EsuBft993_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft993_10a-0001
Unique NameEsuBft993_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_589contigScaffold_589:10019..10967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft993_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length84
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft993_10aEsuBft993_10aEctocarpus subulatus male Bft15bgeneScaffold_589 10019..10967 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_10a-0001-exonEsuBft993_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_589 10019..10684 -
EsuBft993_10a-0001-exonagat-exon-45700Ectocarpus subulatus male Bft15bexonScaffold_589 10786..10967 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_10a-0001-exonagat-three_prime_utr-23862Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_589 10019..10446 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_10a-0001-cdsEsuBft993_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_589 10447..10684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft993_10a-0001EsuBft993_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_589 10447..10967 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft993_10a-0001 ID=EsuBft993_10a-0001|Name=EsuBft993_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=848bp|location=Sequence derived from alignment at Scaffold_589:10019..10967- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCATACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAA
GAAGGGCAGGTCGGCGGGGAAGAAGGCGACGGTGGTGACGGACGCGGAGG
CCCTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCG
CCGGAGAGTCTCGAGAAGATGATTTCGGTCATGGTCGCCGGCCAGACGTA
CAAGCAGACAGATCGGTTTGTGTGCCTCGGACGTACAATCTCCGCGGACG
GGAAAGCCGACCAGGATTTCACGAGTCGCAGCCGCCGAGCGTGGAAGTGC
GACCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCA
GCTCAAGATCCGGCTACTCCAGGCTGAGTGGTGGAGACTCTCCTGTATGG
GTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGA
CCCACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGC
TCAGACCGCCCCCTGTCCTATGCCCAGGCCCTTATCCAGGCAGGCTGCGA
GGAAACCATCGAGGCCACCATGCGCAAACGGAGACTGTATTTCGCGGCCT
TTGTTATGCGCATGGAGGATAACCGCCTCCCCAAGCGCATGCTGTTAGGA
GCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGT
GTCTCGTCTAGGAGAGGATCTCGTGGCCTTCAACATGAGAGACGAAACGT
AAGGGGGTGAATGGAAAGAGAGCACCAAGAACCCGGAGGTGTGGTACAAC
CAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATTGCACAGGCAG
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protein sequence of EsuBft993_10a-0001

>EsuBft993_10 ID=EsuBft993_10|Name=EsuBft993_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=139bp
MLPYMVKIGTQVEYTGKKGRSAGKKATVVTDAEALWAMLYADDAAIVSRS
PESLEKMISVMVAGQTYKQTDRFVCLGRTISADGKADQDFTSRSRRAWKC
DRRNSASMYDRRRADRQLKIRLLQAEWWRLSCMGAPRGA
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mRNA from alignment at Scaffold_589:10019..10967-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft993_10a-0001 ID=EsuBft993_10a-0001|Name=EsuBft993_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=949bp|location=Sequence derived from alignment at Scaffold_589:10019..10967- (Ectocarpus subulatus male Bft15b)
ATGCTTCCATACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAA
GAAGGGCAGGTCGGCGGGGAAGAAGGCGACGGTGGTGACGGACGCGGAGG
CCCTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCG
CCGGAGAGTCTCGAGAAGATGATTTCGGTCATGTACGCGTGGCCGGCCTG
TTCGGACTGATGGTGTCGGAGCCAAAGACGGAGATCATGAGCATGCTGCC
GAAAGGGATCGAGGAACGCCCGTTCACGGTCAGGGTCGCCGGCCAGACGT
ACAAGCAGACAGATCGGTTTGTGTGCCTCGGACGTACAATCTCCGCGGAC
GGGAAAGCCGACCAGGATTTCACGAGTCGCAGCCGCCGAGCGTGGAAGTG
CGACCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCC
AGCTCAAGATCCGGCTACTCCAGGCTGAGTGGTGGAGACTCTCCTGTATG
GGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGG
ACCCACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAACG
CTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTTATCCAGGCAGGCTGCG
AGGAAACCATCGAGGCCACCATGCGCAAACGGAGACTGTATTTCGCGGCC
TTTGTTATGCGCATGGAGGATAACCGCCTCCCCAAGCGCATGCTGTTAGG
AGCGATGGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGG
TGTCTCGTCTAGGAGAGGATCTCGTGGCCTTCAACATGAGAGACGAAACG
TAAGGGGGTGAATGGAAAGAGAGCACCAAGAACCCGGAGGTGTGGTACAA
CCAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATTGCACAGGCAG
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Coding sequence (CDS) from alignment at Scaffold_589:10019..10967-

>EsuBft993_10a-0001 ID=EsuBft993_10a-0001|Name=EsuBft993_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=420bp|location=Sequence derived from alignment at Scaffold_589:10019..10967- (Ectocarpus subulatus male Bft15b)
ATGCTTCCATACATGGTCAAGATCGGGACACAAGTGGAGTACACGGGCAA
GAAGGGCAGGTCGGCGGGGAAGAAGGCGACGGTGGTGACGGACGCGGAGG
CCCTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGTCTCGCGCTCG
CCGGAGAGTCTCGAGAAGATGATTTCGGTCATGGTCGCCGGCCAGACGTA
CAAGCAGACAGATCGGTTTGTGTGCCTCGGACGTACAATCTCCGCGGACG
GGAAAGCCGACCAGGATTTCACGAGTCGCAGCCGCCGAGCGTGGAAGTGC
GACCGCCGGAACAGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCA
GCTCAAGATCCGGCTACTCCAGGCTGAGTGGTGGAGACTCTCCTGTATGG
GTGCGCCTCGTGGAGCCTAA
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