EsuBft986_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft986_8a-0001
Unique Name	EsuBft986_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_548	contig	Scaffold_548:92001..94641 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft986_8
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	224
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft986_8a	EsuBft986_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_548 92001..94641 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_8a-0001-exon	EsuBft986_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 92001..92050 +
EsuBft986_8a-0001-exon	agat-exon-55051	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 92446..94641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_8a-0001-cds	EsuBft986_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_548 92001..92050 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_8a-0001-exon	agat-three_prime_utr-23804	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_548 93746..94641 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_8a-0001	EsuBft986_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_548 92001..93745 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_548:92001..94641+
coding sequence from alignment at Scaffold_548:92001..94641+

spliced messenger RNA

>EsuBft986_8a-0001 ID=EsuBft986_8a-0001|Name=EsuBft986_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2246bp|location=Sequence derived from alignment at Scaffold_548:92001..94641+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACTACCTGCTCATCAGGCGTGATGTGAACCCAGCTTTCGATGG
GCTCGAACCTGGACAACCAGCGGGACAGCTCAAGTCCGGGCAGCAGTACA
ACGACCAGCTCTCTGCACTCTTAGACGAGTTGTGGATCGTCCGCTGCAAG
AATTTAGGGAAACCTAAAGATGTTGTCGACCTCGACGAAGAGCGCGATTA
CCTGCCGGCCCGCTCCTCGCAATCAAGCCCTGCTACCGTCAAGGAGGAGG
ACGGAGAGCCGGAGCTACCTTGCGGAGGAGGCTTGGAGGGAGAGGGCGCC
GACGGCACGCAGGAGGGTGCCGCCGGCGAGCCTGCACCGGGGGAGACGTC
GCCCGCGGAAGTGGAGGACACGAAGGATGGTTCATCAGAGGCGGGAGGCG
GTGGTGCGGTGGGGGCGGGGAGTGGTGCGGTGGAGGCGGGGAGCGGTGGA
GAGGCGGGGACGGGGAGCGACGATTCTTTGGGGCCCGAGCCAGAGGAAGG
TTCGCCGGACTACCCGCGATGGCTCGCCCGACAGGGGGCCATCAACGCGA
AACAAGCCGCTTCCGATGACGCGGTCAGCTCAAGTGGGGACGGCAACTTG
GGATACGGGCCGAGGCCCGCGAACTGGACGCACCCGCTCACCCTAACGTT
CTGCTTTTTCGGGAGGCCGGCTGGTGAACACGAAGACACGGAGCTCAACA
CGTGCGCAGCGAGCTCCGGGCCTCCGTCTCGCGGCAAGAAAAGGAAGGGG
GGCAAGGGCAAGGCCAAAGGTCCCGCCAGCGAAGGTGGGGGCAGCGGCGA
GGGATCCTCCGGCGAGGGATCCTTGACGGAGAATCCGTTGCACGCAGGCG
CTGTGAGGCAGTTTGTGGGGGCCGGGGAAGCGCAGAGCCGAGCAAAGGTG
AAGAAGGCTACACAGGAGGTAGAGCTGCGGCAGTCCCGTGATGCAGCGAG
GGCTCAGTTTCTGCGGCAGAACACGGAGCAACTGGAAGTGGCGAAGGAGA
TGCGCGATGCGGTGAAGCGAGTAGCCGACAACACTACCGCTCAGCGCGCG
CTGCAGGAAGAGGAGGCCTGCCGCAAGCGTAAGAAGCAGGCCATCGAAGA
CCTTGAGGGCGATCTACAATACTGCGAAAGCCACGAAGCTAAGGCCATCA
AGCTGAAGATTCGGGCTATGCGCAAGATGCCCGTCGGCCAGTTCACCGCT
GATTTCGTCTCAGGCGGCATCGACGACCTAGCGGGTCCCTCCGCTCCAGA
GGTTACCTCGGACGTACCCGCCTTGCCGGGCTTCTCGCTCAACAGCGAGA
CACCGGGGCCTGAAGGTGGTGGGGCTACGGCACAGCATCCCCAGGGTTAG
GCTTTCTCCGCGGGGAGGTCTACGGTGACAACTTGTTTAGAAAATTTAGC
GCGAGAAGCCCGCTTTGTCGTGCGGGGAAACATCCCTGGCGGGCGTATCT
GATTCGATGTTTTTTTCGTCGTGTGTTTCAGTTGGCGCTTGGAGGGATCA
CCCGTCCGTCGTCGGCCGTGTAGGACATGTAACTTTATTTGGCCGGAGCC
AAGTTAGCTCTCACAATCATTCCTTTTGAAGTTGTTCGTGCGCAGAGTTT
ATGTTCGACTTCGGGAGTCAAGCTTGAGGGCGCACGACTATGCAAATGTG
TTCTTGTGTGGCTTTCCGAGCTCCTTATGGTAAGCTGGCTAGTCCGGATA
CGCGGTCAATTGTAGGTGCCTCACCGTTTGGGTGGGGTCTACTTTTTTTC
TCCGGGATGGTTTGTAGATTCAGATATTTTCTTGAAACACTTTTTTATTT
TTTTCCGGCTTCATTGTTGTGCCGGCGCGAGGCCGAGATGCGCACGTATG
TAGCGCCTACACGGATCCCAAATTTGAGCACGTCTAATGAGGGATCTCAA
CGTGCGTCTTTCACGCCTTCAGACTGGGCGTGGATGCCTGTGAACGCTAG
GTTTATTCGTGATGTAGAGAGATTAGAGAGTAGAACGGTTCGTGGTGCTC
GCCCCCGAGGTCCCACACATGACGTTTCTTCGGTCCTTGCTAAGTTGAAA
CCTCATACACCGACACAGCAAACTTCGTGTTTAAAGACGCGAAAAAAGAT
GTATCCAATCACGCCCCTGCGCACCGGAAGTTTCAGTTTAAAATTGCTTT
GATGAAACTTCGAACACACCCGACATACTCATCATACTAACCAGAGCCGC
GTATTGACAGGTCGTGACCCTTCATGCACCCCCACCACCCCCCACC

protein sequence of EsuBft986_8a-0001

>EsuBft986_8 ID=EsuBft986_8|Name=EsuBft986_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=449bp
MEDYLLIRRDVNPAFDGLEPGQPAGQLKSGQQYNDQLSALLDELWIVRCK
NLGKPKDVVDLDEERDYLPARSSQSSPATVKEEDGEPELPCGGGLEGEGA
DGTQEGAAGEPAPGETSPAEVEDTKDGSSEAGGGGAVGAGSGAVEAGSGG
EAGTGSDDSLGPEPEEGSPDYPRWLARQGAINAKQAASDDAVSSSGDGNL
GYGPRPANWTHPLTLTFCFFGRPAGEHEDTELNTCAASSGPPSRGKKRKG
GKGKAKGPASEGGGSGEGSSGEGSLTENPLHAGAVRQFVGAGEAQSRAKV
KKATQEVELRQSRDAARAQFLRQNTEQLEVAKEMRDAVKRVADNTTAQRA
LQEEEACRKRKKQAIEDLEGDLQYCESHEAKAIKLKIRAMRKMPVGQFTA
DFVSGGIDDLAGPSAPEVTSDVPALPGFSLNSETPGPEGGGATAQHPQG

mRNA from alignment at Scaffold_548:92001..94641+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft986_8a-0001 ID=EsuBft986_8a-0001|Name=EsuBft986_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2641bp|location=Sequence derived from alignment at Scaffold_548:92001..94641+ (Ectocarpus subulatus male Bft15b)
ATGGAGGACTACCTGCTCATCAGGCGTGATGTGAACCCAGCTTTCGATGG
GTGAGTTTTAAGATAGTGCGAAGGCCCCACGAATCACGTATTTTTCAGGA
GCAAAGTTTGTGTTTTAAAATTATTTTATCGTTGGGGATTGAATGCGCCA
TACGTACCCTGTACTGGTAATTGTTTGCCCGCGTGTTATTTCTCCCAGGT
GTTAAGCGGTGCACCACGCATACAGCAGTACGGCGCTGTTCACGCCCAAT
GTCACGTGAAGCAGACAGAGACGCGAACCTTGCCCGCAAAAGTGACCGCA
TGTTTTTCTTCGACATGGAGAGCGTGGGACTTCTTGCGTGATGCCGAACA
AGTGCTTGCTTGCCCCGTGACGTCTCCCCCGTAATCCGCACATTCCTTTT
CCTTCTCTTCTCGTGCGCACCATTCTTGCACCCCTTGGAAATTAGGCTCG
AACCTGGACAACCAGCGGGACAGCTCAAGTCCGGGCAGCAGTACAACGAC
CAGCTCTCTGCACTCTTAGACGAGTTGTGGATCGTCCGCTGCAAGAATTT
AGGGAAACCTAAAGATGTTGTCGACCTCGACGAAGAGCGCGATTACCTGC
CGGCCCGCTCCTCGCAATCAAGCCCTGCTACCGTCAAGGAGGAGGACGGA
GAGCCGGAGCTACCTTGCGGAGGAGGCTTGGAGGGAGAGGGCGCCGACGG
CACGCAGGAGGGTGCCGCCGGCGAGCCTGCACCGGGGGAGACGTCGCCCG
CGGAAGTGGAGGACACGAAGGATGGTTCATCAGAGGCGGGAGGCGGTGGT
GCGGTGGGGGCGGGGAGTGGTGCGGTGGAGGCGGGGAGCGGTGGAGAGGC
GGGGACGGGGAGCGACGATTCTTTGGGGCCCGAGCCAGAGGAAGGTTCGC
CGGACTACCCGCGATGGCTCGCCCGACAGGGGGCCATCAACGCGAAACAA
GCCGCTTCCGATGACGCGGTCAGCTCAAGTGGGGACGGCAACTTGGGATA
CGGGCCGAGGCCCGCGAACTGGACGCACCCGCTCACCCTAACGTTCTGCT
TTTTCGGGAGGCCGGCTGGTGAACACGAAGACACGGAGCTCAACACGTGC
GCAGCGAGCTCCGGGCCTCCGTCTCGCGGCAAGAAAAGGAAGGGGGGCAA
GGGCAAGGCCAAAGGTCCCGCCAGCGAAGGTGGGGGCAGCGGCGAGGGAT
CCTCCGGCGAGGGATCCTTGACGGAGAATCCGTTGCACGCAGGCGCTGTG
AGGCAGTTTGTGGGGGCCGGGGAAGCGCAGAGCCGAGCAAAGGTGAAGAA
GGCTACACAGGAGGTAGAGCTGCGGCAGTCCCGTGATGCAGCGAGGGCTC
AGTTTCTGCGGCAGAACACGGAGCAACTGGAAGTGGCGAAGGAGATGCGC
GATGCGGTGAAGCGAGTAGCCGACAACACTACCGCTCAGCGCGCGCTGCA
GGAAGAGGAGGCCTGCCGCAAGCGTAAGAAGCAGGCCATCGAAGACCTTG
AGGGCGATCTACAATACTGCGAAAGCCACGAAGCTAAGGCCATCAAGCTG
AAGATTCGGGCTATGCGCAAGATGCCCGTCGGCCAGTTCACCGCTGATTT
CGTCTCAGGCGGCATCGACGACCTAGCGGGTCCCTCCGCTCCAGAGGTTA
CCTCGGACGTACCCGCCTTGCCGGGCTTCTCGCTCAACAGCGAGACACCG
GGGCCTGAAGGTGGTGGGGCTACGGCACAGCATCCCCAGGGTTAGGCTTT
CTCCGCGGGGAGGTCTACGGTGACAACTTGTTTAGAAAATTTAGCGCGAG
AAGCCCGCTTTGTCGTGCGGGGAAACATCCCTGGCGGGCGTATCTGATTC
GATGTTTTTTTCGTCGTGTGTTTCAGTTGGCGCTTGGAGGGATCACCCGT
CCGTCGTCGGCCGTGTAGGACATGTAACTTTATTTGGCCGGAGCCAAGTT
AGCTCTCACAATCATTCCTTTTGAAGTTGTTCGTGCGCAGAGTTTATGTT
CGACTTCGGGAGTCAAGCTTGAGGGCGCACGACTATGCAAATGTGTTCTT
GTGTGGCTTTCCGAGCTCCTTATGGTAAGCTGGCTAGTCCGGATACGCGG
TCAATTGTAGGTGCCTCACCGTTTGGGTGGGGTCTACTTTTTTTCTCCGG
GATGGTTTGTAGATTCAGATATTTTCTTGAAACACTTTTTTATTTTTTTC
CGGCTTCATTGTTGTGCCGGCGCGAGGCCGAGATGCGCACGTATGTAGCG
CCTACACGGATCCCAAATTTGAGCACGTCTAATGAGGGATCTCAACGTGC
GTCTTTCACGCCTTCAGACTGGGCGTGGATGCCTGTGAACGCTAGGTTTA
TTCGTGATGTAGAGAGATTAGAGAGTAGAACGGTTCGTGGTGCTCGCCCC
CGAGGTCCCACACATGACGTTTCTTCGGTCCTTGCTAAGTTGAAACCTCA
TACACCGACACAGCAAACTTCGTGTTTAAAGACGCGAAAAAAGATGTATC
CAATCACGCCCCTGCGCACCGGAAGTTTCAGTTTAAAATTGCTTTGATGA
AACTTCGAACACACCCGACATACTCATCATACTAACCAGAGCCGCGTATT
GACAGGTCGTGACCCTTCATGCACCCCCACCACCCCCCACC

Coding sequence (CDS) from alignment at Scaffold_548:92001..94641+

>EsuBft986_8a-0001 ID=EsuBft986_8a-0001|Name=EsuBft986_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1350bp|location=Sequence derived from alignment at Scaffold_548:92001..94641+ (Ectocarpus subulatus male Bft15b)
ATGGAGGACTACCTGCTCATCAGGCGTGATGTGAACCCAGCTTTCGATGG
GCTCGAACCTGGACAACCAGCGGGACAGCTCAAGTCCGGGCAGCAGTACA
ACGACCAGCTCTCTGCACTCTTAGACGAGTTGTGGATCGTCCGCTGCAAG
AATTTAGGGAAACCTAAAGATGTTGTCGACCTCGACGAAGAGCGCGATTA
CCTGCCGGCCCGCTCCTCGCAATCAAGCCCTGCTACCGTCAAGGAGGAGG
ACGGAGAGCCGGAGCTACCTTGCGGAGGAGGCTTGGAGGGAGAGGGCGCC
GACGGCACGCAGGAGGGTGCCGCCGGCGAGCCTGCACCGGGGGAGACGTC
GCCCGCGGAAGTGGAGGACACGAAGGATGGTTCATCAGAGGCGGGAGGCG
GTGGTGCGGTGGGGGCGGGGAGTGGTGCGGTGGAGGCGGGGAGCGGTGGA
GAGGCGGGGACGGGGAGCGACGATTCTTTGGGGCCCGAGCCAGAGGAAGG
TTCGCCGGACTACCCGCGATGGCTCGCCCGACAGGGGGCCATCAACGCGA
AACAAGCCGCTTCCGATGACGCGGTCAGCTCAAGTGGGGACGGCAACTTG
GGATACGGGCCGAGGCCCGCGAACTGGACGCACCCGCTCACCCTAACGTT
CTGCTTTTTCGGGAGGCCGGCTGGTGAACACGAAGACACGGAGCTCAACA
CGTGCGCAGCGAGCTCCGGGCCTCCGTCTCGCGGCAAGAAAAGGAAGGGG
GGCAAGGGCAAGGCCAAAGGTCCCGCCAGCGAAGGTGGGGGCAGCGGCGA
GGGATCCTCCGGCGAGGGATCCTTGACGGAGAATCCGTTGCACGCAGGCG
CTGTGAGGCAGTTTGTGGGGGCCGGGGAAGCGCAGAGCCGAGCAAAGGTG
AAGAAGGCTACACAGGAGGTAGAGCTGCGGCAGTCCCGTGATGCAGCGAG
GGCTCAGTTTCTGCGGCAGAACACGGAGCAACTGGAAGTGGCGAAGGAGA
TGCGCGATGCGGTGAAGCGAGTAGCCGACAACACTACCGCTCAGCGCGCG
CTGCAGGAAGAGGAGGCCTGCCGCAAGCGTAAGAAGCAGGCCATCGAAGA
CCTTGAGGGCGATCTACAATACTGCGAAAGCCACGAAGCTAAGGCCATCA
AGCTGAAGATTCGGGCTATGCGCAAGATGCCCGTCGGCCAGTTCACCGCT
GATTTCGTCTCAGGCGGCATCGACGACCTAGCGGGTCCCTCCGCTCCAGA
GGTTACCTCGGACGTACCCGCCTTGCCGGGCTTCTCGCTCAACAGCGAGA
CACCGGGGCCTGAAGGTGGTGGGGCTACGGCACAGCATCCCCAGGGTTAG