EsuBft994_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft994_5a-0001
Unique NameEsuBft994_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_72contigScaffold_72:576101..578546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft994_5
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length153
Hectar predicted targeting categoryother localisation
Evalue4.26e-109
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft994_5aEsuBft994_5aEctocarpus subulatus male Bft15bgeneScaffold_72 576101..578546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_5a-0001EsuBft994_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_72 576101..578521 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_5a-0001-exonEsuBft994_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_72 576101..576422 +
EsuBft994_5a-0001-exonagat-exon-91429Ectocarpus subulatus male Bft15bexonScaffold_72 576484..576810 +
EsuBft994_5a-0001-exonagat-exon-91427Ectocarpus subulatus male Bft15bexonScaffold_72 577389..577771 +
EsuBft994_5a-0001-exonagat-exon-91428Ectocarpus subulatus male Bft15bexonScaffold_72 578048..578546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_5a-0001-cdsEsuBft994_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_72 576101..576422 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft994_5a-0001-exonagat-three_prime_utr-23874Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_72 578522..578546 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft994_5a-0001 ID=EsuBft994_5a-0001|Name=EsuBft994_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1531bp|location=Sequence derived from alignment at Scaffold_72:576101..578546+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTACCGCATGCTCGGCCATGAGTGCCCCTCCCCCCCCCGACCTCC
GGAGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGG
CCCAGGAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAGCTA
GAGAAAGAGTTCACTGAGGACGACGCCGAGGCGTGTGTGAACAAGCTGCA
GTGCCACAAAGCAGCAGGGGCCAATGGGATAGTCAACGAGCTCATGAAGT
TTGGGGGAAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGGTG
TGGAAAAACGAGAATGCGCCAAGAAACTACAGGAGGATCACACCGTTTAA
CACAGGAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAG
TATCGGATAACGAACAAAGCATAAGTGAGGGCCAGGCAGGTTTCCGCAAG
AAGAGGGGGTGCGAAGACCACGCATTCAGGGTAGGAAGAATCATCCAAGG
TAGAAGGACGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAA
AGGCATACCATACCGTATGGAGAGGTGGGCTGTGGAAACAACTTTCCAAG
TACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTG
GACACTGAAACTTCGGTGTCGGGAATGCTGTTTGCGGATGATGTCGGACA
CCGCTGAGGGACTGCAACTGCATATTGACGCGGCGGAGAAGGTTACTGAT
ACGTGGAGATTATCTGCCAACGTTCAGAAGAGTGCCGTCATGTTATGCAA
CGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGG
AGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAA
GACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGC
ACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACAC
GCAGCAAATTGAAGATTTTGAAGATCGCAATCGCGAAGTGGGCAAACAAA
AAGAGGGGTAGGCAACCCACGGAATGGGTCAAGCTTGTAGAGGACGAATG
GAAGGCGTTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTAC
AGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAG
AATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAAT
GTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATG
CAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGA
GAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGATCAA
ATGTGCTTGCGGCTCCGAGTGCGATGACCGAGTTCATGTAGTCACGGAAT
GTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAA
ATATAAGGAGGTACAGGGAGATGTTTGAGGC
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protein sequence of EsuBft994_5a-0001

>EsuBft994_5 ID=EsuBft994_5|Name=EsuBft994_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=501bp
MDYRMLGHECPSPPRPPENEAFDQVFKKEVDAWAQEEEETSKADVGNVEL
EKEFTEDDAEACVNKLQCHKAAGANGIVNELMKFGGKGMIQLMVLLYNWV
WKNENAPRNYRRITPFNTGGKVFCKLLNDRIVGVSDNEQSISEGQAGFRK
KRGCEDHAFRVGRIIQGRRTAGKPTYCFFLDVKKAYHTVWRGGLWKQLSK
YGIKGKMWRVLKKMTEWTLKLRCRECCLRMMSDTAEGLQLHIDAAEKVTD
TWRLSANVQKSAVMLCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAK
DCSWNAHMSKVAEKGKARAGKLHPILANRHLDTRSKLKILKIAIAKWANK
KRGRQPTEWVKLVEDEWKAFDIDEDETLETEGLQGFKEKISVACAEREEQ
NLRKESKDKEGLEVYGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLR
ERRRRHRTVDEEDDEIKCACGSECDDRVHVVTECPLYKKEREVYVTELGK
I
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mRNA from alignment at Scaffold_72:576101..578546+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft994_5a-0001 ID=EsuBft994_5a-0001|Name=EsuBft994_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2446bp|location=Sequence derived from alignment at Scaffold_72:576101..578546+ (Ectocarpus subulatus male Bft15b)
ATGGACTACCGCATGCTCGGCCATGAGTGCCCCTCCCCCCCCCGACCTCC
GGAGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGG
CCCAGGAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAGCTA
GAGAAAGAGTTCACTGAGGACGACGCCGAGGCGTGTGTGAACAAGCTGCA
GTGCCACAAAGCAGCAGGGGCCAATGGGATAGTCAACGAGCTCATGAAGT
TTGGGGGAAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGGTG
TGGAAAAACGAGAATGCGCCAAGTAGATGCAGGGAAGGAGTGGTTGTGAA
CTTGTTTAAGAAAAGGAGGCAAGACTGACCCAGGAAACTACAGGAGGATC
ACACCGTTTAACACAGGAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAG
GATAGTGGGAGTATCGGATAACGAACAAAGCATAAGTGAGGGCCAGGCAG
GTTTCCGCAAGAAGAGGGGGTGCGAAGACCACGCATTCAGGGTAGGAAGA
ATCATCCAAGGTAGAAGGACGGCGGGAAAGCCGACGTACTGCTTCTTCCT
GGACGTGAAAAAGGCATACCATACCGTATGGAGAGGTGGGCTGTGGAAAC
AACTTTCCAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAG
ATGACAGAGTGTACGGAAAGCGCGGTCATGTTAGACAGAAAAATTCTTCT
ACATTGACCAGGGGGCCCCAAAAGGTTGCACGCTGTCCCCAACATTGTTC
CAGGTGTTCATCAACGATCTGTTGAAAGTCGTAGAGGCAGTCCGGAAGGG
AGTGTGTGTGTTATGTGTGTTTTCGTCCTATTTATTATGGCGAAAGTCCC
CTCATTTTTCGTGGTGAGACGTGTACTACACTTTTCAGCGTATGGAGAGT
AATACACTTTAAAGTATTTTTTCGTACAACTACAACCATCCAGGATCACA
CGGGGGGGGGTAAACACCAGGGCTTTTTCTTCTTATTAATTTTCATGCCC
CACCTTCCTCCTGCGGTGCGGGCTGAATTTTATTTCTATCGCGAGAAGGG
TCCAGTCGTCCCTTTCCCTCGTCGGGTGCAAACATCGAAGTTTGGTACTC
ACGAGAGCTTTTAAGCTATATTTCGCTTTCACCCGCAAATTTCGTAAACT
TTTCACCCCATGGGGATTCGAACTCATGACCTCTGCGACTAGAGGATTGC
GAGGATACCACTAGACCACCGGGGGGAGTAAAAGTAAGGGACACTGAAAC
TTCGGTGTCGGGAATGCTGTTTGCGGATGATGTCGGACACCGCTGAGGGA
CTGCAACTGCATATTGACGCGGCGGAGAAGGTTACTGATACGTGGAGATT
ATCTGCCAACGTTCAGAAGAGTGCCGTCATGTTATGCAACGAGAACAAGG
AGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTA
GTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTG
GAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGA
AGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCAGCAAATTG
AAGATTTTGAAGATCGCAATCGTACCGCCACTATAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTTGCCGAGGATTGTATGGGAGGCG
AAGTGGGCAAACAAAAAGAGGGGTAGGCAACCCACGGAATGGGTCAAGCT
TGTAGAGGACGAATGGAAGGCGTTCGACATCGACGAAGATGAAACGCTGG
AAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCC
GAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCT
AGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTAC
ATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGG
GACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGA
AGACGACGAGATCAAATGTGCTTGCGGCTCCGAGTGCGATGACCGAGTTC
ATGTAGTCACGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTG
ACTGAGCTGGGAAAAATATAAGGAGGTACAGGGAGATGTTTGAGGC
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Coding sequence (CDS) from alignment at Scaffold_72:576101..578546+

>EsuBft994_5a-0001 ID=EsuBft994_5a-0001|Name=EsuBft994_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1506bp|location=Sequence derived from alignment at Scaffold_72:576101..578546+ (Ectocarpus subulatus male Bft15b)
ATGGACTACCGCATGCTCGGCCATGAGTGCCCCTCCCCCCCCCGACCTCC
GGAGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGACGCATGGG
CCCAGGAAGAAGAAGAGACATCGAAGGCAGACGTTGGGAACGTAGAGCTA
GAGAAAGAGTTCACTGAGGACGACGCCGAGGCGTGTGTGAACAAGCTGCA
GTGCCACAAAGCAGCAGGGGCCAATGGGATAGTCAACGAGCTCATGAAGT
TTGGGGGAAAGGGGATGATCCAGCTGATGGTACTGCTATACAATTGGGTG
TGGAAAAACGAGAATGCGCCAAGAAACTACAGGAGGATCACACCGTTTAA
CACAGGAGGAAAAGTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAG
TATCGGATAACGAACAAAGCATAAGTGAGGGCCAGGCAGGTTTCCGCAAG
AAGAGGGGGTGCGAAGACCACGCATTCAGGGTAGGAAGAATCATCCAAGG
TAGAAGGACGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAA
AGGCATACCATACCGTATGGAGAGGTGGGCTGTGGAAACAACTTTCCAAG
TACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTG
GACACTGAAACTTCGGTGTCGGGAATGCTGTTTGCGGATGATGTCGGACA
CCGCTGAGGGACTGCAACTGCATATTGACGCGGCGGAGAAGGTTACTGAT
ACGTGGAGATTATCTGCCAACGTTCAGAAGAGTGCCGTCATGTTATGCAA
CGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGG
AGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAA
GACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGC
ACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACAC
GCAGCAAATTGAAGATTTTGAAGATCGCAATCGCGAAGTGGGCAAACAAA
AAGAGGGGTAGGCAACCCACGGAATGGGTCAAGCTTGTAGAGGACGAATG
GAAGGCGTTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTAC
AGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAG
AATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAAT
GTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATG
CAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGA
GAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGATCAA
ATGTGCTTGCGGCTCCGAGTGCGATGACCGAGTTCATGTAGTCACGGAAT
GTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAA
ATATAA
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