EsuBft994_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft994_8a-0001
Unique NameEsuBft994_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_72contigScaffold_72:550362..552980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LH10
ProteomeIdEsuBft994_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length37
Hectar predicted targeting categoryother localisation
Evalue2.51e-29
EggNOG OGsKOG3873@1|root,KOG3873@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameSMPD2
KEGG rclassRC00017,RC00425
KEGG koko:K01117,ko:K12351,ko:K12818
KEGG ReactionR02541
KEGG Pathwayko00600,ko01100,ko03040,ko04071,map00600,map01100,map03040,map04071
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004620,GO:0004629,GO:0004767,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005783,GO:0005886,GO:0005887,GO:0005901,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009605,GO:0009612,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019637,GO:0019867,GO:0023052,GO:0030148,GO:0030149,GO:0031090,GO:0031224,GO:0031226,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032995,GO:0034248,GO:0034250,GO:0034641,GO:0035556,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045834,GO:0046466,GO:0046467,GO:0046513,GO:0046519,GO:0046521,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051716,GO:0052712,GO:0052713,GO:0052714,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0090154,GO:0097164,GO:0098573,GO:0098588,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903338,GO:1905038,GO:2000303,GO:2000304
EC3.1.4.12,3.6.4.13
Descriptioninositol phosphosphingolipid phospholipase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft994_8aEsuBft994_8aEctocarpus subulatus male Bft15bgeneScaffold_72 550362..552980 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_8a-0001-exonEsuBft994_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_72 550362..550673 -
EsuBft994_8a-0001-exonagat-exon-91451Ectocarpus subulatus male Bft15bexonScaffold_72 552917..552980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_8a-0001-cdsEsuBft994_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_72 550362..550565 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_8a-0001-exonagat-five_prime_utr-15572Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_72 550566..550673 -
EsuBft994_8a-0001-exonagat-five_prime_utr-15573Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_72 552917..552980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_8a-0001EsuBft994_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_72 550362..550565 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft994_8a-0001 ID=EsuBft994_8a-0001|Name=EsuBft994_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=376bp|location=Sequence derived from alignment at Scaffold_72:550362..552980- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGTCGACGACGGCCCTGAAACACCACGCTCTCTTCGGCGTGGACGTTCT
CTACCGATCAGCGAGTTCCCACTGACCCACGCCACGCCGACGAGAACGGA
AGCACAAAGAGACCAAGATAGAGACAGAGACAGAAAAGAGACTGAGTCGA
CCCCCCCCCGCGAGCGGCACACATGCACGACCGGAGCAACCCTTTGTTCG
AGACCACCGACACTGGTTGCCACGTAGCCGGGACGGGACTACCGAGGCTA
GAGGCGGCGGCAAGGTCGGGGGCGAGATCTCGACGAGGCTCTCTTCTCGA
CGGTTGGGGGTGGGACATGATTAGGCAGCGGCCGCGACAGCGACCCCGGG
TGGGAGACTCGAGGGGGCCTCGGTGA
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protein sequence of EsuBft994_8a-0001

>EsuBft994_8 ID=EsuBft994_8|Name=EsuBft994_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MHDRSNPLFETTDTGCHVAGTGLPRLEAAARSGARSRRGSLLDGWGWDMI
RQRPRQRPRVGDSRGPR
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mRNA from alignment at Scaffold_72:550362..552980-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft994_8a-0001 ID=EsuBft994_8a-0001|Name=EsuBft994_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2619bp|location=Sequence derived from alignment at Scaffold_72:550362..552980- (Ectocarpus subulatus male Bft15b)
CCGTCGACGACGGCCCTGAAACACCACGCTCTCTTCGGCGTGGACGTTCT
CTACCGATCAGCGAGTGAGTGCCTTGTGCCCGGTTCAAAGAAGGAACTAT
GAAACCATCTTGCAGGTTCTGTACGCCTGAAGAAGTCGGTTTATCGAACC
TGCTGTCACTCGACCTCTTCGTACAAAACGTATTTATTCGGCTTCTCGTA
GTCCAGAATTTCAAACCAGCAGACAGAGCGGGGCAACAACCGCCTTCACA
TGGTTGATGATACAGATAGTAGTTGATATCCTGGCCTGTAGCAGCAGCAG
TGGTAGACGCTTTTTTTTTGTGGGAGTGCTGACGGCCTCGGGGGAAGCTT
GTAGTACAGCGGTTGCTCGTTCATTGTGGCGTACGTTGTTCGGAGAAAGT
AATGGTTGTCTACCTAGAGCTTCGGACATATCTCGGGCCCTCGGATATGC
CGTGGTCACACCCGCGCAGGCCATCGCTGCGGTAGTTAGACGAGAGGCAC
GCGCGGCTTTAAAATGTAGTCCATCTAGCTTGTTGTTTTTCTGAAGTTTC
GTTATAGATATTCGAGGTCGGTGGTAGGCTCGGCGACGAACTCACCGATC
AACATCCAACCATTCGTTCGTCGCCTGGGGCGCGGTACGCAGTTGTGCTC
CGCCTCACGCTAAAGTTCGATGAATGTTTAACCTCTTGTTGTTATCAACG
ACGCACCGACTGCTTCAACCCTCCTATGCATACGACTGTACACACACTTG
AACCCTAAACAGGGGACACTTTGGGGACACAGCACTCAAATACCTGCTAA
CCGCACCGTGGTCGTGACTATGAATGCTCCGCAACGTGAAACGTGCGTGG
AAACCTTCAAACCTTGCTCTCGCATGCTTGGGTGCCTCTCCTGGGTTCCT
GGGCCTCTAACTTGCTGGGACACAACCTCCCAAGCCGCGGGTCCCCTTGT
CGATACAACTGCTGTACATAGCCTACAGAGTCGTACTGGAAACATGTTGA
CTTGGCTTGAGTGCGGAAATTGTCCCGACGATCCATACTGGAGCCAAGTC
AGCCTTCGATCCTCGGCACTGCTGTACACGGCCTCTCCCAATGAGCGGAC
GCGATTTTTTCTGGACCCATAACCTGTCACTAACTTGGTACCCCGGGTTT
TTATTTACTCTCTAAAACTGGGTACTTTATAGGAGGGTTAAAGTTAAATG
AACGAGGAAACTGGACGACGGCTATCAGTAAAGCGGTACCGTATGTACTT
ACTTGCGTTTGCCCCCGGCGTAGCGATAGCAGTGTAGCCACGAGACCTAA
TATTCGAAACGAGCTGGAGTTTATCCCCGACAACCCACAGGGTCCCAAAG
AAGTATGTGGGGCTCTACAATTAGAGCCAGCTCAGATGTCCCCAAAACCG
CAAGTTGTTAGCCTACAGTAATATGAAGTAGATATTTGCTGCCGCACGCA
CACAACGTATCCCCTCTTGCACGACACCGCGCAGCACGATGCATGGATGA
CCATGCTTTGGAAAAACGGGTATTGTACGCCCGTCGTAGGTGCTGGCTAC
TTTACCGTCGGTGAGCCTAACACCGAGCTGAGCCCAACACATGAATGCAG
CAGAGTGACGAAACGTTTATTCTTTCCTGGCTACGCCGACTTGCCTCGCT
CGAAGCATGTGCTGCTACTACTACCGCTGTCTCATGGCAGAATAGCGGCA
AGGGTTTTTAGTTTCCCAGGTGATAACTTCATGTCCACAGAGTCGCGGGG
AAAAAAGCTAGGAATTGGTCAACCCTTTTCTGGCGTTCAAAATTGAAGAC
AAGCATCGCGGGACTGCGGGGGGAAGGCAGAGAAAAACTCGAAAAACGAA
GTGTGAAAAAGAAGAAAAAAAAAAAAGTGTTGGCCAACCTTCCTCGTGCG
TAACCCCGGCTGGTGCTTCCAAGATATGGTACAGAAAAGCGTGGAAGAGA
TCAACGTTCGAGAGCCGCCAGCAACGTGCCCTTTGCGAAACAGACGTGTA
GGTGCTTGTGCTGGCTCCAAAGACTGACGATACTGCGCGACGTACGAAGC
CACAGTATGATGTTACAGTGTTTTGGGTGGAGTGGGCAGCGAGGTTTGAG
CAGAGAAACCTTTCTCGAACGACCGCTACAGTACAACAGCCGCAGGGCCT
GCGAACGACAGCGATAAAGCGATTTTTTCTGTCTCTCTGTCTCTCTGTCT
CTCTGTCTCTCTATCTCCGACTTTCGTATCTGTGTCTCTGTGTTTCTCTG
GCTGAATGATTCTGTTCTCCCTTCTTCGTCCCCCTTCATGCCTTGCACGA
CAAACAGGTTCCCACTGACCCACGCCACGCCGACGAGAACGGAAGCACAA
AGAGACCAAGATAGAGACAGAGACAGAAAAGAGACTGAGTCGACCCCCCC
CCGCGAGCGGCACACATGCACGACCGGAGCAACCCTTTGTTCGAGACCAC
CGACACTGGTTGCCACGTAGCCGGGACGGGACTACCGAGGCTAGAGGCGG
CGGCAAGGTCGGGGGCGAGATCTCGACGAGGCTCTCTTCTCGACGGTTGG
GGGTGGGACATGATTAGGCAGCGGCCGCGACAGCGACCCCGGGTGGGAGA
CTCGAGGGGGCCTCGGTGA
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Coding sequence (CDS) from alignment at Scaffold_72:550362..552980-

>EsuBft994_8a-0001 ID=EsuBft994_8a-0001|Name=EsuBft994_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_72:550362..552980- (Ectocarpus subulatus male Bft15b)
ATGCACGACCGGAGCAACCCTTTGTTCGAGACCACCGACACTGGTTGCCA
CGTAGCCGGGACGGGACTACCGAGGCTAGAGGCGGCGGCAAGGTCGGGGG
CGAGATCTCGACGAGGCTCTCTTCTCGACGGTTGGGGGTGGGACATGATT
AGGCAGCGGCCGCGACAGCGACCCCGGGTGGGAGACTCGAGGGGGCCTCG
GTGA
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