EsuBft995_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft995_2a-0001
Unique NameEsuBft995_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:132185..134823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft995_2
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length46
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft995_2aEsuBft995_2aEctocarpus subulatus male Bft15bgeneScaffold_444 132185..134823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_2a-0001EsuBft995_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 134563..134823 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_2a-0001-exonagat-exon-15820Ectocarpus subulatus male Bft15bexonScaffold_444 132185..132508 -
EsuBft995_2a-0001-exonEsuBft995_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 134523..134607 -
EsuBft995_2a-0001-exonagat-exon-15819Ectocarpus subulatus male Bft15bexonScaffold_444 134770..134823 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_2a-0001-exonagat-three_prime_utr-23881Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 132185..132508 -
EsuBft995_2a-0001-exonagat-three_prime_utr-23882Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 134523..134562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_2a-0001-cdsEsuBft995_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 134563..134607 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft995_2a-0001 ID=EsuBft995_2a-0001|Name=EsuBft995_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=463bp|location=Sequence derived from alignment at Scaffold_444:132185..134823- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCAGTGTGGTCTGCTGCGTTGCGCGTGCTTTGCGGCCTGTCGGC
GGTGGCGGCTTGCGGCGCAACAGACCTCCACACCCAGCACCGGCTCTAGA
GGGCGAACCAGAGGCTAAACTGCCCAGACAACACGAAAGGTATTTAATGC
ATGGGATAACGGCCGGCACAGGTCGTGCTGACAGATGACCCGTCGGAGAG
GTAGGCGGAGCAGTCGGGCTGGTGGAGCTAACAACCCCAAAGGTCAACCG
GCTACGCCACCGGCTACGCCTCGGAACCAGCCTGGCAGCTCTGTTACACC
CGGAAGCGGGGGTATGCAGCCAACATGGGACCTTCGTCAGCATACGGAAG
GCACGCTAACCCCGCGTACTCCAGTGGTCGACAGCTCAGGGGGAGACGAA
ACAAGTGAACGTCCACGAATCGGGAGCAGGAGAGAGGGCAACCTATCCAC
TGAGGTGCGTACC
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protein sequence of EsuBft995_2a-0001

>EsuBft995_2 ID=EsuBft995_2|Name=EsuBft995_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=32bp
MSAVWSAALRVLCGLSAVAACGATDLHTQHRL
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mRNA from alignment at Scaffold_444:132185..134823-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft995_2a-0001 ID=EsuBft995_2a-0001|Name=EsuBft995_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2639bp|location=Sequence derived from alignment at Scaffold_444:132185..134823- (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGTGTGGTCTGCTGCGTTGCGCGTGCTTTGCGGCCTGTCGGC
GGTGGTTAGTCTAGACTATGCATGGTTATGTATGTGCTGGGCTGTGTTGT
TTCGCTGCTGTTTTGAGTTTGAAAGTGGGTTTCTGGTTGTGTGGTTCTGG
AAGCGTTTGAGTCGTGCAAGTTGTTATTTGCAAGTGCACAACCCCTGTAG
AAACCCCACTGATCAGGCGGCTTGCGGCGCAACAGACCTCCACACCCAGC
ACCGGCTCTAGAGGGCGAACCAGAGGCTAAACTGCCCAGACAACACGAAA
GGTATGTTAACACGATGAAAGGGCACAGCAGGGTATCTTTAATACGCCCA
GATACACATGATGTACCCGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCT
GCCGTATTCTATACTCCTTTATGTATGTCCTTTTTACTGCCTTCGGCCTC
TGTGCTGTGTTTCTTTTTTTCATGACCTCCCTGCCTACTCTGCTGTGTTG
GGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTTTTTGTACGTCTGGCTG
TCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGCTCCGTTACTCCCATGCC
CTGGTGCGCAGTGCCTGGTGCTGGTACGTTACCCTTTGAGTTTTTCTTTC
GGCGGGTATGGGAAGCGTCCCCCTTTATTTTTCTGTTATTTTTGTTTTTG
TTATTTTTCTTAATATAACACAACGAGTCCATCTCTATCACAGAAAAGAG
TCAGAGACAGATTAACAATGGAATCATAGCGTCAGAGAAAACTACCTGTG
TGTCTACGATTTCCCAGACAGCATATAGGGACATCTCCCCTGTGGGTAAC
AGGCTCAACAAATCAGTTTGGTAGCTGTCTTGTGTGTCTCATATATGTTA
TGTTGGGAAGGTGCAGACGAAAGGTGTTGGGTACTGTTGGGTAGTCGGGC
GTTTTGTGTGTCGCACCCTATTAGTTGTAGGACATGCAATCTCCATCAGT
TTACAAACATATTCTCAGTTTGGTATGCATATGTGCGGAGTATGTGCGGC
TTATGTGCCATCGCTATCATAGAAAAGAGTCAGAGACAGATTAATAATGG
AATCATAGGGTCAGAGAAAACTACCTGTATGTCTACGATTTCCTAGACAG
CATATAGGGACAACTCTCGGGTGACAGGCTCAAAATATCAGTTTGGTTGC
TGTCTTGTGTGTATCATATATTTTATGTTGTGGAATTTCATGTCGTTAAA
TGTGAGAAGGGCACGGGAGAACATTTCTCATCATTGCCTCCTGATGACGT
GGTCGCCGATAGAGGCGTGTGGTTGATGAGGTTTCATAACCGACATGTGG
GTGTGTGTTTTGTTTTGTTTTGTTTTTATCGGTGTCCGAGGGCTCTTTTC
TCGAACGGTCGGTGCAATACCTATTCATTTCTTTCTATCATTTTGTTTTC
TTTTTCCGAGTGGTTTGTACCCTATTTTTGTTTTTTTTGTTTTCTCGCGG
CGTCGTATGTGCCGGGTTCTGAGACCACGGGCTCCCCATTTTTTGTGGAC
TATAGAGCTACTGTGAGAAACAACAACAACAACAACAACAACAACAACAT
GGTAGGGTGGGAAATTGAGACTTTAGCTGGAGCATACCACACTGTGGCAG
CTCCAAAATCCGCGAGGAAGCTTCACACGCGAGCCGACCTCTGCGCAAGG
TTGGCGTCTTGCAGCCTAATTATGCTGCCAACACAGATCTAGGTCTCATT
GCCACCTAATGAAAAAGGTTTGAGGCGATTTAGTGCGGTAGAACATAAGC
ATGGTGTGTTCAAAAATCAAATTTCAGGAGAGCCCACGCCGATGGGATCG
AACGCACGCTCTTGCATGTTGCGCATGTACACCCACTGGATACACGACCC
GCATCCAAAGATACTATGGAAATGCCTGATACAGTCCGGCCGCCAAAACA
ATTTACAGGAAATATGGACTTCGAGAGGGCAAGTACGTCTGTCTTGAAGT
TAAAATTAGACTCGGTGCTTTGCCAAGGTACGAGTCAAACATGACCCGGG
GCGCTCAGCTACGTACACTCCAGACCGTGCATATACAGCAAGCAGTAGAT
TGAAACGCCGCAGAAATGTCGAATCGGGCATATATAGTACGTAGATGGAC
AGCTTTCAGTCCGTCATGCTACGCATGCCCATACAAAGGACCATATGTTA
TGCATGGCTGTCAAGAGACAACGAAGCAGGCCACAGGCATAGCATAGGTG
TGCGCCTGCGTTTGCTGTACGTGTCACGTGATATTTTGTAGTTTTTGGTC
GTATACCATGGCCAGGTATTTAATGCATGGGATAACGGCCGGCACAGGTC
GTGCTGACAGATGACCCGTCGGAGAGGTAGGCGGAGCAGTCGGGCTGGTG
GAGCTAACAACCCCAAAGGTCAACCGGCTACGCCACCGGCTACGCCTCGG
AACCAGCCTGGCAGCTCTGTTACACCCGGAAGCGGGGGTATGCAGCCAAC
ATGGGACCTTCGTCAGCATACGGAAGGCACGCTAACCCCGCGTACTCCAG
TGGTCGACAGCTCAGGGGGAGACGAAACAAGTGAACGTCCACGAATCGGG
AGCAGGAGAGAGGGCAACCTATCCACTGAGGTGCGTACC
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Coding sequence (CDS) from alignment at Scaffold_444:132185..134823-

>EsuBft995_2a-0001 ID=EsuBft995_2a-0001|Name=EsuBft995_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=99bp|location=Sequence derived from alignment at Scaffold_444:132185..134823- (Ectocarpus subulatus male Bft15b)
ATGTCTGCAGTGTGGTCTGCTGCGTTGCGCGTGCTTTGCGGCCTGTCGGC
GGTGGCGGCTTGCGGCGCAACAGACCTCCACACCCAGCACCGGCTCTAG
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