Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft986_5 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | TMhelix |
| Protein domains | TRANSMEMBRANE |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 91 |
| Hectar predicted targeting category | signal anchor |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft986_5a-0001 ID=EsuBft986_5a-0001|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_548:110765..111675+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTTGTGTTTCCCGTCTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGCT
CCGACGGCCGCCGCCGCCACAGCCGCAGCTTGAGCTATCGTCCCCCCTGT
AACGGCACCTGCCGTGCCTCCTGCCGCAGCTGTTGGTCGAATTTCAGCAC
AGGGACTAGAACTTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGT
AACGCCGCCGCCCCAGCCGCTAGTAGCGGTGACGGTGGTCGAGGAACAGG
TGCGGTAGATGGTGGTGGGCTTGCTGACGTCACTTCTGCTGTTGCCGCTT
GTATTGCTGTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGTGGCATT
CCTGCAGTTACTGTTGCAGCTGGTTCTACTGTCCCTCCTGCTTCCGGCCC
CTCTGTTGCTGCAACTACCTCTGATGCCGCTGCTCCTACGGGACGTTCTC
TACGAGCTTTCCCCTTGCATTTCCCCTTAGAAGACGGCGACTGGGTTGAA
GCGGTTGAGGAGTTATTTGATGCCCCACGAACGACGTGTACTGCCTGGCT
CGTACTGCCTCTTCCGACGTCAGATATCGTCGTCGGTGTACTCCTCTCAC
CCGCACTTTCCTCGTCGTTGCCCATGTTGTCTTCGTTCGTAGCACCTTCG
CAACTGACTCGCTGACGCTTCCGTGTTGTTGTGTCTGCCCATCCCGTGAC
CGTACGGAAAGCTGCTGCCTGCCGTGATCGCTTTTCCTCGTCGCTCTTTT
CTCTGCGTTTGATTTCGTCCCCGGCATTTTTGCTCCAGCCGCAAGCCGCA
GGCGTTGATCCTTTCCTGCGACCCATGGTTCATCCTCTGTGGTGCTGTGC
GTGTGCTGTGGGTTGTACGTGTGTGTGCTGCGGTGAGAGAGCTGTGTCCT
TTCTCTTTGCG back to topprotein sequence of EsuBft986_5a-0001 >EsuBft986_5 ID=EsuBft986_5|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MVVGLLTSLLLLPLVLLLPLLVMLLLVLVAFLQLLLQLVLLSLLLPAPLL
LQLPLMPLLLRDVLYELSPCISP back to topmRNA from alignment at Scaffold_548:110765..111675+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft986_5a-0001 ID=EsuBft986_5a-0001|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=911bp|location=Sequence derived from alignment at Scaffold_548:110765..111675+ (Ectocarpus subulatus male Bft15b)
CTTGTGTTTCCCGTCTAGCTCTGCCACTGCCTTGACCTATGCTTGCTGCT
CCGACGGCCGCCGCCGCCACAGCCGCAGCTTGAGCTATCGTCCCCCCTGT
AACGGCACCTGCCGTGCCTCCTGCCGCAGCTGTTGGTCGAATTTCAGCAC
AGGGACTAGAACTTGCAGTGCCGCCTCGTCCTCGTCTTTGTTCCCCTTGT
AACGCCGCCGCCCCAGCCGCTAGTAGCGGTGACGGTGGTCGAGGAACAGG
TGCGGTAGATGGTGGTGGGCTTGCTGACGTCACTTCTGCTGTTGCCGCTT
GTATTGCTGTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGTGGCATT
CCTGCAGTTACTGTTGCAGCTGGTTCTACTGTCCCTCCTGCTTCCGGCCC
CTCTGTTGCTGCAACTACCTCTGATGCCGCTGCTCCTACGGGACGTTCTC
TACGAGCTTTCCCCTTGCATTTCCCCTTAGAAGACGGCGACTGGGTTGAA
GCGGTTGAGGAGTTATTTGATGCCCCACGAACGACGTGTACTGCCTGGCT
CGTACTGCCTCTTCCGACGTCAGATATCGTCGTCGGTGTACTCCTCTCAC
CCGCACTTTCCTCGTCGTTGCCCATGTTGTCTTCGTTCGTAGCACCTTCG
CAACTGACTCGCTGACGCTTCCGTGTTGTTGTGTCTGCCCATCCCGTGAC
CGTACGGAAAGCTGCTGCCTGCCGTGATCGCTTTTCCTCGTCGCTCTTTT
CTCTGCGTTTGATTTCGTCCCCGGCATTTTTGCTCCAGCCGCAAGCCGCA
GGCGTTGATCCTTTCCTGCGACCCATGGTTCATCCTCTGTGGTGCTGTGC
GTGTGCTGTGGGTTGTACGTGTGTGTGCTGCGGTGAGAGAGCTGTGTCCT
TTCTCTTTGCG back to topCoding sequence (CDS) from alignment at Scaffold_548:110765..111675+ >EsuBft986_5a-0001 ID=EsuBft986_5a-0001|Name=EsuBft986_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_548:110765..111675+ (Ectocarpus subulatus male Bft15b)
ATGGTGGTGGGCTTGCTGACGTCACTTCTGCTGTTGCCGCTTGTATTGCT
GTTGCCGCTGCTGGTGATGTTGCTGTTGGTGCTTGTGGCATTCCTGCAGT
TACTGTTGCAGCTGGTTCTACTGTCCCTCCTGCTTCCGGCCCCTCTGTTG
CTGCAACTACCTCTGATGCCGCTGCTCCTACGGGACGTTCTCTACGAGCT
TTCCCCTTGCATTTCCCCTTAG back to top
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