EsuBft998_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft998_6a-0001
Unique Name	EsuBft998_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_49	contig	Scaffold_49:221548..223477 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4538.ORGLA02G0045100.1
ProteomeId	EsuBft998_6
Protein domains	Coil
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1930
Evalue	1.26e-31
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M2IR@4447\|Liliopsida,3IKX9@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft998_6a	EsuBft998_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_49 221548..223477 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_6a-0001-exon	EsuBft998_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_49 221548..223477 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_6a-0001-exon	agat-three_prime_utr-23913	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_49 221548..221663 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_6a-0001-cds	EsuBft998_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_49 221664..223331 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_6a-0001-exon	agat-five_prime_utr-15597	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_49 223332..223477 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft998_6a-0001	EsuBft998_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_49 221664..223331 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_49:221548..223477-
coding sequence from alignment at Scaffold_49:221548..223477-

spliced messenger RNA

>EsuBft998_6a-0001 ID=EsuBft998_6a-0001|Name=EsuBft998_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1930bp|location=Sequence derived from alignment at Scaffold_49:221548..223477- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCCACCCGAAGCTATCGACTCGCGAACTATCACGGCCTGGACAGCTT
GTGGTCATCGACAACTTGGGGCCTGTTAATCCACCTGCGAAATATTAAGG
AGGCTCCTTCCCGTACGCGTGCAAGATCACCGACGACCACACGAACATGA
AAGAAATGTACCTGCTTCGCAAGAAATCTGACACGACCGAAGCGGTGCAC
ACGTACAACACGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACCAT
CCGCTGCGNTAAAGGAGGCTCCTTCCCGTACGCGTGCAAGATCACCGACG
ACTACACGAAGATGAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACG
ACCGAGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTA
CCGGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATCCG
AATTTCGGGACTACTGCAAGAATTCAGCTATCAAGCTCAAATACGTCGCC
ACCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCT
GNAATTTCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAGTACGCCG
CCACCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACC
CTGGCCGGAGTCACCCGGTGTCTTCTGAAGGATGGAGATTTTCCGCCGTC
CATGTGGGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCC
CACACTCAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAATAAA
TCACCTGATCTCTCGGAACTTCGGATCATTGGAGCGCGCGCCTTCGTACA
CCACGAGAGATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGC
TATGTGGTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCC
AACGGGGCCGTGGTCGAGAGCCGGAATGTGACTTTCATCGAATCTCCACC
CCGCTCAGTGCCCTTCCAGTATTTCACTGAAGCAAACGGGTACGAGAGCG
ACGTGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAGCGAC
CTGGACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAATTCCGGAAGAT
GCAGCAAGACTATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGACGGAC
ACGAAAACGAACATGGAAACGAGCAAGATCTCGACGACGGGGACGCTCCA
TCACCACATGTCCCATCGACGCCAGCTGGATCGTCATCCGAGACCCACGC
ATCTAGCCCCAGTCCATCATCGTCGAACCCGACTGAACCGGACACTTCTG
CATCAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCAGC
ACGCGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTTCC
TGCCAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTACAA
CGGGCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGATA
GCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTCCGCCGA
CGTTGCGGAAGACCCCTTGACGGTGCCGCGTGCTCACGCCTACGTCACGA
CCACTTACGAACACCACGGGATCTTGGAGGAGACGAATCAAACGATCAAA
ATCGCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAATG
GAAAGGAGCGTGCAGCAAGGAAATGGACAACCTGCGGAAACACAACGTCT
ACAATCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

protein sequence of EsuBft998_6a-0001

>EsuBft998_6 ID=EsuBft998_6|Name=EsuBft998_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=556bp
MKEMYLLRKKSDTTEAVHTYNTCVAAAGGYRIETIRCXKGGSFPYACKIT
DDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTG
SEFRDYCKNSAIKLKYVATNTPQQIGVSERDGQTLXFRDYCKNSAIKLEY
AATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNR
SPHSALGGATPYSKLHNKSPDLSELRIIGARAFVHHERYRKKLDDRAFEG
KLCGFGLDSQTYRVLNPSNGAVVESRNVTFIESPPRSVPFQYFTEANGYE
SDVLSFTSLLDSPHSTSDLDFTAQNELLRQEFRKMQQDYLAREKLRLELD
GHENEHGNEQDLDDGDAPSPHVPSTPAGSSSETHASSPSPSSSNPTEPDT
SASTGSSGMRRLQVTRASTRGKPTSDDHIDVNLVPANLEVTMNDRGRAHA
TTGRVEPSGLSFTQLAEIADQAQLPCPGDTEDSADVAEDPLTVPRAHAYV
TTTYEHHGILEETNQTIKIANTYDEAMSSPQREEWKGACSKEMDNLRKHN
VYNLXX

mRNA from alignment at Scaffold_49:221548..223477-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft998_6a-0001 ID=EsuBft998_6a-0001|Name=EsuBft998_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1930bp|location=Sequence derived from alignment at Scaffold_49:221548..223477- (Ectocarpus subulatus male Bft15b)
CCCCCCACCCGAAGCTATCGACTCGCGAACTATCACGGCCTGGACAGCTT
GTGGTCATCGACAACTTGGGGCCTGTTAATCCACCTGCGAAATATTAAGG
AGGCTCCTTCCCGTACGCGTGCAAGATCACCGACGACCACACGAACATGA
AAGAAATGTACCTGCTTCGCAAGAAATCTGACACGACCGAAGCGGTGCAC
ACGTACAACACGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGACCAT
CCGCTGCGNTAAAGGAGGCTCCTTCCCGTACGCGTGCAAGATCACCGACG
ACTACACGAAGATGAAAGAAGTTTACCTGCTTCGCAAGAAATCTGACACG
ACCGAGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAGGCTA
CCGGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGATCCG
AATTTCGGGACTACTGCAAGAATTCAGCTATCAAGCTCAAATACGTCGCC
ACCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACCCT
GNAATTTCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAGTACGCCG
CCACCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAACC
CTGGCCGGAGTCACCCGGTGTCTTCTGAAGGATGGAGATTTTCCGCCGTC
CATGTGGGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGGTCCC
CACACTCAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAATAAA
TCACCTGATCTCTCGGAACTTCGGATCATTGGAGCGCGCGCCTTCGTACA
CCACGAGAGATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGCAAGC
TATGTGGTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCCATCC
AACGGGGCCGTGGTCGAGAGCCGGAATGTGACTTTCATCGAATCTCCACC
CCGCTCAGTGCCCTTCCAGTATTTCACTGAAGCAAACGGGTACGAGAGCG
ACGTGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAGCGAC
CTGGACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAATTCCGGAAGAT
GCAGCAAGACTATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGACGGAC
ACGAAAACGAACATGGAAACGAGCAAGATCTCGACGACGGGGACGCTCCA
TCACCACATGTCCCATCGACGCCAGCTGGATCGTCATCCGAGACCCACGC
ATCTAGCCCCAGTCCATCATCGTCGAACCCGACTGAACCGGACACTTCTG
CATCAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGCCAGC
ACGCGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGGTTCC
TGCCAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCTACAA
CGGGCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGAGATA
GCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTCCGCCGA
CGTTGCGGAAGACCCCTTGACGGTGCCGCGTGCTCACGCCTACGTCACGA
CCACTTACGAACACCACGGGATCTTGGAGGAGACGAATCAAACGATCAAA
ATCGCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAGAATG
GAAAGGAGCGTGCAGCAAGGAAATGGACAACCTGCGGAAACACAACGTCT
ACAATCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_49:221548..223477-

>EsuBft998_6a-0001 ID=EsuBft998_6a-0001|Name=EsuBft998_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1668bp|location=Sequence derived from alignment at Scaffold_49:221548..223477- (Ectocarpus subulatus male Bft15b)
ATGAAAGAAATGTACCTGCTTCGCAAGAAATCTGACACGACCGAAGCGGT
GCACACGTACAACACGTGCGTCGCAGCGGCAGGAGGCTACCGGATCGAGA
CCATCCGCTGCGNTAAAGGAGGCTCCTTCCCGTACGCGTGCAAGATCACC
GACGACTACACGAAGATGAAAGAAGTTTACCTGCTTCGCAAGAAATCTGA
CACGACCGAGGCGGTGCACACGTACAACATGTGCGTCGCAGCGGCAGGAG
GCTACCGGATCGAGACCATCCGCTGCGACAAGGGAGGCGAGAACACCGGA
TCCGAATTTCGGGACTACTGCAAGAATTCAGCTATCAAGCTCAAATACGT
CGCCACCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACAAA
CCCTGNAATTTCGGGACTACTGCAAGAATTCAGCTATCAAGCTCGAGTAC
GCCGCCACCAACACCCCTCAACAAATTGGTGTATCGGAACGGGACGGACA
AACCCTGGCCGGAGTCACCCGGTGTCTTCTGAAGGATGGAGATTTTCCGC
CGTCCATGTGGGGGGAGTTAATGCTGACTGCAGCATACCTGTTGAACAGG
TCCCCACACTCAGCACTGGGAGGAGCTACGCCATACTCGAAGTTGCACAA
TAAATCACCTGATCTCTCGGAACTTCGGATCATTGGAGCGCGCGCCTTCG
TACACCACGAGAGATACCGAAAGAAGCTGGACGACAGAGCTTTCGAAGGC
AAGCTATGTGGTTTCGGCCTCGACAGCCAGACCTACCGGGTATTGAATCC
ATCCAACGGGGCCGTGGTCGAGAGCCGGAATGTGACTTTCATCGAATCTC
CACCCCGCTCAGTGCCCTTCCAGTATTTCACTGAAGCAAACGGGTACGAG
AGCGACGTGCTGAGCTTCACCTCCCTGCTGGACAGCCCCCACTCGACGAG
CGACCTGGACTTCACGGCGCAGAACGAACTCCTTCGGCAAGAATTCCGGA
AGATGCAGCAAGACTATCTCGCTCGGGAGAAGCTTCGCCTAGAACTGGAC
GGACACGAAAACGAACATGGAAACGAGCAAGATCTCGACGACGGGGACGC
TCCATCACCACATGTCCCATCGACGCCAGCTGGATCGTCATCCGAGACCC
ACGCATCTAGCCCCAGTCCATCATCGTCGAACCCGACTGAACCGGACACT
TCTGCATCAACTGGATCCTCCGGCATGCGGCGCCTGCAAGTCACCAGAGC
CAGCACGCGCGGGAAGCCCACCAGCGACGATCATATCGACGTCAACTTGG
TTCCTGCCAATCTGGAAGTCACCATGAACGACCGCGGTCGAGCCCATGCT
ACAACGGGCCGCGTGGAGCCATCCGGTCTTTCCTTCACTCAGCTGGCTGA
GATAGCCGATCAAGCCCAGCTCCCATGCCCTGGCGATACTGAGGATTCCG
CCGACGTTGCGGAAGACCCCTTGACGGTGCCGCGTGCTCACGCCTACGTC
ACGACCACTTACGAACACCACGGGATCTTGGAGGAGACGAATCAAACGAT
CAAAATCGCCAACACCTACGACGAAGCCATGAGCTCTCCCCAGCGCGAAG
AATGGAAAGGAGCGTGCAGCAAGGAAATGGACAACCTGCGGAAACACAAC
GTCTACAATCTGGNNNNN