EsuBft98_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft98_5a-0001
Unique NameEsuBft98_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:243238..246663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8J5
ProteomeIdEsuBft98_5
Protein domainsPTHR13093
Protein domainsIPR007529
Ownerapollo_admin@sb-roscoff.fr
Noteswr1 complex subunit 6 os:arabidopsis thaliana gn:swc6 pe:1 sv:1 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1283
Hectar predicted targeting categoryother localisation
Evalue1.12e-129
EggNOG OGsKOG3362@1|root,KOG3362@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, HIT-type
Ec32 orthologEc-14_003240.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameZNHIT1
KEGG koko:K11663,ko:K12846
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000122,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0002682,GO:0002694,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009890,GO:0009892,GO:0009909,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0031056,GO:0031063,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031491,GO:0031974,GO:0031981,GO:0032268,GO:0032944,GO:0032991,GO:0033043,GO:0033044,GO:0034728,GO:0040008,GO:0042127,GO:0042129,GO:0042742,GO:0042802,GO:0042826,GO:0043044,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045786,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048580,GO:0048638,GO:0048831,GO:0050670,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051249,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070603,GO:0070663,GO:0071824,GO:0071840,GO:0080090,GO:0090311,GO:0097346,GO:0098542,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2001141
Descriptionregulation of histone deacetylation
COG categoryU
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0050794
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft98_5aEsuBft98_5aEctocarpus subulatus male Bft15bgeneScaffold_510 243238..246663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_5a-0001EsuBft98_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 243893..246611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_5a-0001-exonEsuBft98_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 243238..244093 -
EsuBft98_5a-0001-exonagat-exon-75092Ectocarpus subulatus male Bft15bexonScaffold_510 244448..244493 -
EsuBft98_5a-0001-exonagat-exon-75091Ectocarpus subulatus male Bft15bexonScaffold_510 245022..245149 -
EsuBft98_5a-0001-exonagat-exon-75089Ectocarpus subulatus male Bft15bexonScaffold_510 245668..245721 -
EsuBft98_5a-0001-exonagat-exon-75090Ectocarpus subulatus male Bft15bexonScaffold_510 246222..246280 -
EsuBft98_5a-0001-exonagat-exon-75088Ectocarpus subulatus male Bft15bexonScaffold_510 246524..246663 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_5a-0001-exonagat-three_prime_utr-23840Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_510 243238..243892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_5a-0001-cdsEsuBft98_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 243893..244093 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_5a-0001-exonagat-five_prime_utr-15546Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 246612..246663 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft98_5a-0001 ID=EsuBft98_5a-0001|Name=EsuBft98_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1283bp|location=Sequence derived from alignment at Scaffold_510:243238..246663- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTTCGTTTTGGCGCGCCACACACAAGGGGGGAGGCAAGCGAGACTAG
GCATGTCTCAAAGCAAGAGGAAGGCATGGGATGCCACTGTTCAAGCCAGC
GGGCATGTCCCAACGCGTACAAAAACTAAACGGGCTTCAGGACGTACGGT
GGTGCTCAGTAAGTCGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGG
TCAAGGACGCGCGTCTAGAAGCGTTGGAAGCGGATAACTACACCGAAGAC
CACGGAGGAGAGCAGGATGACGAGTTTGCCTTGGATGAGGACGACGAACG
AGGGGACCGGCCGCGGGGCAGGAGCAGGGCGGGTAAGGCCCCGGGCAACA
AGAGCAAGAACAAGGGAGAGAAGGACCCTTGGAAAGAGCGCAAGTTCAAG
AGCCTGCACCAGGTCCTCTACGAATTGACGAACGAACTCTCGGCGTATCC
GGGCGGGGCGACGGCTGTGAGCATCGAGGCGCCGGTGTCGAAGCACCCGC
CGCGAGCGTTCTGTTCCGTGTGCGGCTACCACGGACTGTACACGTGCACG
CGGTGCGGGTCTCGATTCTGCAGTTCCAAGTGCTGCGAGCAGCACAAGGA
GACGCGTTGTCTCAAGTTCGCATCGTAGATTGTATTCCGTATAATAGAGT
TGTAAAGCAGCGGTAGGGATGCCGCGTACCCACGCAATCTGGATGAAAAA
TAGGTGCCGGTGTTAAAGCAGTTGCAAATCTGCCCTTTTCCGGCGGTACA
CGGCACTCAGGTTCCTGTTTTGAGTGTCGCATTCTGTGTATTGAGAAGGG
TGAATGTCTCCTTCGCGGGGAGGGGGGCGTCGGTTTTTCCCCAGGGAAGT
GTCGGCTTTCCCAAGGGCCAATGCACGACAAATCGAAAAAAAAATGTCTA
GGAGAAAAATGTGTACTCGTGTTTGTGCGACGCGCCGCGTGATGGTTTTG
CAGAAGGAACGGGTCCGACTGAGTTTTTGCACGGCGTTGGAGACGAGTCT
TGTTCGATGGCCTGAAACGTAGAAGATGTTTTCGGAGCGATTCGAGTGTA
CGATCGCAGCGTGTCACAAGGACGGGATGTGCTGCAGGGTTGCTCTCTCC
GTCGAAGGAAGCGGGCTCGTCAAAGCCACAGTTATTTCCTTGACTGATGA
TTCTGTGGAATGTGCATCTCTTCCTGCCGAAGTTGATGGATGTGGGCCAG
CTACCAAGGCCTATGTCGCTGCTGACTTTTGTTACCTCACAATCACTGGA
GTGTTCAAGAGCTAAGAGCCTCGCTCGTTGCCC
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protein sequence of EsuBft98_5a-0001

>EsuBft98_5 ID=EsuBft98_5|Name=EsuBft98_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQV
KDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNK
SKNKGEKDPWKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPP
RAFCSVCGYHGLYTCTRCGSRFCSSKCCEQHKETRCLKFAS
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mRNA from alignment at Scaffold_510:243238..246663-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft98_5a-0001 ID=EsuBft98_5a-0001|Name=EsuBft98_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3426bp|location=Sequence derived from alignment at Scaffold_510:243238..246663- (Ectocarpus subulatus male Bft15b)
GTTGTTCGTTTTGGCGCGCCACACACAAGGGGGGAGGCAAGCGAGACTAG
GCATGTCTCAAAGCAAGAGGAAGGCATGGGATGCCACTGTTCAAGCCAGC
GGGCATGTCCCAACGCGTACAAAAACTAAACGGGCTTCAGGTGAGAGACC
TCACACAAACACAACTGCGACAGAGAGCCAGCGGATGCGTGTAGTCATGA
CCACAAACCGCTCAAACGGGAGTGGGAGGCTGTGCAAAGGCAGCGAAGTA
TCCCATCGAAAGCGCTACTGACGAGTACTCAAGGAGTTGTAGTGCATGCC
ATTTTGACCTAAACTGTTGCGAGTCGATGACAAAAGACAGCCACCGACCC
CCCCTCTACCTGCCCCCGCCACCGCCTTGCTAGGACGTACGGTGGTGCTC
AGTAAGTCGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGGTTTGTGC
ATGGTGGATGTGACCGTAGAAGAGAGACACGGAGACCGCGATTGCGGATA
CGAGAAGGGGCTACCGGACGGTGGTGTTCTACAGCAGCAGCAGTACAGCA
GTAGGCTACGACTTGACGGTGAAACCACCAGACCAAGGGGCAAATAGCAC
TTGAGATAGAGGCAATAGGGCATGCCACGCGTTCTCTGCATTATAGATAC
ATTGGAGGGTGCCCCAAGTTGTCACAATCGAACAGCCGCATGTCGCGTTC
TGTTGTGGTAACACGGGGTTTAGGCAAAAGTGAAAGCACGACAACTATTT
GCCCTGTTCGCAACACCGCAGAAATGGTGCCGTCCTCTTCAGATACATGA
ACCGGTATGGGCGTTCGATCACGCAAGTGATCCTCCGCTGCTGCTGGGCT
TGTCGTCTTTCGGCGTTTTCTCATTCACATTGTTCCGACCAGGACTGTTG
CTGCGGTGCTACTGTCTTAACCCTCCCGCCGAAATGTGACAGGTCAAGGA
CGCGCGTCTAGAAGCGTTGGAAGCGGATAACTACACCGAAGACCACGTAA
GAATCGTTGAGAACGCTGCCCCTTTGTCCTGTGAAGCTGGTTCCGTTCCG
TCCGTGCGTTGATGTTGTTGCCCTCGATAAGCGGAGTTTCTCAGCCTCAT
TTCGACGAGGTCGCACGGCCATGCCTTTTTCCTGTGCTGTTTTCCCTCCA
CGTGACCTCCGGACGAAGGGTGGTAACGCTCTGGCGTGCCCGGCGGGAAA
CAGCAACATCTCTAGGGAGTTAAAGCCACAACGTTTAGAGTAACGCCTGG
GCACCTATAGTACAAAGTAGGTGTCGTTCAACTTCCACCCCCCCCTCCGA
GGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGCACACCCCCTC
CCTCCTTCTTCCTTCCACATCCTGAACAGGTTTCTGAATAAGGAAAACGT
CGCGATCGCGAACCCCGTAGCCAGAACGGCCCAAAACACCCTGCATCGAT
ATGTTGTCGCTAGTATAGTATATGTCCACCCACCGCCACAAGTGCTATTT
GTGTTGCTCTATAGGGAGGAGAGCAGGATGACGAGTTTGCCTTGGATGAG
GACGACGAACGAGGGGACCGGCCGCGGGGCAGGAGCAGGGCGGGTAAGGC
CCCGGGCAACAAGAGCAAGAACAAGGGAGAGAAGGACCCTTGGTGAGGGT
ACGGCAGCGTGTTGGTTGCGGCTCACGCGCCTGCTCCTGTCGCTTGGGTG
GTTGGTCGTTAAAACGGACGGTGGCAGTGGGGGCTATGTAGTCGTGCGGG
AGGAAGTTTTCTAGTGGTGCGTGCGCCGTTTAGGTCGAAGCTGGGAGATG
CTGCTATAGTTCGTTTAGACGGGTTGTGACTTCTACACGAAATTCTGCAC
GAACTGCATCGCACACGTTGTCTGGAAGCTGCAATGGGCTACAGCAGTGG
TCAGGGCCGCCGAGTGTGTGTATGTGGCCACTCCGAATTCCACGGCGTTG
CCCGTCAGGACATTAGGCGTCCTCCCCGAACCACAATGTGAAACAACACA
CAGCAGTAGTTGGACTTCACCCGGTTATTGTTGTACACCAGCGCCTGGCG
TATGCTCGCCCGCTCTACATTCAACCTGATGTCGCTCTAAAATGATGCGC
ATGTCCCCCGCGATACCCCTCTGTCTGCCTCTTGCTAACCACATATTCAC
TGCGACCGCAATGAATCCAGGAAAGAGCGCAAGTTCAAGAGCCTGCACCA
GGTCCTCTACGAATTGGTAAGATATTCCTTGCACGCTGTTCTCGCAAGAG
CCACCAAAAAGCGCCCCTCATGTTGCCGTTGCACGTAGAGAACGTGGTTG
GTGGTGGAGAGTTAGTCCCCCCGCATTGCGCTCGCTTTCGGACGGAGTCG
AGGCATGGTGATATACGTAGCTTGTGAAAAGAAAATTCCCTGGCAAGAGG
AAGTCCCACCGGCAGAGAAACGTTGTTGCGAAGATCGGTTTTGCTGAAAA
CGGAGGTGGCTGGGGATACTCGATGCAAATAGAACCCGCCCCCCGTCCTC
CCTCCTCCTCCCCTCACTTGCTTGCATGCTGGTTGATTGTTTGTTGTGCT
TTCCCCTCCTCTCCGTACAGACGAACGAACTCTCGGCGTATCCGGGCGGG
GCGACGGCTGTGAGCATCGAGGCGCCGGTGTCGAAGCACCCGCCGCGAGC
GTTCTGTTCCGTGTGCGGCTACCACGGACTGTACACGTGCACGCGGTGCG
GGTCTCGATTCTGCAGTTCCAAGTGCTGCGAGCAGCACAAGGAGACGCGT
TGTCTCAAGTTCGCATCGTAGATTGTATTCCGTATAATAGAGTTGTAAAG
CAGCGGTAGGGATGCCGCGTACCCACGCAATCTGGATGAAAAATAGGTGC
CGGTGTTAAAGCAGTTGCAAATCTGCCCTTTTCCGGCGGTACACGGCACT
CAGGTTCCTGTTTTGAGTGTCGCATTCTGTGTATTGAGAAGGGTGAATGT
CTCCTTCGCGGGGAGGGGGGCGTCGGTTTTTCCCCAGGGAAGTGTCGGCT
TTCCCAAGGGCCAATGCACGACAAATCGAAAAAAAAATGTCTAGGAGAAA
AATGTGTACTCGTGTTTGTGCGACGCGCCGCGTGATGGTTTTGCAGAAGG
AACGGGTCCGACTGAGTTTTTGCACGGCGTTGGAGACGAGTCTTGTTCGA
TGGCCTGAAACGTAGAAGATGTTTTCGGAGCGATTCGAGTGTACGATCGC
AGCGTGTCACAAGGACGGGATGTGCTGCAGGGTTGCTCTCTCCGTCGAAG
GAAGCGGGCTCGTCAAAGCCACAGTTATTTCCTTGACTGATGATTCTGTG
GAATGTGCATCTCTTCCTGCCGAAGTTGATGGATGTGGGCCAGCTACCAA
GGCCTATGTCGCTGCTGACTTTTGTTACCTCACAATCACTGGAGTGTTCA
AGAGCTAAGAGCCTCGCTCGTTGCCC
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Coding sequence (CDS) from alignment at Scaffold_510:243238..246663-

>EsuBft98_5a-0001 ID=EsuBft98_5a-0001|Name=EsuBft98_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_510:243238..246663- (Ectocarpus subulatus male Bft15b)
ATGTCTCAAAGCAAGAGGAAGGCATGGGATGCCACTGTTCAAGCCAGCGG
GCATGTCCCAACGCGTACAAAAACTAAACGGGCTTCAGGACGTACGGTGG
TGCTCAGTAAGTCGATGCGCGTTGTGGATGAAGAAACGAGAAATCAGGTC
AAGGACGCGCGTCTAGAAGCGTTGGAAGCGGATAACTACACCGAAGACCA
CGGAGGAGAGCAGGATGACGAGTTTGCCTTGGATGAGGACGACGAACGAG
GGGACCGGCCGCGGGGCAGGAGCAGGGCGGGTAAGGCCCCGGGCAACAAG
AGCAAGAACAAGGGAGAGAAGGACCCTTGGAAAGAGCGCAAGTTCAAGAG
CCTGCACCAGGTCCTCTACGAATTGACGAACGAACTCTCGGCGTATCCGG
GCGGGGCGACGGCTGTGAGCATCGAGGCGCCGGTGTCGAAGCACCCGCCG
CGAGCGTTCTGTTCCGTGTGCGGCTACCACGGACTGTACACGTGCACGCG
GTGCGGGTCTCGATTCTGCAGTTCCAAGTGCTGCGAGCAGCACAAGGAGA
CGCGTTGTCTCAAGTTCGCATCGTAG
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