCCGGA
ACGTTGAGTCCCTGAATCCGCACGCGCAATTGCTGTCCTCGATTGTCCTT
GACGGTGCAGTGTAGGATGCCCGTGGCCGTGCCTTGGAGTTGGCTTTCTT
CGGCCACGTCCACGATCTTTGGAGAGTTTCGCTGGGTGTAATCGTGGAGG
TTTCCGTCGGGGATGAGGCGATTGTCAAACATGGTCTCCGATGTTCCCGT
GTCTACCAGCAGGCCTACCCCGGTGGAGCTCGCGGCGAAGTTGCGCCCTG
AGATGCGGGAACAGGTGCCGAACATGAAGCCGCTGTCAAAGGCGTCCTCG
TCCCGGGTGAAGTCGACAACTGCCACTTCATTGTTTGAGTCGTGCTTGTT
GGACGCCGACGAGCAGTGAGTGCAGTTGGAGCACGCGGTGAATGCTTTAC
TTGAGTCCTTGGTGTCTTCCGGGCGCTTTCCTCCTTGCTGGTAGCATTCC
TCGTCCGAGTGAGACGTGGTGTTGTGCTTCGAGCACCACTTGGTAGCTCC
GGCGGGCTTCGTTATCTTCTTCGCCCTGTTCTTGATCTTGGGGCAGTTCC
TCCTGATGTGCCCCGGCTCGTAGCAGCTGTGGAAGATGATGTCAGACGCG
GTCGTTGTCATGGCAAATCCTCGACCAGCTATGCGTCCCTTCCGTCCCTT
GCGCGATTGTTCGTCCAAGAAGATGTTGCGCATGGTGGATTGCATGTCCA
GGACGTTGAAGGTTGGGTCTCTGAACACCATCAGTTTGACGTCCTTGTAT
TCGTCCGAGAAGCCCTGTACGCAGATGTCCTTGAAGCAGCGGTCGGAGAT
GGGTTCTCCCATCTTATCCAGGTGGGTGCGAAGTAGGTGCTTCTGGTTGA
AGTAGTCGTCGGGATTTTCAGCAGGGTTCATGGGGTTGTTCTCCAGCTCC
TCCATCTTGGCCCTGATGACCTCGTCCGTTACCCTGTCATAGTTGTTGCA
GAGCTCCTCGAAGGCAGCTTGTCCGTCGCCGCTGATGCCAGTGTCGTCTT
CGTGCTTCTGTATCGACAAGGCGGCTGGAAGTTCCACTAGGAGGAAAAGA
ATGGCGTAGAGATCTTCGTTTGCCCTTGTGTAAGAGTCGAAGGCCGCTGT
GTCTGCGGGATCTGGCTTCCTTTGTTTCTTCAGCAGTGGCAGGATGTCCT
TCCTGGTCACACCTAACACCACGCAGAATTTCTTCATCCATGTCTTGAAC
TCAGCTGGGTCCTTTCCGTCGAATTTCTTGAGGCCTTTGATCACGGTTGC
CAGGTTCGTAGAACTATCGCTGGCGAACGCGCTTCCACCTCCTGTGTTGC
TCGTTGCAGTATCCATTGCTCGTTCCAGCTTTATTTTCTTCGTCTTGATA
AAAGTACTTCCTGCTGTAGGAGTAAGTTTGCTCGTGGTACTACTGCCTGT
A

protein sequence of EsuBft998_7a-0001

>EsuBft998_7 ID=EsuBft998_7|Name=EsuBft998_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MSRLRALRCPSLLCQVSALTSVKQTAFAVWVCDCFWWGTRDFVPDGWTFC
SNVMSRVHMPWSRGSCVSGITLPWIVRCGVLSSTTQRNPFFRREVGKKML
RQSPGTLSP

mRNA from alignment at Scaffold_49:223479..225279+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft998_7a-0001 ID=EsuBft998_7a-0001|Name=EsuBft998_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1801bp|location=Sequence derived from alignment at Scaffold_49:223479..225279+ (Ectocarpus subulatus male Bft15b)
CTGCTTGTGTTTCGCGATCTGGCAGACCCCGCAAGGGGAGAGACTGTCGC
GATAGTCCACCCCGGTACCCGTGTCCTTCCGAAGGATGTCCAGGCTCCGA
GCATTGAGATGTCCAAGCCTCCTGTGCCAGGTGTCCGCGCTCACTAGCGT
AAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACTGCTTCTGGTGGGGCA
CGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGCTCGAACGTGATGTCG
AGGGTGCACATGCCTTGGTCTCGCGGATCTTGTGTGAGTGGAATCACCTT
GCCTTGGATAGTGAGGTGCGGAGTGCTCTCTTCGACGACGCAGCGCAACC
CCTTTTTCAGGAGGGAGGTGGGCAAAAAAATGTTGCGACAGAGTCCCGGA
ACGTTGAGTCCCTGAATCCGCACGCGCAATTGCTGTCCTCGATTGTCCTT
GACGGTGCAGTGTAGGATGCCCGTGGCCGTGCCTTGGAGTTGGCTTTCTT
CGGCCACGTCCACGATCTTTGGAGAGTTTCGCTGGGTGTAATCGTGGAGG
TTTCCGTCGGGGATGAGGCGATTGTCAAACATGGTCTCCGATGTTCCCGT
GTCTACCAGCAGGCCTACCCCGGTGGAGCTCGCGGCGAAGTTGCGCCCTG
AGATGCGGGAACAGGTGCCGAACATGAAGCCGCTGTCAAAGGCGTCCTCG
TCCCGGGTGAAGTCGACAACTGCCACTTCATTGTTTGAGTCGTGCTTGTT
GGACGCCGACGAGCAGTGAGTGCAGTTGGAGCACGCGGTGAATGCTTTAC
TTGAGTCCTTGGTGTCTTCCGGGCGCTTTCCTCCTTGCTGGTAGCATTCC
TCGTCCGAGTGAGACGTGGTGTTGTGCTTCGAGCACCACTTGGTAGCTCC
GGCGGGCTTCGTTATCTTCTTCGCCCTGTTCTTGATCTTGGGGCAGTTCC
TCCTGATGTGCCCCGGCTCGTAGCAGCTGTGGAAGATGATGTCAGACGCG
GTCGTTGTCATGGCAAATCCTCGACCAGCTATGCGTCCCTTCCGTCCCTT
GCGCGATTGTTCGTCCAAGAAGATGTTGCGCATGGTGGATTGCATGTCCA
GGACGTTGAAGGTTGGGTCTCTGAACACCATCAGTTTGACGTCCTTGTAT
TCGTCCGAGAAGCCCTGTACGCAGATGTCCTTGAAGCAGCGGTCGGAGAT
GGGTTCTCCCATCTTATCCAGGTGGGTGCGAAGTAGGTGCTTCTGGTTGA
AGTAGTCGTCGGGATTTTCAGCAGGGTTCATGGGGTTGTTCTCCAGCTCC
TCCATCTTGGCCCTGATGACCTCGTCCGTTACCCTGTCATAGTTGTTGCA
GAGCTCCTCGAAGGCAGCTTGTCCGTCGCCGCTGATGCCAGTGTCGTCTT
CGTGCTTCTGTATCGACAAGGCGGCTGGAAGTTCCACTAGGAGGAAAAGA
ATGGCGTAGAGATCTTCGTTTGCCCTTGTGTAAGAGTCGAAGGCCGCTGT
GTCTGCGGGATCTGGCTTCCTTTGTTTCTTCAGCAGTGGCAGGATGTCCT
TCCTGGTCACACCTAACACCACGCAGAATTTCTTCATCCATGTCTTGAAC
TCAGCTGGGTCCTTTCCGTCGAATTTCTTGAGGCCTTTGATCACGGTTGC
CAGGTTCGTAGAACTATCGCTGGCGAACGCGCTTCCACCTCCTGTGTTGC
TCGTTGCAGTATCCATTGCTCGTTCCAGCTTTATTTTCTTCGTCTTGATA
AAAGTACTTCCTGCTGTAGGAGTAAGTTTGCTCGTGGTACTACTGCCTGT
A

Coding sequence (CDS) from alignment at Scaffold_49:223479..225279+

>EsuBft998_7a-0001 ID=EsuBft998_7a-0001|Name=EsuBft998_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_49:223479..225279+ (Ectocarpus subulatus male Bft15b)
ATGTCCAGGCTCCGAGCATTGAGATGTCCAAGCCTCCTGTGCCAGGTGTC
CGCGCTCACTAGCGTAAAGCAGACGGCGTTCGCCGTGTGGGTCTGTGACT
GCTTCTGGTGGGGCACGAGGGATTTCGTGCCAGATGGCTGGACGTTCTGC
TCGAACGTGATGTCGAGGGTGCACATGCCTTGGTCTCGCGGATCTTGTGT
GAGTGGAATCACCTTGCCTTGGATAGTGAGGTGCGGAGTGCTCTCTTCGA
CGACGCAGCGCAACCCCTTTTTCAGGAGGGAGGTGGGCAAAAAAATGTTG
CGACAGAGTCCCGGAACGTTGAGTCCCTGA