EsuBft98_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft98_13a-0001
Unique Name	EsuBft98_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_510	contig	Scaffold_510:150842..154050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FI08
ProteomeId	EsuBft98_13
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	Coil
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	174
Evalue	2.51e-71
EggNOG OGs	2DCSR@1\|root,2S5KN@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft98_13a	EsuBft98_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_510 150842..154050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_13a-0001-exon	EsuBft98_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 150842..151136 +
EsuBft98_13a-0001-exon	agat-exon-75148	Ectocarpus subulatus male Bft15b	exon	Scaffold_510 152605..154050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_13a-0001-cds	EsuBft98_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_510 150842..151136 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_13a-0001-exon	agat-three_prime_utr-23829	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_510 153084..154050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft98_13a-0001	EsuBft98_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_510 150842..153083 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_510:150842..154050+
coding sequence from alignment at Scaffold_510:150842..154050+

spliced messenger RNA

>EsuBft98_13a-0001 ID=EsuBft98_13a-0001|Name=EsuBft98_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1741bp|location=Sequence derived from alignment at Scaffold_510:150842..154050+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGGAGGACAACCGATTCCCCAAGCGCATGCTGTTAGGAGTGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCCCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAACCAC
GGACGATTCAAGGAGTATCTTGCGAAGCACTGCAACACTCTCGCCTGGTA
TGGCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCG
GACGATTTCTCAAGTTGGAAGTCGGGAGGCAGATGGACATATGGCTCGAG
CAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGA
TCGGCGCGTCCTGATCACTCCATTGATGGGAGCGGCCATGGCAAGACTCA
ACAGCCAACAGGCCTACCGATACCGTCGTTTCGAAAAGTGCGGGATGGCC
ATGACCGTGGACGGCTCGGGCGATGATCGAATCAGCTTGGAGGGTTTGGA
CAAGCCGTATACCTTCGCTAACGATGAAGACAGTCGCGACGACGAACAAG
GTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGAT
GGAGGACGTGAGACGCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATTTGACCCA
AAATGGTATGGGCTGATAGCTGCGGGCCGTGGCTACACAGCGCATTTTGT
TGTACGCCGATTGGAGCCCTGTGGGCCAAGAAATGGAAGGTGTCGTATAT
AAGGAAGTACGACACCGGTGTCGTATATAACACTACTGAAC

protein sequence of EsuBft98_13a-0001

>EsuBft98_13 ID=EsuBft98_13|Name=EsuBft98_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=258bp
MRMEDNRFPKRMLLGVMAGGVGYRGGQESDWVSRLGEDPVAFNMGDEKEG
GKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEAENH
GRFKEYLAKHCNTLAWYGPSECTDEVQPVDAGAGRFLKLEVGRQMDIWLE
QSDNLERWETASLTASDRRVLITPLMGAAMARLNSQQAYRYRRFEKCGMA
MTVDGSGDDRISLEGLDKPYTFANDEDSRDDEQGSENGNDEPEGRAEEGD
GGRETLXX

mRNA from alignment at Scaffold_510:150842..154050+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft98_13a-0001 ID=EsuBft98_13a-0001|Name=EsuBft98_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3209bp|location=Sequence derived from alignment at Scaffold_510:150842..154050+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAACCGATTCCCCAAGCGCATGCTGTTAGGAGTGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCCCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACG
GCCATCTCGGGACCGAAGTGAAAGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACCGGGCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGG
CAGCACGTGTGGCGAACTATGTACCCGGCTGATGTTGTTGCGCCCTGTTT
CCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTTGTATGGCCT
TCGGCCTCTGCTGTTTTTCTTTTTTTCATGACCTTCCTGCCTACTCTGGT
ACCTTGATCTCGCTTCGCTGTTGCCCTTGTTTTTGTACGTCTGGCTGTGC
CCATCTGCCGCCTCTTTTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGG
TGCGTAGTGCCTGGTGCTGGTACGTTACCCTTTGATTTTTTCTTTGGGCC
GGTGTGGGAAGCGTCCTCCTTTACTTTTGTTTTTGTTTTATTTTGATCGG
TTTCCGAGGGCTCTTTTCTTGAACGGTCGGTGTGATACCTGTTCTTTTCT
TTGTTTCATTATGTTTTTTTTTTCGAGTGGTTTGTACCCTATTTTTGTTT
TGTTTTCCCGCGGCGTCGTATGTGCCGGAATTTGAGACCACGGGCTCCCC
ATTTTTTTGTGGACTATAGAGATAATGTGAGAAACAACAACAACAACAAC
AACAACACCTTACTGACCAACAGACCTAACGGGGAGGACAGATTCCCTCC
GACCACGTTATTATCTCAATCGATTTTAGACTAAAGAACGAATATGTTGC
CTATCCGAACTCCTGCTGAAGAGCTGTGTGTTGGCAACGAGGAAATTGTG
GAGATCTTCCAACGTCTGTCGAGCACGATTCCTTCTTGTATCACACAATT
ATTCAAAATATCTCGTGTGAAGTATGCAAAACCAAGATTAGCCGCACGTA
AAGGCAGAGCGGTTTACTTACAAAAGAAACGTCGAAATTCTATGTATAGT
CAAACCGTTAGTCAAGACAGGCCATTGTCCGATTCTAGATCCAAGTTTGC
CAGGAATTTCCAGGTTTGACTTTGGTTATCTTGTCATGATACAGTGCCGG
CCCGCACTTAAGAATATGGCACTTAAGAATTTGATGCTCAAAAAATCCAA
AACTTAAGAATTTATTTACCGATAAGAACACGTGCTCAGCTGCACGCCCT
GTTAGGAACAAGAACACACACCTGAGGTGCAAAACTGCTGCTACAAATAA
GAACGACAGCAATGCAGCGGCTGCCAGATAAGAATACTCGCAGGGAGAGG
GAGGGAAGAGGGGGGAGTGATCCCAGAGTATAGAGTATTGGGTTTGGGAG
GGGTACATACCCCTATCAACATTTGTTTTTTTTTAGAGGGGGAGGGTGGG
CATGGTGCGCACGCGTCGTGCCCCTGGGTGCCCCCGAGAAAAGCGTGATG
CGCGGGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTTATCATGGACAA
CTTGCACGCGCAGACCACGGACGATTCAAGGAGTATCTTGCGAAGCACTG
CAACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACGGACGAGGTGCAGC
CAGTTGATGCAGGAGCCGGACGATTTCTCAAGTTGGAAGTCGGGAGGCAG
ATGGACATATGGCTCGAGCAGTCGGACAACCTCGAGAGGTGGGAAACCGC
GTCGCTGACAGCTTCTGATCGGCGCGTCCTGATCACTCCATTGATGGGAG
CGGCCATGGCAAGACTCAACAGCCAACAGGCCTACCGATACCGTCGTTTC
GAAAAGTGCGGGATGGCCATGACCGTGGACGGCTCGGGCGATGATCGAAT
CAGCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACGATGAAGACA
GTCGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAGCCTGAGGGG
CGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNCGATTTGACCCAAAATGGTATGGGCTGATAGCTGCGGGCCGTGG
CTACACAGCGCATTTTGTTGTACGCCGATTGGAGCCCTGTGGGCCAAGAA
ATGGAAGGTGTCGTATATAAGGAAGTACGACACCGGTGTCGTATATAACA
CTACTGAAC

Coding sequence (CDS) from alignment at Scaffold_510:150842..154050+

>EsuBft98_13a-0001 ID=EsuBft98_13a-0001|Name=EsuBft98_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=774bp|location=Sequence derived from alignment at Scaffold_510:150842..154050+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGGAGGACAACCGATTCCCCAAGCGCATGCTGTTAGGAGTGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCCCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGCAGGAGGCGG
AAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAACCAC
GGACGATTCAAGGAGTATCTTGCGAAGCACTGCAACACTCTCGCCTGGTA
TGGCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCG
GACGATTTCTCAAGTTGGAAGTCGGGAGGCAGATGGACATATGGCTCGAG
CAGTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGA
TCGGCGCGTCCTGATCACTCCATTGATGGGAGCGGCCATGGCAAGACTCA
ACAGCCAACAGGCCTACCGATACCGTCGTTTCGAAAAGTGCGGGATGGCC
ATGACCGTGGACGGCTCGGGCGATGATCGAATCAGCTTGGAGGGTTTGGA
CAAGCCGTATACCTTCGCTAACGATGAAGACAGTCGCGACGACGAACAAG
GTTCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGAT
GGAGGACGTGAGACGCTCANNNNN