EsuBft98_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft98_22a-0001
Unique Name	EsuBft98_22a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_510	contig	Scaffold_510:68426..69679 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	28377.ENSACAP00000022069
ProteomeId	EsuBft98_22
Protein domains	PTHR25952
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	125
Hectar predicted targeting category	other localisation
Evalue	5.96e-10
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3A35Z@33154\|Opisthokonta,3BQYF@33208\|Metazoa,3D7GC@33213\|Bilateria,48EZY@7711\|Chordata,49BMJ@7742\|Vertebrata
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Ribonuclease H protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft98_22a	EsuBft98_22a	Ectocarpus subulatus male Bft15b	gene	Scaffold_510 68426..69679 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_22a-0001-exon	EsuBft98_22a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 68426..69679 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_22a-0001-exon	agat-three_prime_utr-23835	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_510 68426..68884 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_22a-0001-cds	EsuBft98_22a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_510 68885..69517 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_22a-0001-exon	agat-five_prime_utr-15541	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_510 69518..69679 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_22a-0001	EsuBft98_22	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_510 68885..69517 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_510:68426..69679-
coding sequence from alignment at Scaffold_510:68426..69679-

spliced messenger RNA

>EsuBft98_22a-0001 ID=EsuBft98_22a-0001|Name=EsuBft98_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1254bp|location=Sequence derived from alignment at Scaffold_510:68426..69679- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAGCTCAAGAT
CCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCT
CGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGC
CAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCG
CCCCCTGTCCTATGCCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCG
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTAATATGCGCATGGAGGAC
ACCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACC
TCGTGGCCTTCAACATGGGTGACGAAAAGGAAGGGGGTAAATGGAAAGTG
AGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGC
ATGGTTGATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGC
GCCAGCGCGCGAGGGATGCAGAAGCAGAGAGTATGGCCTCAGGACCGAAG
AGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGTGACCGGG
CACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACGTGTGGCGAACT
ATGTACCCGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCT
ATACTCCTTTGTGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGT
TTCCTTTTTTCATGACCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGA
TCTCGCTTTGTTGTTTCTGTTGCCTTTGTTTTTGTACGTCTGGCTGCCTG
CCCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGT
TGCGTAATGCCTGGTGCTGGTACGTTACCCTTTGATTATGGATTTTTTCT
TTGGGTGGGTGTGGGAAGCGTCCTCCTTTATTTTTGTTTTTGTTTTATTT
TGATCGGTTTCCGACGGCTCTTGTCTCGAACGGTCGGTGCGATACCTGTT
CTTT

protein sequence of EsuBft98_22a-0001

>EsuBft98_22 ID=EsuBft98_22|Name=EsuBft98_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MYDRRRANRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLT
RCIGWSKRKRSDRPLSYAQAGCEETIEATVRKRRLCFAGFNMRMEDTRLP
KRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKVSAKD
PEVWYNKVEDGAAWLMRKWHRQEAEASAKRQRARDAEAESMASGPKRKRA
GEAAVGGKKR

mRNA from alignment at Scaffold_510:68426..69679-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft98_22a-0001 ID=EsuBft98_22a-0001|Name=EsuBft98_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1254bp|location=Sequence derived from alignment at Scaffold_510:68426..69679- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGTGCTTCGATGTACGACAGGCGACGGGCCAACCGCCAGCTCAAGAT
CCGGCTACTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCT
CGTGGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGC
CAGTTCCTTACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCG
CCCCCTGTCCTATGCCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCG
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTAATATGCGCATGGAGGAC
ACCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACC
TCGTGGCCTTCAACATGGGTGACGAAAAGGAAGGGGGTAAATGGAAAGTG
AGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGC
ATGGTTGATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGC
GCCAGCGCGCGAGGGATGCAGAAGCAGAGAGTATGGCCTCAGGACCGAAG
AGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGGGAAGAAACGGTGACCGGG
CACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACGTGTGGCGAACT
ATGTACCCGGCTGATGTTGTTGCGCCCTGTTTCCCTCCCTGCTGTATGCT
ATACTCCTTTGTGTATGTCCTTTGTATTGCCTTCGGCCTCTGTGCTGTGT
TTCCTTTTTTCATGACCTCCCTGCCTACTCTGCTGTGTTGGGTACCTTGA
TCTCGCTTTGTTGTTTCTGTTGCCTTTGTTTTTGTACGTCTGGCTGCCTG
CCCATCTGCCGCCTCTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGT
TGCGTAATGCCTGGTGCTGGTACGTTACCCTTTGATTATGGATTTTTTCT
TTGGGTGGGTGTGGGAAGCGTCCTCCTTTATTTTTGTTTTTGTTTTATTT
TGATCGGTTTCCGACGGCTCTTGTCTCGAACGGTCGGTGCGATACCTGTT
CTTT

Coding sequence (CDS) from alignment at Scaffold_510:68426..69679-

>EsuBft98_22a-0001 ID=EsuBft98_22a-0001|Name=EsuBft98_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_510:68426..69679- (Ectocarpus subulatus male Bft15b)
ATGTACGACAGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCA
GGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAA
CAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAGTTCCTTACA
CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA
TGCCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGA
GACTGTGTTTCGCGGGCTTTAATATGCGCATGGAGGACACCCGCCTCCCC
AAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGGGCGG
GCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCA
ACATGGGTGACGAAAAGGAAGGGGGTAAATGGAAAGTGAGCGCCAAGGAC
CCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTGATGAG
GAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGA
GGGATGCAGAAGCAGAGAGTATGGCCTCAGGACCGAAGAGAAAGAGAGCC
GGGGAAGCGGCGGTGGGGGGGAAGAAACGGTGA