EsuBft98_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft98_20a-0001
Unique NameEsuBft98_20a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_510contigScaffold_510:98444..101050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft98_20
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length204
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003100.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft98_20aEsuBft98_20aEctocarpus subulatus male Bft15bgeneScaffold_510 98444..101050 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_20a-0001-exonagat-exon-75181Ectocarpus subulatus male Bft15bexonScaffold_510 98444..98774 -
EsuBft98_20a-0001-exonEsuBft98_20a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_510 99059..99207 -
EsuBft98_20a-0001-exonagat-exon-75180Ectocarpus subulatus male Bft15bexonScaffold_510 99482..101050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_20a-0001-cdsEsuBft98_20a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_510 98444..98774 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_20a-0001-exonagat-five_prime_utr-15540Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_510 100949..101050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft98_20a-0001EsuBft98_20Ectocarpus subulatus male Bft15bpolypeptideScaffold_510 98444..100948 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft98_20a-0001 ID=EsuBft98_20a-0001|Name=EsuBft98_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2049bp|location=Sequence derived from alignment at Scaffold_510:98444..101050- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCATCACAGCTGATCACCTCACGAGGCAGCAGGTGCGGTGCCCAGCAGG
TCCCCAGCGACGCTCCAGAGCACCACAGCACAACACACTCAAATCCACGG
CTATGTTGAGTTGGGACAGCGAGGAGTTCAACTTTGTCGGTCTTGCACGG
AGCCCTGTCAAGCGGACGCCCCGGACGTACCACGACGACGATGGCGCCGT
GATCAAGACCGAAGAGCCTTTCTCGCGCTCAACGACTGACCGCATGTCCA
CGGGGACTGCTCGCTCAGCCGGGTACTCCTCAGTTGGACCTGCAAGCAGC
GCTCGCCATCGCCAGGCTCTCCGCCCAATGGCCGAAAACAGCGTGTACAC
GCCCGCTCCTTCCGCGCTGGACAGCATGGTCAACATCATCTCGACCTCCA
TCTCCAGTAACAAGAAGGCCCTGACGGCAAGTCGATCCGGCCTACCCGTG
TCCCGCACGCTGAAGTTATCGCCTGCGGACACCACGCGCACCACGGCGGG
CGAGAAGAAAGAACAATCGGTGCTGGTGAGGGCGTACACGCCTGCAGCCG
CCGTCAGCAGGGGGCACCAGCGGCACGAGCAGCAGGAAGCGGTATCGCCG
GCCGGCAACATGCTGCACGGTGATCACACTCACCGCTCGATGACCCGGTC
TGCTCTCCTCTCCGCCCTGGATCACTCACCGTACACCCCCCAGCAACAGC
ACCAACAGCAAGGATCTCATGTTTCGCTAGACGACAGCTCGCCAAGAGCA
ACACAGGCCGGCAACAACGCGGCCTCCCCGTCTTTCTCCTCGGACATCCC
CACCGGGATCAAGAAAGCCTCATCCCCGTCTTCTCCGCAGGCCTACGCCC
AGCACCACGACCACGATGGCCCCTTGACACCGTCCTTCCTTGCGCCGGCC
GCGAGACTCGGCGAAGCGGGCTTTACGGACGACGACCGTAGCCGTACGTG
GTCCGAGTGCTCCTTCACCAACGCGGTGTTCTCTCCAGACCCCGTCACCC
CCGCCGTGGCGCGAGAGAGTCGAGGCGGCAACGACGGCGGCGGCGACGGC
GGCAACACCGCCGTGGGCAGCGGCGACAGAGGTGGGGTGTCCAGAGGTGA
GATGGCCAAAGGCGAAGAAGGCCATGGCGCCAGGGCGACGCCGACTCCGC
CGCAGAGAAGGACTAGCAGCCCGCCTGCGTCGGAGATCGCGTACACCCGC
GACCACACCGCTACCGCTCACACTGCGTGCACCCCGGCAGCCGTGTCGGC
ACTCGTGCGGATGGGCGGCCGCTCCGTGGCAGCGGAGACACCCGGGAGCG
GAACAGCTGCGAACAGGTACCGCGGTTTCATTGCGCAGAGCCCGATCGCG
CTATCCGCCACCGCGAAGAAAGAAGACCCCGAGGAGGGAGAGGCGGAGAT
GCCGAGCACCCCCGCCGCAGCGGCGACTCTCGCGGCAATGATGAAGGTCG
CTAGTGCTGGCGTGCATGGGTCTGATCCTGCTGCTGCTGAGGAACAGGGG
GTGATCATGGGCAAGAATCAGGACTCTACCTCTCAAGAAGCTTCAGGAGT
ACGGCCGAAGGATGTAAAGAACTTGCGCCAGCGGAGGACAGCGGCTCCCG
AGACACCATCCCGACGAGAGAGTATGAGTGCCGGGCTGCCGATAATAACC
CCAAGGCGCAGGAAGGCGGCGTCGCAGCTTCTCGACCTAAGCAAGGCAAC
CCCGAGGGGAATGATCAGGGGATTGCTGTCGAGCAACGGACATCCCGCCC
AGGCTTTGCAGAACAAGCACCAGGCGCACCAGCGCTTCGTGCCCCAGGTG
GCTAAGCTGGTGGAGAACGTTGAGGAGGAGACTCCGCGAGCGCTGCTGAA
AGGAGCTTGCGTTCGCGAAGACAACCGCTCTCGGTGGAAGTCCACATCCG
TTGCAGAAGCTGCCGCCGCTGCCGCTGCCGCCGCAGCTGCTACGGCGGCG
GCTGCTGTTGCCGCGGCGGGTTCCGCGGACGGGGCTGGCGGCTTCGTGGA
GGGTCGCGAGGCGGGCGAGATTAGTGCCGAGCTAGCCGCTGTGAGTTGA
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protein sequence of EsuBft98_20a-0001

>EsuBft98_20 ID=EsuBft98_20|Name=EsuBft98_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=648bp
MLSWDSEEFNFVGLARSPVKRTPRTYHDDDGAVIKTEEPFSRSTTDRMST
GTARSAGYSSVGPASSARHRQALRPMAENSVYTPAPSALDSMVNIISTSI
SSNKKALTASRSGLPVSRTLKLSPADTTRTTAGEKKEQSVLVRAYTPAAA
VSRGHQRHEQQEAVSPAGNMLHGDHTHRSMTRSALLSALDHSPYTPQQQH
QQQGSHVSLDDSSPRATQAGNNAASPSFSSDIPTGIKKASSPSSPQAYAQ
HHDHDGPLTPSFLAPAARLGEAGFTDDDRSRTWSECSFTNAVFSPDPVTP
AVARESRGGNDGGGDGGNTAVGSGDRGGVSRGEMAKGEEGHGARATPTPP
QRRTSSPPASEIAYTRDHTATAHTACTPAAVSALVRMGGRSVAAETPGSG
TAANRYRGFIAQSPIALSATAKKEDPEEGEAEMPSTPAAAATLAAMMKVA
SAGVHGSDPAAAEEQGVIMGKNQDSTSQEASGVRPKDVKNLRQRRTAAPE
TPSRRESMSAGLPIITPRRRKAASQLLDLSKATPRGMIRGLLSSNGHPAQ
ALQNKHQAHQRFVPQVAKLVENVEEETPRALLKGACVREDNRSRWKSTSV
AEAAAAAAAAAAATAAAAVAAAGSADGAGGFVEGREAGEISAELAAVS
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mRNA from alignment at Scaffold_510:98444..101050-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft98_20a-0001 ID=EsuBft98_20a-0001|Name=EsuBft98_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2607bp|location=Sequence derived from alignment at Scaffold_510:98444..101050- (Ectocarpus subulatus male Bft15b)
CCCATCACAGCTGATCACCTCACGAGGCAGCAGGTGCGGTGCCCAGCAGG
TCCCCAGCGACGCTCCAGAGCACCACAGCACAACACACTCAAATCCACGG
CTATGTTGAGTTGGGACAGCGAGGAGTTCAACTTTGTCGGTCTTGCACGG
AGCCCTGTCAAGCGGACGCCCCGGACGTACCACGACGACGATGGCGCCGT
GATCAAGACCGAAGAGCCTTTCTCGCGCTCAACGACTGACCGCATGTCCA
CGGGGACTGCTCGCTCAGCCGGGTACTCCTCAGTTGGACCTGCAAGCAGC
GCTCGCCATCGCCAGGCTCTCCGCCCAATGGCCGAAAACAGCGTGTACAC
GCCCGCTCCTTCCGCGCTGGACAGCATGGTCAACATCATCTCGACCTCCA
TCTCCAGTAACAAGAAGGCCCTGACGGCAAGTCGATCCGGCCTACCCGTG
TCCCGCACGCTGAAGTTATCGCCTGCGGACACCACGCGCACCACGGCGGG
CGAGAAGAAAGAACAATCGGTGCTGGTGAGGGCGTACACGCCTGCAGCCG
CCGTCAGCAGGGGGCACCAGCGGCACGAGCAGCAGGAAGCGGTATCGCCG
GCCGGCAACATGCTGCACGGTGATCACACTCACCGCTCGATGACCCGGTC
TGCTCTCCTCTCCGCCCTGGATCACTCACCGTACACCCCCCAGCAACAGC
ACCAACAGCAAGGATCTCATGTTTCGCTAGACGACAGCTCGCCAAGAGCA
ACACAGGCCGGCAACAACGCGGCCTCCCCGTCTTTCTCCTCGGACATCCC
CACCGGGATCAAGAAAGCCTCATCCCCGTCTTCTCCGCAGGCCTACGCCC
AGCACCACGACCACGATGGCCCCTTGACACCGTCCTTCCTTGCGCCGGCC
GCGAGACTCGGCGAAGCGGGCTTTACGGACGACGACCGTAGCCGTACGTG
GTCCGAGTGCTCCTTCACCAACGCGGTGTTCTCTCCAGACCCCGTCACCC
CCGCCGTGGCGCGAGAGAGTCGAGGCGGCAACGACGGCGGCGGCGACGGC
GGCAACACCGCCGTGGGCAGCGGCGACAGAGGTGGGGTGTCCAGAGGTGA
GATGGCCAAAGGCGAAGAAGGCCATGGCGCCAGGGCGACGCCGACTCCGC
CGCAGAGAAGGACTAGCAGCCCGCCTGCGTCGGAGATCGCGTACACCCGC
GACCACACCGCTACCGCTCACACTGCGTGCACCCCGGCAGCCGTGTCGGC
ACTCGTGCGGATGGGCGGCCGCTCCGTGGCAGCGGAGACACCCGGGAGCG
GAACAGCTGCGAACAGGTACCGCGGTTTCATTGCGCAGAGCCCGATCGCG
CTATCCGCCACCGCGAAGAAAGAAGACCCCGAGGAGGGAGAGGCGGAGAT
GCCGAGCACCCCCGCCGCAGCGGCGACTCTCGCGGCAATGATGAAGGTCG
CTAGTGCTGGCGTGCATGGGTCTGATCCTGCTGCTGCTGAGGAACAGGGG
GTGATCATGGGCAAGAATCAGGACTCTACCTCTCAAGAAGCTTCAGGAGT
ACGGCCGAAGGATGTAAAGGTGCGTTTTTTGAATTGTTCCGTATTCTCCG
CAGCCTACAAATTAGAATTAAGAAGACTTTTCGTTGCGCCGATTGACGGC
TCCGCAGGCGGTCCTGTCACAATGGGATGGACAGCAGTAGGTGCTCGAAG
TTCTCTTTCGGTCCTGAGCGTACAATCGCCCAAACAAAAACGCACTCTAC
AGCAGTAGCGACCGCATGCACTTGTTCGCTTGAAACGACGCAAGATTCAG
TGTAGAATTGGCTGATCGACGCCCGCGATGCTGAACAATGCAGAACTTGC
GCCAGCGGAGGACAGCGGCTCCCGAGACACCATCCCGACGAGAGAGTATG
AGTGCCGGGCTGCCGATAATAACCCCAAGGCGCAGGAAGGCGGCGTCGCA
GCTTCTCGACCTAAGCAAGGCAACCCCGAGGGGAATGATCAGGTATGTAC
CTTGTGGTGGCGTGTTTGACGGCAGAGGTAGAAGCGCAGCAGCGTGGCTT
CGTCTCTGTACATGTTGTCCTGTCTGTTTTATGAAGCAGAGCTTGCTTCG
TTTGCGGAGATTGAAATATGCCCGGTCGGTAGAGGCAACAGCGGTAGCGC
CCAAGTAGTTTGGTGGGTGGTGTCAGGACATGGCTTTGATCTCTTCTGTT
TTGAAATATGCTTCCAAGGTTGTTCAAACGAAACACTGCTCTGTGTGTGG
TCCCACCCTCGTCCGTGTTGGCGTAGGGGATTGCTGTCGAGCAACGGACA
TCCCGCCCAGGCTTTGCAGAACAAGCACCAGGCGCACCAGCGCTTCGTGC
CCCAGGTGGCTAAGCTGGTGGAGAACGTTGAGGAGGAGACTCCGCGAGCG
CTGCTGAAAGGAGCTTGCGTTCGCGAAGACAACCGCTCTCGGTGGAAGTC
CACATCCGTTGCAGAAGCTGCCGCCGCTGCCGCTGCCGCCGCAGCTGCTA
CGGCGGCGGCTGCTGTTGCCGCGGCGGGTTCCGCGGACGGGGCTGGCGGC
TTCGTGGAGGGTCGCGAGGCGGGCGAGATTAGTGCCGAGCTAGCCGCTGT
GAGTTGA
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Coding sequence (CDS) from alignment at Scaffold_510:98444..101050-

>EsuBft98_20a-0001 ID=EsuBft98_20a-0001|Name=EsuBft98_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1947bp|location=Sequence derived from alignment at Scaffold_510:98444..101050- (Ectocarpus subulatus male Bft15b)
ATGTTGAGTTGGGACAGCGAGGAGTTCAACTTTGTCGGTCTTGCACGGAG
CCCTGTCAAGCGGACGCCCCGGACGTACCACGACGACGATGGCGCCGTGA
TCAAGACCGAAGAGCCTTTCTCGCGCTCAACGACTGACCGCATGTCCACG
GGGACTGCTCGCTCAGCCGGGTACTCCTCAGTTGGACCTGCAAGCAGCGC
TCGCCATCGCCAGGCTCTCCGCCCAATGGCCGAAAACAGCGTGTACACGC
CCGCTCCTTCCGCGCTGGACAGCATGGTCAACATCATCTCGACCTCCATC
TCCAGTAACAAGAAGGCCCTGACGGCAAGTCGATCCGGCCTACCCGTGTC
CCGCACGCTGAAGTTATCGCCTGCGGACACCACGCGCACCACGGCGGGCG
AGAAGAAAGAACAATCGGTGCTGGTGAGGGCGTACACGCCTGCAGCCGCC
GTCAGCAGGGGGCACCAGCGGCACGAGCAGCAGGAAGCGGTATCGCCGGC
CGGCAACATGCTGCACGGTGATCACACTCACCGCTCGATGACCCGGTCTG
CTCTCCTCTCCGCCCTGGATCACTCACCGTACACCCCCCAGCAACAGCAC
CAACAGCAAGGATCTCATGTTTCGCTAGACGACAGCTCGCCAAGAGCAAC
ACAGGCCGGCAACAACGCGGCCTCCCCGTCTTTCTCCTCGGACATCCCCA
CCGGGATCAAGAAAGCCTCATCCCCGTCTTCTCCGCAGGCCTACGCCCAG
CACCACGACCACGATGGCCCCTTGACACCGTCCTTCCTTGCGCCGGCCGC
GAGACTCGGCGAAGCGGGCTTTACGGACGACGACCGTAGCCGTACGTGGT
CCGAGTGCTCCTTCACCAACGCGGTGTTCTCTCCAGACCCCGTCACCCCC
GCCGTGGCGCGAGAGAGTCGAGGCGGCAACGACGGCGGCGGCGACGGCGG
CAACACCGCCGTGGGCAGCGGCGACAGAGGTGGGGTGTCCAGAGGTGAGA
TGGCCAAAGGCGAAGAAGGCCATGGCGCCAGGGCGACGCCGACTCCGCCG
CAGAGAAGGACTAGCAGCCCGCCTGCGTCGGAGATCGCGTACACCCGCGA
CCACACCGCTACCGCTCACACTGCGTGCACCCCGGCAGCCGTGTCGGCAC
TCGTGCGGATGGGCGGCCGCTCCGTGGCAGCGGAGACACCCGGGAGCGGA
ACAGCTGCGAACAGGTACCGCGGTTTCATTGCGCAGAGCCCGATCGCGCT
ATCCGCCACCGCGAAGAAAGAAGACCCCGAGGAGGGAGAGGCGGAGATGC
CGAGCACCCCCGCCGCAGCGGCGACTCTCGCGGCAATGATGAAGGTCGCT
AGTGCTGGCGTGCATGGGTCTGATCCTGCTGCTGCTGAGGAACAGGGGGT
GATCATGGGCAAGAATCAGGACTCTACCTCTCAAGAAGCTTCAGGAGTAC
GGCCGAAGGATGTAAAGAACTTGCGCCAGCGGAGGACAGCGGCTCCCGAG
ACACCATCCCGACGAGAGAGTATGAGTGCCGGGCTGCCGATAATAACCCC
AAGGCGCAGGAAGGCGGCGTCGCAGCTTCTCGACCTAAGCAAGGCAACCC
CGAGGGGAATGATCAGGGGATTGCTGTCGAGCAACGGACATCCCGCCCAG
GCTTTGCAGAACAAGCACCAGGCGCACCAGCGCTTCGTGCCCCAGGTGGC
TAAGCTGGTGGAGAACGTTGAGGAGGAGACTCCGCGAGCGCTGCTGAAAG
GAGCTTGCGTTCGCGAAGACAACCGCTCTCGGTGGAAGTCCACATCCGTT
GCAGAAGCTGCCGCCGCTGCCGCTGCCGCCGCAGCTGCTACGGCGGCGGC
TGCTGTTGCCGCGGCGGGTTCCGCGGACGGGGCTGGCGGCTTCGTGGAGG
GTCGCGAGGCGGGCGAGATTAGTGCCGAGCTAGCCGCTGTGAGTTGA
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