EsuBft995_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft995_12a-0001
Unique NameEsuBft995_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_444contigScaffold_444:66561..67902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G019
ProteomeIdEsuBft995_12
Ownerapollo_admin@sb-roscoff.fr
Noteimportin-11 os:homo sapiens gn:ipo11 pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length462
Hectar predicted targeting categorysignal peptide
Evalue1.29e-83
EggNOG OGsCOG5657@1|root,KOG1993@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRan GTPase binding
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft995_12aEsuBft995_12aEctocarpus subulatus male Bft15bgeneScaffold_444 66561..67902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_12a-0001EsuBft995_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_444 66582..67893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_12a-0001-exonagat-exon-15863Ectocarpus subulatus male Bft15bexonScaffold_444 66561..66799 -
EsuBft995_12a-0001-exonagat-exon-15862Ectocarpus subulatus male Bft15bexonScaffold_444 67325..67412 -
EsuBft995_12a-0001-exonEsuBft995_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_444 67768..67902 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_12a-0001-exonagat-three_prime_utr-23879Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_444 66561..66581 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_12a-0001-cdsEsuBft995_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_444 66582..66799 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft995_12a-0001-exonagat-five_prime_utr-15574Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_444 67894..67902 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft995_12a-0001 ID=EsuBft995_12a-0001|Name=EsuBft995_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=462bp|location=Sequence derived from alignment at Scaffold_444:66561..67902- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGGGCAAATGACCGCCCTTTTCGACTCCGCCGGGTATAGCGAGGCTGG
GGTTTGGAGAAGAAGACTTTGGGCGATGGCTCTCTTGAAACTACTGCCGT
CAGCCAACAGCGGGGTCATCAAGAACCTCGATCAGATTGTTAACATCTGC
GTGGACGTGCTGACGGAAGAGAGGGAAGATGGAGGAAAGAGACTCAAGGA
GAGCCTTGCTCAACCACCCGTAGGGGAACCGGACAGCGCATCTGCCTCCG
AACCAAATCTCCTACAGTCGAGGCTCCTGGAGGCGTTACAAGCCGACGTT
GCCGTAACAACGGACTTAAAGGGTCTGGTCAGAGCGAGCATGGATGCTTT
GCGGGCGACGCTTGGGGACCAGGGTTGGCAGGTAGCGGTTGAAACGGTCG
AACCGGTGGTTTTGAGAGAACTACAGCGAATGGTGGCGTAGCCTATACCG
TATTGAAGAACC
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protein sequence of EsuBft995_12a-0001

>EsuBft995_12 ID=EsuBft995_12|Name=EsuBft995_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MTALFDSAGYSEAGVWRRRLWAMALLKLLPSANSGVIKNLDQIVNICVDV
LTEEREDGGKRLKESLAQPPVGEPDSASASEPNLLQSRLLEALQADVAVT
TDLKGLVRASMDALRATLGDQGWQVAVETVEPVVLRELQRMVA
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mRNA from alignment at Scaffold_444:66561..67902-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft995_12a-0001 ID=EsuBft995_12a-0001|Name=EsuBft995_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1342bp|location=Sequence derived from alignment at Scaffold_444:66561..67902- (Ectocarpus subulatus male Bft15b)
GTTGGGCAAATGACCGCCCTTTTCGACTCCGCCGGGTATAGCGAGGCTGG
GGTTTGGAGAAGAAGACTTTGGGCGATGGCTCTCTTGAAACTACTGCCGT
CAGCCAACAGCGGGGTCATCAAGAACCTCGATCAGGTACGCTAAACGTGC
ACCCTGTTGCTCGGTTCCTGTCGATGTCTCCTTGCCTCTTCTTCTCCAAC
CTGGCTTTTCCGCCAACGTAGGGAGAGAGTCAGAGTTTGTTTCATGGTCA
ACCACTTTTTGCACCATGAGGTTTATGAGTTTTTTTCCGAATCTCTAAAG
GGACGTACAGTGTGCGGCGGCCAGCAAATTGCCAGATCAGCTCGTTTCTT
TTGTTTCTTCCGTTTGGATTTTCGAGTCGAGTTTGTGACAAATTTAGCTC
AAGGTTCTTATAGTATGGTTTGTGTTGACGTGCTGGGGTGCTCGATGTTT
CGGTGCTTGGCGTTAACACTTGGTGCTCATGATGCCGCAGATTGTTAACA
TCTGCGTGGACGTGCTGACGGAAGAGAGGGAAGATGGAGGAAAGAGACTC
AAGGAGAGCCTTGCTCAACCACCCGTAGGTAAGACGAAAATGATTTATGA
TAATCCCCGACCTTCGTTCCTATGATATTCCAGGATTCAAAAGTAGCGGA
GGGGTATGCTGACTATGACCGGAGCCTGTGTGCTGGGTGGTGGACCCTGG
ACACAGATATGGCCGTGTTTCGCGCGTGTGCACGTTTATCCCAGCGGAGG
CTGTGCGAGTTGATCTCACTGCTCAATAGATGGTGCATGCTGGGTGCTGG
GCAATCGAGATCTGTGGATGGTCCCGACAACCAAAGAATCGCTTTCCGCT
TACCCATGGCCCCGTCCCGCCTTCCTTTTTGCTATCCACTTGTTCTTTTT
GTCCATGGTGTCCATTTTGATTTAAGTACATCTTGTTTTGGGTAAGTTAG
TCTGTGACAACGGGAATCGCCCGCGTCAAGTGTTAGACTAAAACGGACAG
ATGAAGGTACTGGGTAGACAGATCGGAACGGTTTTTATTGTGAACACAAC
AACATGAACAACACCAACAACAGTGTATTCATATATCGTGTGTCGTTGCT
CAGGGGAACCGGACAGCGCATCTGCCTCCGAACCAAATCTCCTACAGTCG
AGGCTCCTGGAGGCGTTACAAGCCGACGTTGCCGTAACAACGGACTTAAA
GGGTCTGGTCAGAGCGAGCATGGATGCTTTGCGGGCGACGCTTGGGGACC
AGGGTTGGCAGGTAGCGGTTGAAACGGTCGAACCGGTGGTTTTGAGAGAA
CTACAGCGAATGGTGGCGTAGCCTATACCGTATTGAAGAACC
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Coding sequence (CDS) from alignment at Scaffold_444:66561..67902-

>EsuBft995_12a-0001 ID=EsuBft995_12a-0001|Name=EsuBft995_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_444:66561..67902- (Ectocarpus subulatus male Bft15b)
ATGACCGCCCTTTTCGACTCCGCCGGGTATAGCGAGGCTGGGGTTTGGAG
AAGAAGACTTTGGGCGATGGCTCTCTTGAAACTACTGCCGTCAGCCAACA
GCGGGGTCATCAAGAACCTCGATCAGATTGTTAACATCTGCGTGGACGTG
CTGACGGAAGAGAGGGAAGATGGAGGAAAGAGACTCAAGGAGAGCCTTGC
TCAACCACCCGTAGGGGAACCGGACAGCGCATCTGCCTCCGAACCAAATC
TCCTACAGTCGAGGCTCCTGGAGGCGTTACAAGCCGACGTTGCCGTAACA
ACGGACTTAAAGGGTCTGGTCAGAGCGAGCATGGATGCTTTGCGGGCGAC
GCTTGGGGACCAGGGTTGGCAGGTAGCGGTTGAAACGGTCGAACCGGTGG
TTTTGAGAGAACTACAGCGAATGGTGGCGTAG
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