EsuBft993_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft993_3a-0001
Unique Name	EsuBft993_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_589	contig	Scaffold_589:77650..79468 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3750.XP_008337255.1
ProteomeId	EsuBft993_3
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	35493\|Streptophyta
Length	1819
Hectar predicted targeting category	other localisation
Evalue	1.83e-16
EggNOG OGs	COG2801@1\|root,KOG4197@1\|root,KOG0017@2759\|Eukaryota,KOG4197@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Mitochondrial protein
COG category	O

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft993_3a	EsuBft993_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_589 77650..79468 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_3a-0001-exon	EsuBft993_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 77650..79468 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_3a-0001-exon	agat-three_prime_utr-23864	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 77650..78424 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_3a-0001-cds	EsuBft993_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_589 78425..79378 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_3a-0001-exon	agat-five_prime_utr-15566	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_589 79379..79468 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_3a-0001	EsuBft993_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_589 78425..79378 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:77650..79468-
coding sequence from alignment at Scaffold_589:77650..79468-

spliced messenger RNA

>EsuBft993_3a-0001 ID=EsuBft993_3a-0001|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_589:77650..79468- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTGCTTCCCCGTTTTCGGTAGGAAATTCCACGCCGACCATTGACAATAA
TTCGTTCCATGCCTCCACCGGCCATGTAAATGAACTTTTGATGCATGAAA
CGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCAGCCATGTGTA
GGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGCGGCATGGCAC
CCGCTCGGCGGTACCGTTCGGCAAAGTCCACATTGACCTCACGGACCCGC
TCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGGACATC
GCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCGACACCCT
GAAGTTCGTGCAGCGGTTCCTCGCCGGCATGAACTGCATGGGCACTCCAG
GGTGTTTCCGCATGGACAACGGCGACGAGTTCGCCGGCTCCGCCTTCACC
TCGTTCTGCGACGCTGCTGACATTCGGCGCGAGTACACCTCGCCCGACAC
CCCCAAGCAAAACACGGTGGTTGAGAGCGCCATATGGCGCGCCATGAAGG
GGGGCCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTC
TCCTCCATCCCCAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTC
GGCGCTGTGGGCATTCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACC
TGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGCCGGAAGCCGCCCCTC
ACCGTCGTCCCTTTTTTCCAGGAGGGGATGATGCGCGTGAAGCGGGCCAC
GAAGGCGGACGTCCAATCCGCGCGGTGCTTCTACCTGCACGGCGCCAACA
ACCACTCAACGTCTACCGCCGTCGTTCTGCGCGCTGACACCGGCTGCCTC
GCCCTCACCAACAACGTGTGGGTCAACCGCCGGGCAGGGGCGCCGGCGCC
GGTGCCGGACATCGGGGGGGTTTCTTCGGTCACCGCGGCGCCCTCGCCGG
CCACCGCCGTACCACCGCTCTCCACCACCGTCTTGGTCTGTTAGCGATGA
TGGACAAGGACTCCCTCATCTCGTCGCTCGCCACTATTTGTTCATGACGG
GTTTGCCGGCTTCTTCACGTTGCCGTCCATGTGGGCCAATCGGAGGGAGC
TCGCCTNTCTACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTCCCT
CATCTCGTCGCTCGCCACTATTTGTTCATGACGGGTTTGCCGGCTTCTTC
ACGTTGCCGTCCATGTGGGNTTCATACGATGTATCAGTATGTAAATAACG
TATAATGCGACAAGCACTGTCGCTGGGACACCCACATTCTCGACGCCAGC
ACGAGATCCTTTACTCCTGCTTGAGCGATGAACAAAGTTCAACACAAGAC
GCTCACATACATGACCGCTGTTGCTTTGCTCTTGAAACCACGGCGATGAA
GCTCGCTTTCGGATTTGCTCAGAATCGAGTCCCACCCTGCATCTCCATCA
CCTACCTCAAGGAACGTGAAGCCATTCTCGAGATATATCGGATTATGGTT
TGCCATTTCATCGCCTTCTTCTTCTGCCGTGGAAAAGGGGAGCATGTCAT
GTTTGTGCGCGGCCCGCATGCACAAGAAAACGCGCGGCAGAATGAGCCAT
CGCGAGACATGATGACCGCCGTGAACTCCTTCAGCTTACAACCGACCGTG
GTGATGCGATCTCCAGGGTTGTCTGTTGACATCCGGGCCTACCCATTCAC
CCACTCTTGTCTTGTGCCTGACGTTGTTGTGACCACACTGCGCAATGTCA
AACGCTACGTCACGATGGG

protein sequence of EsuBft993_3a-0001

>EsuBft993_3 ID=EsuBft993_3|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=317bp
MHETAKQQGVRLVREMQPCVGCVEAKGRRAPVPRHGTRSAVPFGKVHIDL
TDPLSDALDGSRYLIMFVDIASRWQRGYGMRAKSDTLKFVQRFLAGMNCM
GTPGCFRMDNGDEFAGSAFTSFCDAADIRREYTSPDTPKQNTVVESAIWR
AMKGGHAARRHILAMGHVDLSSIPNVGVNGHRLWLASALWAFACFNRSAT
KANLGWMSPFEAFFGRKPPLTVVPFFQEGMMRVKRATKADVQSARCFYLH
GANNHSTSTAVVLRADTGCLALTNNVWVNRRAGAPAPVPDIGGVSSVTAA
PSPATAVPPLSTTVLVC

mRNA from alignment at Scaffold_589:77650..79468-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft993_3a-0001 ID=EsuBft993_3a-0001|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1819bp|location=Sequence derived from alignment at Scaffold_589:77650..79468- (Ectocarpus subulatus male Bft15b)
GGTGCTTCCCCGTTTTCGGTAGGAAATTCCACGCCGACCATTGACAATAA
TTCGTTCCATGCCTCCACCGGCCATGTAAATGAACTTTTGATGCATGAAA
CGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCAGCCATGTGTA
GGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGCGGCATGGCAC
CCGCTCGGCGGTACCGTTCGGCAAAGTCCACATTGACCTCACGGACCCGC
TCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGGACATC
GCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCGACACCCT
GAAGTTCGTGCAGCGGTTCCTCGCCGGCATGAACTGCATGGGCACTCCAG
GGTGTTTCCGCATGGACAACGGCGACGAGTTCGCCGGCTCCGCCTTCACC
TCGTTCTGCGACGCTGCTGACATTCGGCGCGAGTACACCTCGCCCGACAC
CCCCAAGCAAAACACGGTGGTTGAGAGCGCCATATGGCGCGCCATGAAGG
GGGGCCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTC
TCCTCCATCCCCAACGTCGGCGTCAACGGACATCGCCTGTGGCTCGCGTC
GGCGCTGTGGGCATTCGCCTGCTTCAACCGCTCCGCGACGAAGGCCAACC
TGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGCCGGAAGCCGCCCCTC
ACCGTCGTCCCTTTTTTCCAGGAGGGGATGATGCGCGTGAAGCGGGCCAC
GAAGGCGGACGTCCAATCCGCGCGGTGCTTCTACCTGCACGGCGCCAACA
ACCACTCAACGTCTACCGCCGTCGTTCTGCGCGCTGACACCGGCTGCCTC
GCCCTCACCAACAACGTGTGGGTCAACCGCCGGGCAGGGGCGCCGGCGCC
GGTGCCGGACATCGGGGGGGTTTCTTCGGTCACCGCGGCGCCCTCGCCGG
CCACCGCCGTACCACCGCTCTCCACCACCGTCTTGGTCTGTTAGCGATGA
TGGACAAGGACTCCCTCATCTCGTCGCTCGCCACTATTTGTTCATGACGG
GTTTGCCGGCTTCTTCACGTTGCCGTCCATGTGGGCCAATCGGAGGGAGC
TCGCCTNTCTACCGTCTTGGTCTGTTAGCGATGATGGACAAGGACTCCCT
CATCTCGTCGCTCGCCACTATTTGTTCATGACGGGTTTGCCGGCTTCTTC
ACGTTGCCGTCCATGTGGGNTTCATACGATGTATCAGTATGTAAATAACG
TATAATGCGACAAGCACTGTCGCTGGGACACCCACATTCTCGACGCCAGC
ACGAGATCCTTTACTCCTGCTTGAGCGATGAACAAAGTTCAACACAAGAC
GCTCACATACATGACCGCTGTTGCTTTGCTCTTGAAACCACGGCGATGAA
GCTCGCTTTCGGATTTGCTCAGAATCGAGTCCCACCCTGCATCTCCATCA
CCTACCTCAAGGAACGTGAAGCCATTCTCGAGATATATCGGATTATGGTT
TGCCATTTCATCGCCTTCTTCTTCTGCCGTGGAAAAGGGGAGCATGTCAT
GTTTGTGCGCGGCCCGCATGCACAAGAAAACGCGCGGCAGAATGAGCCAT
CGCGAGACATGATGACCGCCGTGAACTCCTTCAGCTTACAACCGACCGTG
GTGATGCGATCTCCAGGGTTGTCTGTTGACATCCGGGCCTACCCATTCAC
CCACTCTTGTCTTGTGCCTGACGTTGTTGTGACCACACTGCGCAATGTCA
AACGCTACGTCACGATGGG

Coding sequence (CDS) from alignment at Scaffold_589:77650..79468-

>EsuBft993_3a-0001 ID=EsuBft993_3a-0001|Name=EsuBft993_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=954bp|location=Sequence derived from alignment at Scaffold_589:77650..79468- (Ectocarpus subulatus male Bft15b)
ATGCATGAAACGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCA
GCCATGTGTAGGCTGCGTGGAGGCGAAGGGCAGGCGGGCACCGGTGCCGC
GGCATGGCACCCGCTCGGCGGTACCGTTCGGCAAAGTCCACATTGACCTC
ACGGACCCGCTCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTT
CGTGGACATCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGA
GCGACACCCTGAAGTTCGTGCAGCGGTTCCTCGCCGGCATGAACTGCATG
GGCACTCCAGGGTGTTTCCGCATGGACAACGGCGACGAGTTCGCCGGCTC
CGCCTTCACCTCGTTCTGCGACGCTGCTGACATTCGGCGCGAGTACACCT
CGCCCGACACCCCCAAGCAAAACACGGTGGTTGAGAGCGCCATATGGCGC
GCCATGAAGGGGGGCCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCA
CGTCGACCTCTCCTCCATCCCCAACGTCGGCGTCAACGGACATCGCCTGT
GGCTCGCGTCGGCGCTGTGGGCATTCGCCTGCTTCAACCGCTCCGCGACG
AAGGCCAACCTGGGCTGGATGTCGCCGTTTGAGGCGTTCTTCGGCCGGAA
GCCGCCCCTCACCGTCGTCCCTTTTTTCCAGGAGGGGATGATGCGCGTGA
AGCGGGCCACGAAGGCGGACGTCCAATCCGCGCGGTGCTTCTACCTGCAC
GGCGCCAACAACCACTCAACGTCTACCGCCGTCGTTCTGCGCGCTGACAC
CGGCTGCCTCGCCCTCACCAACAACGTGTGGGTCAACCGCCGGGCAGGGG
CGCCGGCGCCGGTGCCGGACATCGGGGGGGTTTCTTCGGTCACCGCGGCG
CCCTCGCCGGCCACCGCCGTACCACCGCTCTCCACCACCGTCTTGGTCTG
TTAG