EsuBft98_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft98_23a-0001
Unique NameEsuBft98_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:34302..36972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft98_23
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length128
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft98_23aEsuBft98_23aEctocarpus subulatus male Bft15bgeneScaffold_510 34302..36972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_23a-0001EsuBft98_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 34763..36644 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_23a-0001-exonagat-exon-75206Ectocarpus subulatus male Bft15bexonScaffold_510 34302..34951 -
EsuBft98_23a-0001-exonEsuBft98_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 35137..35292 -
EsuBft98_23a-0001-exonagat-exon-75208Ectocarpus subulatus male Bft15bexonScaffold_510 35673..35780 -
EsuBft98_23a-0001-exonagat-exon-75207Ectocarpus subulatus male Bft15bexonScaffold_510 36603..36972 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_23a-0001-exonagat-three_prime_utr-23836Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_510 34302..34762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_23a-0001-cdsEsuBft98_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 34763..34951 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_23a-0001-exonagat-five_prime_utr-15542Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 36645..36972 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft98_23a-0001 ID=EsuBft98_23a-0001|Name=EsuBft98_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1284bp|location=Sequence derived from alignment at Scaffold_510:34302..36972- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCGTGGATGCACCCACTGCCGCACGCACCGCGCGAGATAACACCTGG
CCTACCAGCCTGCTCAGCACACCATCCTCCCTGGAAGGAAACACCTGTGA
CCCTTGCATGCCTACTTCAACAAAGTCTAGAGTCTAGACCCAGCCTAGAG
GGCTAATGTGTAGAGAAGCGCAGAAGTGGGAAGCGGGAGTGCGGGAGTGG
GATTGAAAACGCGGAGGAACCTCTGAGGAACCAACGGAGCGCACGAACCC
ACCAATAGGACAGTAAGACCACATCTCTCCTCCGAGCCGCCAAGATCCTC
TTGCAGACTGGGCAGCACGGCTGGGAAAATGGATGACCTACTTCAACCAA
CATGCTGGGCAGGCATGCAGGCGATGGGAACCCTGCTGGGTACGATGTTT
GGATTTGTGTCTGCTGCTCTTCTCACGCCGATCCACGGCGGGGAGAGAGA
GCACGGGTTGCCGGCTGCTCCTGGCGTGGTTATGGGGTCCTCTCTCGGCG
TACTTGCAGCCTACTCGGCAGGGGAAGGGACCCAGCCCCTCCGACGACTG
GTCTACCTTCTGCTGCTCAGCGTGGGGGCAGCCGCAGTGACAACCGCAGC
ATGTAGCTGGCTAGCGGGCGATGTCGTCCACAATGGCGGGAGCGTTGGCA
TCATGGTGCTGGCAACAGTGGCGTCGCTAGGCTCGACGGCGGTCTTCACC
ATTGAAAAGCACAACATGCTGATCACACGAGCAGCCACGACTGCGGCATT
CGATGACCGCGAGCGACACGAAGGATTGTCACATCTCCACGAGGAGTCCT
TGATGGATATCAAGGCGATCTGAAATGTACGACATCAAGTGGTGTGGTTA
AAAGCGTTTGAAATCAGTAGTTCTACGGTGGTTCCTTGTAAATGTTTGTA
CAGAGCCGAAGTGTTTAAGGATCAGAGCGTAGGTGATAAAGGTCAATACG
GTCAGGCAACGTTGGAAGGCTTGGTGTGTGCTGGTATGATCTGGTATGTT
GAGAACGAAGGTCTTGCTGTTGGAGTGTGGAAGTTTGTCGTCGAAGGGCC
CTCTCACGACACGAGGTTTGGGGGACCCCTCGCAAAACGCCACCATTGGC
GCAGATTTGTTCTCGCACTCTAGCTGCCGTGCGGTGAGATCATGTGCGTC
GGCTACGTGGGTTGATTCCACCGCCGTGCCACCTGCTGCTTGTCTTGCGG
CCCCCTAAAATCCGGATGAAAGTTACACGCGCTGGTCGATATCGACGTGC
GTGCACGGGCGGCGCCGATTGATACCGCCCGGCC
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protein sequence of EsuBft98_23a-0001

>EsuBft98_23 ID=EsuBft98_23|Name=EsuBft98_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=164bp
MDDLLQPTCWAGMQAMGTLLGTMFGFVSAALLTPIHGGEREHGLPAAPGV
VMGSSLGVLAAYSAGEGTQPLRRLVYLLLLSVGAAAVTTAACSWLAGDVV
HNGGSVGIMVLATVASLGSTAVFTIEKHNMLITRAATTAAFDDRERHEGL
SHLHEESLMDIKAI
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mRNA from alignment at Scaffold_510:34302..36972-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft98_23a-0001 ID=EsuBft98_23a-0001|Name=EsuBft98_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2671bp|location=Sequence derived from alignment at Scaffold_510:34302..36972- (Ectocarpus subulatus male Bft15b)
CTCTCGTGGATGCACCCACTGCCGCACGCACCGCGCGAGATAACACCTGG
CCTACCAGCCTGCTCAGCACACCATCCTCCCTGGAAGGAAACACCTGTGA
CCCTTGCATGCCTACTTCAACAAAGTCTAGAGTCTAGACCCAGCCTAGAG
GGCTAATGTGTAGAGAAGCGCAGAAGTGGGAAGCGGGAGTGCGGGAGTGG
GATTGAAAACGCGGAGGAACCTCTGAGGAACCAACGGAGCGCACGAACCC
ACCAATAGGACAGTAAGACCACATCTCTCCTCCGAGCCGCCAAGATCCTC
TTGCAGACTGGGCAGCACGGCTGGGAAAATGGATGACCTACTTCAACCAA
CATGCTGGGCAGGCATGCAGGTGTTTAGTGTCTCGTACTTTTATATCATG
TGCATAGACCCAGTGCGCCACACGCAAGGCAATTCAGCACATTGACATTT
GCAAAACAGTAGTTGTAGGAAGCTGGTTTTTGTTGTTTTATTTTTCTCCC
ATCATTGGACTCTGTCGTTTGCCCCTCTGGCCCCTATCCTCCACTTCTAC
CAGCTAGACGACCCAACCGGGGTCACATAGGAGGGGGGGGTTGGACCCCC
TCCTGCGGTTCATGCCTGAGATATTTTTATCGCGAGAAGGGTACAGCAAT
CCCTTCCCTCGCGACGTAAGAAGTCGGTCAAGTTTACTAACAACGAGCTT
TGCAGCGCGTCGCTTGTGTGTACAACTGTAGTAGTCCAATCTACAGCAGT
ACCTCCCTTCACAAGTACTCCTTGAAAGTGCCTCGCACCGCCCCGTGTAC
AGCAGTCTATCGTAGGTTGCATAAGATATGAACCCCCTGGACCGATTTGA
AAACTCGATTACTCGGCAGGAAAAACAGTGGCGGTGCCGGAAATGGTGGC
GTTGGAACTGTCTCGTCGAGAGCTTTCCGAACGCGTACATACAGCCGTGT
CATTTTGATGTCGGCATCCTCCTCGTGCCACGCTTGAGGTTTGAAGTTCA
GTCCAGGGAGGTGTGGTTTTTTATGCAATCTACCGTACACACCAAGATAT
GCCGAGATATATATGCAGCAACTATGGAACGGCCTTCCCTACTGTGCGAC
ACCTTGTAACAGGGAGGACCTTGCTTGTAGTGTTTTTGAGGCTACTACGG
CACCGAGTCTTGCTGATCATCAATACCTGCTCCCTTGCACAGGCGATGGG
AACCCTGCTGGGTACGATGTTTGGATTTGTGTCTGCTGCTCTTCTCACGC
CGATCCACGGCGGGGAGAGAGAGCACGGGTTGCCGGCTGCTCCTGGCGTG
GTGAGTCTCCATTGATAACTCGAGCACCGCCCGTGTTTTCCCAGCGAACC
AAGCAAGCTTCACCATGTGCAGTCTTCTTGCTCAGCAACGCGCCCAATGT
TGTTTTCCACATGTTGACTGTGATTTTGACTCCTTAGCCTCTTCGTCGTT
ACCCTTCACATGCGTTCTTGTACCTTTCTTTTACTGTTTCCGTATCATGG
GCAGGTACTCACCGTCGTGTGGTACTCAGTATGAGACCAACTCTGCCCGA
CACGCTGTCGTGTAATGTGTGGGATGTGTCCACTCCTGCAGTTGTACCCA
ATCAATCCCGCCAAGTTCCAACCGTTGACTATTTTAGCTTAGGTTCTAGC
CCTACCTTGTCCATGTGACGATGATTGCAGGTTATGGGGTCCTCTCTCGG
CGTACTTGCAGCCTACTCGGCAGGGGAAGGGACCCAGCCCCTCCGACGAC
TGGTCTACCTTCTGCTGCTCAGCGTGGGGGCAGCCGCAGTGACAACCGCA
GCATGTAGCTGGCTAGCGGGCGATGTCGTCCACAATGTGAGAGCGAATGC
AGCAGAATGATGCTCGTCGTTGTTGAGAACGTGTGGACGAACTCTTTGTG
TTCCAATCAAGACGGCATTTACCGTTGTTTTTTATGCATAGATCACACGC
ATCGTCGTCCATGTGAACGTTAAGTGCCGTCGTTTCTTGAATCGACCAAC
GGTTGTGTGCTTGGTGCCCAGGGCGGGAGCGTTGGCATCATGGTGCTGGC
AACAGTGGCGTCGCTAGGCTCGACGGCGGTCTTCACCATTGAAAAGCACA
ACATGCTGATCACACGAGCAGCCACGACTGCGGCATTCGATGACCGCGAG
CGACACGAAGGATTGTCACATCTCCACGAGGAGTCCTTGATGGATATCAA
GGCGATCTGAAATGTACGACATCAAGTGGTGTGGTTAAAAGCGTTTGAAA
TCAGTAGTTCTACGGTGGTTCCTTGTAAATGTTTGTACAGAGCCGAAGTG
TTTAAGGATCAGAGCGTAGGTGATAAAGGTCAATACGGTCAGGCAACGTT
GGAAGGCTTGGTGTGTGCTGGTATGATCTGGTATGTTGAGAACGAAGGTC
TTGCTGTTGGAGTGTGGAAGTTTGTCGTCGAAGGGCCCTCTCACGACACG
AGGTTTGGGGGACCCCTCGCAAAACGCCACCATTGGCGCAGATTTGTTCT
CGCACTCTAGCTGCCGTGCGGTGAGATCATGTGCGTCGGCTACGTGGGTT
GATTCCACCGCCGTGCCACCTGCTGCTTGTCTTGCGGCCCCCTAAAATCC
GGATGAAAGTTACACGCGCTGGTCGATATCGACGTGCGTGCACGGGCGGC
GCCGATTGATACCGCCCGGCC
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Coding sequence (CDS) from alignment at Scaffold_510:34302..36972-

>EsuBft98_23a-0001 ID=EsuBft98_23a-0001|Name=EsuBft98_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=495bp|location=Sequence derived from alignment at Scaffold_510:34302..36972- (Ectocarpus subulatus male Bft15b)
ATGGATGACCTACTTCAACCAACATGCTGGGCAGGCATGCAGGCGATGGG
AACCCTGCTGGGTACGATGTTTGGATTTGTGTCTGCTGCTCTTCTCACGC
CGATCCACGGCGGGGAGAGAGAGCACGGGTTGCCGGCTGCTCCTGGCGTG
GTTATGGGGTCCTCTCTCGGCGTACTTGCAGCCTACTCGGCAGGGGAAGG
GACCCAGCCCCTCCGACGACTGGTCTACCTTCTGCTGCTCAGCGTGGGGG
CAGCCGCAGTGACAACCGCAGCATGTAGCTGGCTAGCGGGCGATGTCGTC
CACAATGGCGGGAGCGTTGGCATCATGGTGCTGGCAACAGTGGCGTCGCT
AGGCTCGACGGCGGTCTTCACCATTGAAAAGCACAACATGCTGATCACAC
GAGCAGCCACGACTGCGGCATTCGATGACCGCGAGCGACACGAAGGATTG
TCACATCTCCACGAGGAGTCCTTGATGGATATCAAGGCGATCTGA
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