EsuBft993_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft993_2a-0001
Unique Name	EsuBft993_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_589	contig	Scaffold_589:83569..89107 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft993_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	502
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft993_2a	EsuBft993_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_589 83569..89107 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_2a-0001	EsuBft993_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_589 83589..85181 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_2a-0001-exon	agat-exon-45680	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 83569..84258 +
EsuBft993_2a-0001-exon	EsuBft993_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 84526..84926 +
EsuBft993_2a-0001-exon	agat-exon-45681	Ectocarpus subulatus male Bft15b	exon	Scaffold_589 85173..89107 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_2a-0001-exon	agat-five_prime_utr-15565	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_589 83569..83588 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_2a-0001-cds	EsuBft993_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_589 83589..84258 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft993_2a-0001-exon	agat-three_prime_utr-23863	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_589 85182..89107 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_589:83569..89107+
coding sequence from alignment at Scaffold_589:83569..89107+

spliced messenger RNA

>EsuBft993_2a-0001 ID=EsuBft993_2a-0001|Name=EsuBft993_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5026bp|location=Sequence derived from alignment at Scaffold_589:83569..89107+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GACGGGCTACTGGTCGCCGGATGGCTGCTACCCCAGCCAGATACAGAAAG
GAGGGCCATCTTGGCGCCGCTGCCGGCGAGGGTTCGAGCGCGCGCGGAAT
GCTCCCAGGCATCTCTGGCATTCCGTCGGCGCTACACACCCCTGATCCAT
CTCCCCCTCCGGCGAGGGCCGCCATAGGGGCTGGGTCATCAGGTCCTCCG
AAGATGGCGGAAACCCTGCTTGATATCATGAGGGACGAGGAGGTCGGCGG
CATTGGTGCCGGCAGCGATGATGTCGGAGGCGATGATGGTACCGGTGGCG
ACAGCAGTAGTGACCACTCCTTCGATACACAACACCCTTCCAGCAACAAC
GGCGCGGCAACCGGAAGCTCAGCGCGCACGGCGCTTGATGCACCGGTACT
CACTGTTGTGATGGAGAAGGGTAAAACACCGTCGAGGGCGAAATCTCCAT
CCCCAACGCCGCAGCAGTCGGTGGCGTCCGCCATGACCCAGAGGTCCCTC
AAACGCAACCAGAACAAGCCGTACTCAGCGTGGCCTGTCAGCCTCCTACA
GATCGCTATCCAGGCGCGAGGTATCTCCGGCCTTTCGAGGGAGAGGAGCA
GCTTAGTGTTGGAGAAGGCCCTAGCCGATGTCGACAAGGTGTGTGGGCGC
CCAAGCCCCTACTACGCGGATCTCGAGGATAAAGCAACAGGTGAGACCCC
GGCCTCCAAGCCCCTAACGGCGTCACCAGAGACCGTCGAGGTTCCGGAGA
CCTTGGTTATGGCTGTGCGTAGCGTCGTTCGCAGTGGGGCGAGCATTAAC
CCGAAGAAAATGATGGACTTGGAAGAGAATGCCTACCTCGCCAGTCGCCT
TTTGGAGGTGATAGCGGATGAAGACCGCGCGTCAGGGGCCGGCGTCACCA
CCGCCGGCCGAAGGAAGAGCAAGCATTGCGTTCCCCGGGCGGTGGAGCTG
ATGGTCGCCGAGCGCTTCAGGGAGCGCCTTGCCGCGAGCAGGACGCAGTT
GTCTAGGACGGAGCTCGACAATAAGGAGACGGGCAACAAGCGGTCGGTAT
ACTTTGAGCTATGGAAGGACTTCAAGGACACGGACGTGGAGGAGCTTTAG
GGGGAGGAACCCTTTTGTGTGACAACGGGTTGTTGACGTCCTACCCAGCA
GCAAGAACGTGTGCCAGCGCTCATTTCAAGGTATTGAAAAAAAAAGCGAT
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AACGCCCACCTCAAGGCCAAGAAAAAGCAGGCTAAGAACGCCGTCAGCGT
GCAAGAGACGGCCGCGGTTGCCATGCACTCAGTGGCGTCTGGACTTGGAC
TGCCCCCCGGCGGATTAAGCGAGCTATTTCGGCCAGCGTCCGAACCCGCC
CCCGCCGCAGCACCTTCCCCGCAGAACATCTTACATGAAAAGACCGCAAA
ATTGAGGTTTTTCGACACATTGTTCGAATCTTTCCAAGCCGCCACGAAAA
ATCTCAAACAAGCCAAAGCAGAGGCGGCAGGCGGCGACAGCGCGGCGCTA
GAAATGGTCGGTTTTCTGGAAAAAAATATTGCGAAGATTAGAACCGAGAT
GGCTGAATGGGACAAGAGTCCCCTTTGAGGGACAGCCCGCGGTCCCTCCC
CGATTCCACATGTGCAAGAGCGATCGATTGTGTTTTAGTGGCGGTTGGTG
TAAGATCGTTCGTGTGTGGGCGGGGGAGGGAGAGGGCAGATCGCTTTCAC
TTGCCGTACCGTTTGTCTTATGTCGGGTGGGTGTTTGACGAGTGCACCAC
GTGTAGCACACGCATGGAGAACGCGTAGCGATCGCTCAAAGTTCGATGTT
TTTTTTAGCCACGTACAGCAGTACCACTTGTTTTTTTCTTTGAGTTTTTC
ACCAACCACCGTCTGCATTCGTAGAT

protein sequence of EsuBft993_2a-0001

>EsuBft993_2 ID=EsuBft993_2|Name=EsuBft993_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=359bp
MAATPARYRKEGHLGAAAGEGSSARGMLPGISGIPSALHTPDPSPPPARA
AIGAGSSGPPKMAETLLDIMRDEEVGGIGAGSDDVGGDDGTGGDSSSDHS
FDTQHPSSNNGAATGSSARTALDAPVLTVVMEKGKTPSRAKSPSPTPQQS
VASAMTQRSLKRNQNKPYSAWPVSLLQIAIQARGISGLSRERSSLVLEKA
LADVDKVCGRPSPYYADLEDKATGETPASKPLTASPETVEVPETLVMAVR
SVVRSGASINPKKMMDLEENAYLASRLLEVIADEDRASGAGVTTAGRRKS
KHCVPRAVELMVAERFRERLAASRTQLSRTELDNKETGNKRSVYFELWKD
FKDTDVEEL

mRNA from alignment at Scaffold_589:83569..89107+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft993_2a-0001 ID=EsuBft993_2a-0001|Name=EsuBft993_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5539bp|location=Sequence derived from alignment at Scaffold_589:83569..89107+ (Ectocarpus subulatus male Bft15b)
GACGGGCTACTGGTCGCCGGATGGCTGCTACCCCAGCCAGATACAGAAAG
GAGGGCCATCTTGGCGCCGCTGCCGGCGAGGGTTCGAGCGCGCGCGGAAT
GCTCCCAGGCATCTCTGGCATTCCGTCGGCGCTACACACCCCTGATCCAT
CTCCCCCTCCGGCGAGGGCCGCCATAGGGGCTGGGTCATCAGGTCCTCCG
AAGATGGCGGAAACCCTGCTTGATATCATGAGGGACGAGGAGGTCGGCGG
CATTGGTGCCGGCAGCGATGATGTCGGAGGCGATGATGGTACCGGTGGCG
ACAGCAGTAGTGACCACTCCTTCGATACACAACACCCTTCCAGCAACAAC
GGCGCGGCAACCGGAAGCTCAGCGCGCACGGCGCTTGATGCACCGGTACT
CACTGTTGTGATGGAGAAGGGTAAAACACCGTCGAGGGCGAAATCTCCAT
CCCCAACGCCGCAGCAGTCGGTGGCGTCCGCCATGACCCAGAGGTCCCTC
AAACGCAACCAGAACAAGCCGTACTCAGCGTGGCCTGTCAGCCTCCTACA
GATCGCTATCCAGGCGCGAGGTATCTCCGGCCTTTCGAGGGAGAGGAGCA
GCTTAGTGTTGGAGAAGGCCCTAGCCGATGTCGACAAGGTGTGTGGGCGC
CCAAGCCCCTACTACGCGGATCTCGAGGATAAAGCAACAGGTGGGAACCC
TTCTGTGCGTTAGACTTCGCCCTCTCTCATCCCACTGTTCATCTACCTCT
CTCTGTACAATTTCTCTCTCGCTTCCGTCTCTCTCTCACACACACGACGA
AAGAGCATATGTAGGTGGTAGACTTCGCGCTATATTGGTGCATGTCCCTA
CGGCTGCATCGGCACCAATGCCATGTGCACGAAAGCTCCAACCCTAACCG
CTTTTCTTCTTGACACCTCTCGGTTCCACCCATGGTTGTCAACCTGCGTG
CTTACAGGTGAGACCCCGGCCTCCAAGCCCCTAACGGCGTCACCAGAGAC
CGTCGAGGTTCCGGAGACCTTGGTTATGGCTGTGCGTAGCGTCGTTCGCA
GTGGGGCGAGCATTAACCCGAAGAAAATGATGGACTTGGAAGAGAATGCC
TACCTCGCCAGTCGCCTTTTGGAGGTGATAGCGGATGAAGACCGCGCGTC
AGGGGCCGGCGTCACCACCGCCGGCCGAAGGAAGAGCAAGCATTGCGTTC
CCCGGGCGGTGGAGCTGATGGTCGCCGAGCGCTTCAGGGAGCGCCTTGCC
GCGAGCAGGACGCAGTTGTCTAGGACGGAGCTCGACAATAAGGAGACGGG
CAACAAGCGGTCGGTATACTTTGAGCTATGGAAGGACTTCAAGGACACGG
ACGTGGAGGTGAGGTCTGAATGTATACCGTTTCCGTTAGCCCGCAGGAAC
GTATTTTGTTGAGGTTACGTTCAAGTCTAGTTCGTATGCTCACAGCAATC
TAGCACCCAGGGTCAGGGGGCTTGAATCCCGTCGAGAGGGAGATTTTATT
GCGAAGTGAGTTTTCATCTCGCGCCCGTCCTGGCGCTAGTTATTCTTTAG
TGTGAACTCTTCTCGCGTTTTTGTCGAAGGCAAGGACCGCAAGAGGGTGG
GTAGGAGCTTTAGGGGGAGGAACCCTTTTGTGTGACAACGGGTTGTTGAC
GTCCTACCCAGCAGCAAGAACGTGTGCCAGCGCTCATTTCAAGGTATTGA
AAAAAAAAGCGATGTGCTTCGTCAAATTCTATCGGCCTGTTGTCCCCCCC
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AGCGAGGGAGGACAACGCCCACCTCAAGGCCAAGAAAAAGCAGGCTAAGA
ACGCCGTCAGCGTGCAAGAGACGGCCGCGGTTGCCATGCACTCAGTGGCG
TCTGGACTTGGACTGCCCCCCGGCGGATTAAGCGAGCTATTTCGGCCAGC
GTCCGAACCCGCCCCCGCCGCAGCACCTTCCCCGCAGAACATCTTACATG
AAAAGACCGCAAAATTGAGGTTTTTCGACACATTGTTCGAATCTTTCCAA
GCCGCCACGAAAAATCTCAAACAAGCCAAAGCAGAGGCGGCAGGCGGCGA
CAGCGCGGCGCTAGAAATGGTCGGTTTTCTGGAAAAAAATATTGCGAAGA
TTAGAACCGAGATGGCTGAATGGGACAAGAGTCCCCTTTGAGGGACAGCC
CGCGGTCCCTCCCCGATTCCACATGTGCAAGAGCGATCGATTGTGTTTTA
GTGGCGGTTGGTGTAAGATCGTTCGTGTGTGGGCGGGGGAGGGAGAGGGC
AGATCGCTTTCACTTGCCGTACCGTTTGTCTTATGTCGGGTGGGTGTTTG
ACGAGTGCACCACGTGTAGCACACGCATGGAGAACGCGTAGCGATCGCTC
AAAGTTCGATGTTTTTTTTAGCCACGTACAGCAGTACCACTTGTTTTTTT
CTTTGAGTTTTTCACCAACCACCGTCTGCATTCGTAGAT

Coding sequence (CDS) from alignment at Scaffold_589:83569..89107+

>EsuBft993_2a-0001 ID=EsuBft993_2a-0001|Name=EsuBft993_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1080bp|location=Sequence derived from alignment at Scaffold_589:83569..89107+ (Ectocarpus subulatus male Bft15b)
ATGGCTGCTACCCCAGCCAGATACAGAAAGGAGGGCCATCTTGGCGCCGC
TGCCGGCGAGGGTTCGAGCGCGCGCGGAATGCTCCCAGGCATCTCTGGCA
TTCCGTCGGCGCTACACACCCCTGATCCATCTCCCCCTCCGGCGAGGGCC
GCCATAGGGGCTGGGTCATCAGGTCCTCCGAAGATGGCGGAAACCCTGCT
TGATATCATGAGGGACGAGGAGGTCGGCGGCATTGGTGCCGGCAGCGATG
ATGTCGGAGGCGATGATGGTACCGGTGGCGACAGCAGTAGTGACCACTCC
TTCGATACACAACACCCTTCCAGCAACAACGGCGCGGCAACCGGAAGCTC
AGCGCGCACGGCGCTTGATGCACCGGTACTCACTGTTGTGATGGAGAAGG
GTAAAACACCGTCGAGGGCGAAATCTCCATCCCCAACGCCGCAGCAGTCG
GTGGCGTCCGCCATGACCCAGAGGTCCCTCAAACGCAACCAGAACAAGCC
GTACTCAGCGTGGCCTGTCAGCCTCCTACAGATCGCTATCCAGGCGCGAG
GTATCTCCGGCCTTTCGAGGGAGAGGAGCAGCTTAGTGTTGGAGAAGGCC
CTAGCCGATGTCGACAAGGTGTGTGGGCGCCCAAGCCCCTACTACGCGGA
TCTCGAGGATAAAGCAACAGGTGAGACCCCGGCCTCCAAGCCCCTAACGG
CGTCACCAGAGACCGTCGAGGTTCCGGAGACCTTGGTTATGGCTGTGCGT
AGCGTCGTTCGCAGTGGGGCGAGCATTAACCCGAAGAAAATGATGGACTT
GGAAGAGAATGCCTACCTCGCCAGTCGCCTTTTGGAGGTGATAGCGGATG
AAGACCGCGCGTCAGGGGCCGGCGTCACCACCGCCGGCCGAAGGAAGAGC
AAGCATTGCGTTCCCCGGGCGGTGGAGCTGATGGTCGCCGAGCGCTTCAG
GGAGCGCCTTGCCGCGAGCAGGACGCAGTTGTCTAGGACGGAGCTCGACA
ATAAGGAGACGGGCAACAAGCGGTCGGTATACTTTGAGCTATGGAAGGAC
TTCAAGGACACGGACGTGGAGGAGCTTTAG