EsuBft995_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft995_4a-0001
Unique NameEsuBft995_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:120392..124000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft995_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsIPR001763
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length151
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-22_003290.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft995_4aEsuBft995_4aEctocarpus subulatus male Bft15bgeneScaffold_444 120392..124000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_4a-0001EsuBft995_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 121154..123887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_4a-0001-exonagat-exon-15822Ectocarpus subulatus male Bft15bexonScaffold_444 120392..121315 -
EsuBft995_4a-0001-exonEsuBft995_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 122158..122314 -
EsuBft995_4a-0001-exonagat-exon-15823Ectocarpus subulatus male Bft15bexonScaffold_444 123078..123242 -
EsuBft995_4a-0001-exonagat-exon-15821Ectocarpus subulatus male Bft15bexonScaffold_444 123730..124000 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_4a-0001-exonagat-three_prime_utr-23883Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 120392..121153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_4a-0001-cdsEsuBft995_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 121154..121315 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_4a-0001-exonagat-five_prime_utr-15576Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 123888..124000 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft995_4a-0001 ID=EsuBft995_4a-0001|Name=EsuBft995_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1517bp|location=Sequence derived from alignment at Scaffold_444:120392..124000- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAGCGCACAAGCAACAAGTCAACGTGGAGTCCACGCAAAAACACGGCGCG
TTGGTCCAGGTTGCGTTGTGAAAGGTCATCCTAGCTTGACCCTTGGTGTG
TGTACAAGCCGCCATGCGGGTGCTGGGTGTCGTTCTGTTTGGCTCTGCAA
CGCAGGCCTTTTTGACAGTCCCGCCGCACACAAGTCCGCCGTCAACTGCA
TGTGCCAGCAACCCCCAACTACATGTACCATTTGCTCGACACCTTCAATT
ACTATGGCCAAGAGCTTCCAGCACTGTTGTGCGAATGCTCGGAGGGGAAG
AAGGAAGTGAAGAGGAGAAAGGTTACACAGACGTTACGGTTCGAGAGGCG
GTGGAGTGGACCATGAGCAAGGACTCAGAGTTCAGCTACATCGACATCCG
ATCGGCAGAAGAGCATGAAAAGCTGGCAACAGTAAGGGGGGCGTTGTGCA
TCCCAGCGTTCGAATTAGTCATGCCCGAGGCAGAGGAGAAAGGAGAGGGG
CTTGACGACCAAGACAGCGATGACACCGGGTATGCTCCAGATTATAACTT
CGAGGAACTGGACTACACGGTCAAGCCAGACTTCGTGGACACGATGAAAG
CTCGATTCGACCTGGACGCGAAGCTCTTGATAGGGTGCAAGACCTACAGA
TCGGCAAAGGCTTGCGAGCTTCTGGTCGCAGCAGGATTCACCGAGATCTA
CAACGTAGAGAGCCAGATTTTCATGAGAACGCGAGCACCTGAAGTGTGGT
CATAGGGTGTAGAGCGACGAAATCAGAGGAGATTCATGGGGTACTGTACG
GACATCGAAGCCAGAATTAGAACCACGTGGGTCGAGCTTTCGTGGGTTGA
TGGTAGAAGAGTAGAATCAGGTTTCGTTCGTTTGTGTGTGCTTCGACAAT
GGAAGCTTCGTAGGGAACTGCTGTAGTTGGTGAGAACATCGAATGAAGCC
ACAACCAGAACCACAAGTAGGTGGTAGAGTGAAACCAGGGTTTTCGTGCG
TTGCGAAAATCCAAGCTACCTGGAACAACCATGTCTCAGACACGCGAGCG
AGAATAAAGCGTCTTCGGTGGAGCTGTCAGCCGTTTCAGGCATACGCGAC
GTGGGTATTTGGTTTCATCTGCTGTGGTTTCGTCTTTTCCGTAACCCACA
CACGCTCATGTCTTCCCGGAAAAGAAATCGGCTCTCTCGCCCTTACTGGA
CGAGTGCCGGCATATGCGCTGGGTAACGCGTATAGTTGCGACAAGGTAAA
TAGAAATTTCGCGTTCAAGCTTTACAGGTGTTCTTGGTGGCCCGTGCAAG
GCATGCTCAGCAGTAATAGTTGCAGACCCGACGGTGAATATTCGTGCGTT
GGATCTAGTGGTCACGTACGTGTTTTTCCACCCCGATAGAGCAGTATATG
TTGGGCACACTGATGCACCGTTTGTCACGCGGAAATGCCAGAACAATGTT
TCGATCGTGCAACTAACAATCTCCGTCATGCCAAGTTCAGGTACATTGGT
CGCCCCGGTGGTCTAGT
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protein sequence of EsuBft995_4a-0001

>EsuBft995_4 ID=EsuBft995_4|Name=EsuBft995_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=213bp
MRVLGVVLFGSATQAFLTVPPHTSPPSTACASNPQLHVPFARHLQLLWPR
ASSTVVRMLGGEEGSEEEKGYTDVTVREAVEWTMSKDSEFSYIDIRSAEE
HEKLATVRGALCIPAFELVMPEAEEKGEGLDDQDSDDTGYAPDYNFEELD
YTVKPDFVDTMKARFDLDAKLLIGCKTYRSAKACELLVAAGFTEIYNVES
QIFMRTRAPEVWS
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mRNA from alignment at Scaffold_444:120392..124000-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft995_4a-0001 ID=EsuBft995_4a-0001|Name=EsuBft995_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3609bp|location=Sequence derived from alignment at Scaffold_444:120392..124000- (Ectocarpus subulatus male Bft15b)
AAGCGCACAAGCAACAAGTCAACGTGGAGTCCACGCAAAAACACGGCGCG
TTGGTCCAGGTTGCGTTGTGAAAGGTCATCCTAGCTTGACCCTTGGTGTG
TGTACAAGCCGCCATGCGGGTGCTGGGTGTCGTTCTGTTTGGCTCTGCAA
CGCAGGCCTTTTTGACAGTCCCGCCGCACACAAGTCCGCCGTCAACTGCA
TGTGCCAGCAACCCCCAACTACATGTACCATTTGCTCGACACCTTCAATT
ACTATGGCCAAGAGCTTCCAGGTGAGTGCAGTGTGTGTCTGTGTCTTGAG
GAGACGTTGTTGATGTGCTAAAGTCCTCTACGAGTGCTTGTGGACTACGC
ATGGTTACACACATGAACCCAGTTGTGACACATGCTTTGGCCATGCCCGG
AGAGGTGTGGGGCTTACTCCTGTGGGTATGCGTATGGCAGCACACTCCCA
GGCGCGCTAACTGCCATAAGACACTGGCTGTCACTCGTGGTGCCGTGCTT
TGCGCTTGTTGGCGATGGTAACACTGCCGATTCTAATCTGCGATCGCTCT
TTGCGCTTGCTGGCGATGGTATGTGTACAAGAAAGGTGTTGCACGTACTA
CAGCGGACACTCCACAACATTTCTCCCCTGTGAACAACTCATCGTTGCAC
TACATACACTATTTAATCTCCGCACTTATCCCTGCGCGTAGTCTAATGAC
ATGATATCCTCCTTTCGGTGCTGGCATCGATCGGTTCTCCTGCGACTGCC
TGCTGCAGCACTGTTGTGCGAATGCTCGGAGGGGAAGAAGGAAGTGAAGA
GGAGAAAGGTTACACAGACGTTACGGTTCGAGAGGCGGTGGAGTGGACCA
TGAGCAAGGACTCAGAGTTCAGCTACATCGACATCCGATCGGCAGAAGAG
CATGAAAAGCTGGCAACAGTAAGGTGCACCAACAGAACATGAAATTATGA
TGAACGAGAATGGTTTTGGTGGCAAAATTGCATCTACAAATGCCCAACCA
TGGGAGGTGTTTCAGAGAATAATTGTAAAAAGCGGAGCCCCCCCGACCAT
TGTCTTGCCCACGGTACAGCGTTGGGTTCGTTCCACAAGATGCAAGGCTG
CTATGTTGAGGCTTCTCGCTTCCCCTGCTCCCAAACCCATGTTATTGCAA
GAGTAGCAGGGCAGCGTTCACAATCCGACTACGCTGTACTCCCGGAAAGG
CAATGGCGGCATTCCCTTTCATTTGTCGTGGTTGTTGTGACCACAACCTT
CACGTTGGAGTGCGGTTCGAAGAGCAAGACTACTCTGATGACCGCTTGAC
ATATACTTGTATAGTGAAGCCGTTGCCAAGTCCGTTCAGCATCAATCAAC
CTGTCGTACAGCTAACGCGCGCGTGTACTGCAAGAAGCGTCGACTTGGGA
TCGAGGCTCAGTTAATTTTTCGTCGCCGCCGCCAAGTGTAGGTCGTTACA
TTAAGTTTAGCGTAGGATCCACAACTGAGGTGCGTTCCTCAGTCGATTTA
TTTTTTTTGTCGCCGAAATCTAAGCCTTTTGTTTCTTAAAGATTCGTTTC
TTAATCGCGGGCGTTGACTGTACAGCAGCAGTAGCTTTGGATGCGTCTGT
CTCTCGCACGCCCACCCTCCATGCGCACCCACTACCGTCACTGTAGACAA
ACGAAAATAATGTTGCCGTGCGCGCACGCTGTTTAGGGGGGCGTTGTGCA
TCCCAGCGTTCGAATTAGTCATGCCCGAGGCAGAGGAGAAAGGAGAGGGG
CTTGACGACCAAGACAGCGATGACACCGGGTATGCTCCAGATTATAACTT
CGAGGAACTGGACTACACGGTCAAGCCAGACTTCGTGGACACGGTGAGAG
GAAGGTCGCTTTCCAGCAAGGCTAAGGCTGTGGCGGTCGGGGTCGTCGTA
GACGCCGCTGGCTCGTTCCCTTGTTCGGAGAAAGGTAAACGTGTTGTATC
GAGACCTCATCATGTAGTGTTTTCATCAGCAGCGAGGATATTGAACTTGG
TTTTAGTACCGTAGGGGATTCCGGTGGGGGTTAGGGTTACGAAGCCCCCT
CCTATTTCAAAGATTAATAATAATATCCTTGCGAAAGCAATCCCTCTCCG
TTGAATGAGCCGAAATAAATGTTAATATTGGGCGTAAGTGACAGGAAAGA
GCGCCTGCGCAGATGGCCTCGGCGATGAGGAAATGAACGGGTGTGCCCCT
CGAGTTCTCACCGCCAAGGACTGCTGCATCCGGCACCAGTCGCCTGCCCC
CACGCCGCAGCATCACGCTCCCCGACTGTTGCCTCGTTACGTTGTTGTGT
ATACGTAATACCATCACCAACATCCCTGCTGTTGCTGTTTGTTGCCCTGC
TGCTCAGCTACCAAATTGAAGCTGGTGACAATGTGGGTTGATGATCTTGG
TGGATGCGCGCGATCACGCGATATTCCTTGGCTACGGAGAATTCGGGCCC
GCAGAGATAAAACGTCAGAATGGGGTCAAGGCTCAGTTTCTTATTTCATC
GCCACTGCTGTCGAGCACAGGTTGTAATGTACCAGAGTTGAGAGTAGGAT
CCACCGCTGAACCACGTCTTGTACCTTTTTTTTTTTTTGCGCGCGCGAAA
ACGTGAGCTTGAGTTTCTGAACAAATAATTTCTCAACCGCGGGTCCATAC
TGCATCCGTACTTGCCACGCGACCGCGCCCGACAGATGAAAGCTCGATTC
GACCTGGACGCGAAGCTCTTGATAGGGTGCAAGACCTACAGATCGGCAAA
GGCTTGCGAGCTTCTGGTCGCAGCAGGATTCACCGAGATCTACAACGTAG
AGAGCCAGATTTTCATGAGAACGCGAGCACCTGAAGTGTGGTCATAGGGT
GTAGAGCGACGAAATCAGAGGAGATTCATGGGGTACTGTACGGACATCGA
AGCCAGAATTAGAACCACGTGGGTCGAGCTTTCGTGGGTTGATGGTAGAA
GAGTAGAATCAGGTTTCGTTCGTTTGTGTGTGCTTCGACAATGGAAGCTT
CGTAGGGAACTGCTGTAGTTGGTGAGAACATCGAATGAAGCCACAACCAG
AACCACAAGTAGGTGGTAGAGTGAAACCAGGGTTTTCGTGCGTTGCGAAA
ATCCAAGCTACCTGGAACAACCATGTCTCAGACACGCGAGCGAGAATAAA
GCGTCTTCGGTGGAGCTGTCAGCCGTTTCAGGCATACGCGACGTGGGTAT
TTGGTTTCATCTGCTGTGGTTTCGTCTTTTCCGTAACCCACACACGCTCA
TGTCTTCCCGGAAAAGAAATCGGCTCTCTCGCCCTTACTGGACGAGTGCC
GGCATATGCGCTGGGTAACGCGTATAGTTGCGACAAGGTAAATAGAAATT
TCGCGTTCAAGCTTTACAGGTGTTCTTGGTGGCCCGTGCAAGGCATGCTC
AGCAGTAATAGTTGCAGACCCGACGGTGAATATTCGTGCGTTGGATCTAG
TGGTCACGTACGTGTTTTTCCACCCCGATAGAGCAGTATATGTTGGGCAC
ACTGATGCACCGTTTGTCACGCGGAAATGCCAGAACAATGTTTCGATCGT
GCAACTAACAATCTCCGTCATGCCAAGTTCAGGTACATTGGTCGCCCCGG
TGGTCTAGT
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Coding sequence (CDS) from alignment at Scaffold_444:120392..124000-

>EsuBft995_4a-0001 ID=EsuBft995_4a-0001|Name=EsuBft995_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=642bp|location=Sequence derived from alignment at Scaffold_444:120392..124000- (Ectocarpus subulatus male Bft15b)
ATGCGGGTGCTGGGTGTCGTTCTGTTTGGCTCTGCAACGCAGGCCTTTTT
GACAGTCCCGCCGCACACAAGTCCGCCGTCAACTGCATGTGCCAGCAACC
CCCAACTACATGTACCATTTGCTCGACACCTTCAATTACTATGGCCAAGA
GCTTCCAGCACTGTTGTGCGAATGCTCGGAGGGGAAGAAGGAAGTGAAGA
GGAGAAAGGTTACACAGACGTTACGGTTCGAGAGGCGGTGGAGTGGACCA
TGAGCAAGGACTCAGAGTTCAGCTACATCGACATCCGATCGGCAGAAGAG
CATGAAAAGCTGGCAACAGTAAGGGGGGCGTTGTGCATCCCAGCGTTCGA
ATTAGTCATGCCCGAGGCAGAGGAGAAAGGAGAGGGGCTTGACGACCAAG
ACAGCGATGACACCGGGTATGCTCCAGATTATAACTTCGAGGAACTGGAC
TACACGGTCAAGCCAGACTTCGTGGACACGATGAAAGCTCGATTCGACCT
GGACGCGAAGCTCTTGATAGGGTGCAAGACCTACAGATCGGCAAAGGCTT
GCGAGCTTCTGGTCGCAGCAGGATTCACCGAGATCTACAACGTAGAGAGC
CAGATTTTCATGAGAACGCGAGCACCTGAAGTGTGGTCATAG
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