EsuBft986_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft986_2a-0001
Unique Name	EsuBft986_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_548	contig	Scaffold_548:137712..140175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	67593.Physo139458
ProteomeId	EsuBft986_2
Protein domains	Coil
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	copia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	4776\|Peronosporales
Length	2235
Evalue	4.2e-40
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3QH4V@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	GAG-pre-integrase domain
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0005515
EC	3.1
GO	0003824
GO	0097159
GO	1901363
GO	0004518
GO	0090304
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft986_2a	EsuBft986_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_548 137712..140175 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_2a-0001-exon	agat-exon-55029	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 137712..137969 -
EsuBft986_2a-0001-exon	agat-exon-55028	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 138140..138789 -
EsuBft986_2a-0001-exon	EsuBft986_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_548 138849..140175 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_2a-0001-cds	EsuBft986_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_548 137712..137969 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft986_2a-0001	EsuBft986_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_548 137712..140175 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_548:137712..140175-
coding sequence from alignment at Scaffold_548:137712..140175-

spliced messenger RNA

>EsuBft986_2a-0001 ID=EsuBft986_2a-0001|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2235bp|location=Sequence derived from alignment at Scaffold_548:137712..140175- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAACCGAATCTGGAACAGTAATCGTCACCCGAAATTTCACCTGTCG
CCAAGTGCCCGCTGCTTCGCCCGGCCCCCTGCAGCCAGTGCCTCTCGCAG
ATGATGAGGAGGGCGGGGAGGGCGAGAGCAATGAGGGTGCGTCACGTCAA
GGTGGAGGGGGGCAAGAAGACCCGAGGAGTGAGTCCGACCTCGACGTAGA
CGACGCTCGTGGACTGGGGCAAGCGACTCCGCTCGTGCGCATGGGGGCGC
CTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGGAGGTCCCCCG
TCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATGACCCCGCCGA
CAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGACGTCTCCAACA
ACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGATGAG
AGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCTCCA
ACAACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGAT
GAGAGCAGCAGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCCACGACGG
CAGCAACGACGACGGTGACGACAGCGAGGCCGTCGACCCCGGCAGCGATG
ACGATGGCGGCGGCGAGACAAGCGACCCCGGTGAGAACGATGGTGACGGC
GATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACGACCCCGC
CGACAGCTGCTTCCCGTCAGGAATGGAAGGGAAGACACTTCTTTGGGGAG
CGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCGCACCCGG
AAGCAGACCCGGGAATTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGCGCC
AGCCCCCGAGGAGGCGCTGTTATCAACCATCCTGGAGACCGAAAACAGTC
CGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGAGCGCATG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCGGTTACAGTACGA
TCTAGTTAAGGCGCTCCATCTTGATGCAGGGGAGCTGAAGCTGGCATTCA
ATGCAAACGAAAAGGACGACGGGTCTCCGCAACCACTCCTTGACCCAGAG
CAAAGTATTCCCTCGCCAATCGGGCAGAAGCCTGACGATGAAGAGGCTGT
CCCGCTCAAATACAAAGATGCGATGGATTCCAAGTACAAGGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAAGGGTGTGAGTTCGAAGTGGGTGTTTTCG
CACAAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGCCCATATGGT
TGCGCGTGGTTTCTCACAAATTCCGGGGGTAGATTTCCACCACTCAGCTT
CTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTCGTAGCCACC
GAGAACAAACAGAAGATGTTCCACTGGGACATTAAACAAGCGTACATTCA
CGCTACGCTCAAAGAAGAGTTTTTTATCAGGCTTCCCCAGGGTTGTGGTG
ACATGTCTGGCAAGGTGTGCAATGTTGAGCGTGCACTGTATGGCCTGAAA
CAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATGCCCTCATCGCGAA
TGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTG
GCGCAGAGGTCGTAGGGCTGATCGTGATCTACGTAGACGACATTTTGTTG
GTGGCGTCCGAGCAAGAGCGTCAAGAGGTGCTTGCTTCCCTCCAGAAGAA
GTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGGATTGGCA
TTGAGATGGACCTAGAGAACGGCATCGCCAAGTTGTCCCAGACGGCATAC
ATCGGGAGCATCATCAAGTGGTTTAACCGCCTGACGAGTGGGGCGAAGAT
CAAGGTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCT
TCAGCTCGGCGACAAGCAAGCACATCGACGTGCGGTACCACTTTATCCGC
GAGCTCTTCAAGTCGGGGAAGATCACCGCAGAGTATGTCCCCACGGAAGA
GCAGTACGCCGACATGCTGACCAAGGTCCTTGGTAGGACCAAACTGGAGT
ACCACCGGAAGGCCCTGATGAACTTCCCGGAGTAG

protein sequence of EsuBft986_2a-0001

>EsuBft986_2 ID=EsuBft986_2|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=744bp
MLTESGTVIVTRNFTCRQVPAASPGPLQPVPLADDEEGGEGESNEGASRQ
GGGGQEDPRSESDLDVDDARGLGQATPLVRMGAPAAPGNGMQGDEGGGPP
SPSSGGGDFGGGDDPADNSSNSNDSSGPSDVSNNHDGGDSEPLSGDSGDE
SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSNNHDGGDSEPLSGDSGD
ESSSGSEPVSSTSSHDGSNDDGDDSEAVDPGSDDDGGGETSDPGENDGDG
DEGGDPETLEELKYDPADSCFPSGMEGKTLLWGASSAGQLRHVLQPGRTR
KQTRELRSSEEEPSEAPAPEEALLSTILETENSPEIVAEYIRESLLEERM
QDEQAHREELKKRLQYDLVKALHLDAGELKLAFNANEKDDGSPQPLLDPE
QSIPSPIGQKPDDEEAVPLKYKDAMDSKYKVFWEAAMMKEKGVSSKWVFS
HKTNEKGMITAFKAHMVARGFSQIPGVDFHHSASACPSTTSIKTVVVVAT
ENKQKMFHWDIKQAYIHATLKEEFFIRLPQGCGDMSGKVCNVERALYGLK
QSGREWGFEAADALIANGYEQCRADPCVFRRMVGAEVVGLIVIYVDDILL
VASEQERQEVLASLQKKFPVKDLGECTWYDGIGIEMDLENGIAKLSQTAY
IGSIIKWFNRLTSGAKIKVLEDNKGALALVQNPFSSATSKHIDVRYHFIR
ELFKSGKITAEYVPTEEQYADMLTKVLGRTKLEYHRKALMNFPE

mRNA from alignment at Scaffold_548:137712..140175-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft986_2a-0001 ID=EsuBft986_2a-0001|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2464bp|location=Sequence derived from alignment at Scaffold_548:137712..140175- (Ectocarpus subulatus male Bft15b)
ATGCTAACCGAATCTGGAACAGTAATCGTCACCCGAAATTTCACCTGTCG
CCAAGTGCCCGCTGCTTCGCCCGGCCCCCTGCAGCCAGTGCCTCTCGCAG
ATGATGAGGAGGGCGGGGAGGGCGAGAGCAATGAGGGTGCGTCACGTCAA
GGTGGAGGGGGGCAAGAAGACCCGAGGAGTGAGTCCGACCTCGACGTAGA
CGACGCTCGTGGACTGGGGCAAGCGACTCCGCTCGTGCGCATGGGGGCGC
CTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGGAGGTCCCCCG
TCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATGACCCCGCCGA
CAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGACGTCTCCAACA
ACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGATGAG
AGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCTCCA
ACAACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGAT
GAGAGCAGCAGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCCACGACGG
CAGCAACGACGACGGTGACGACAGCGAGGCCGTCGACCCCGGCAGCGATG
ACGATGGCGGCGGCGAGACAAGCGACCCCGGTGAGAACGATGGTGACGGC
GATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACGACCCCGC
CGACAGCTGCTTCCCGTCAGGAATGGAAGGGAAGACACTTCTTTGGGGAG
CGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCGCACCCGG
AAGCAGACCCGGGAATTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGCGCC
AGCCCCCGAGGAGGCGCTGTTATCAACCATCCTGGAGACCGAAAACAGTC
CGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGAGCGCATG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCGGTTACAGTACGA
TCTAGTTAAGGCGCTCCATCTTGATGCAGGGGAGCTGAAGCTGGCATTCA
ATGCAAACGAAAAGGACGACGGGTCTCCGCAACCACTCCTTGACCCAGAG
CAAAGTATTCCCTCGCCAATCGGGCAGAAGCCTGACGATGAAGAGGCTGT
CCCGCTCAAATACAAAGATGCGATGGATTCCAAGTACAAGGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAAGGGTGGTCTAGACAAGGCGGGACTTTCA
CGAAAATTGGCAAACTTCCCGAGGGGCGGAAGGCAGTGAGTTCGAAGTGG
GTGTTTTCGCACAAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGC
CCATATGGTTGCGCGTGGTTTCTCACAAATTCCGGGGGTAGATTTCCACC
ACTCAGCTTCTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTC
GTAGCCACCGAGAACAAACAGAAGATGTTCCACTGGGACATTAAACAAGC
GTACATTCACGCTACGCTCAAAGAAGAGTTTTTTATCAGGCTTCCCCAGG
GTTGTGGTGACATGTCTGGCAAGGTGTGCAATGTTGAGCGTGCACTGTAT
GGCCTGAAACAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATGCCCT
CATCGCGAATGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTA
GGATGGTTGGCGCAGAGGTCGTAGGGCTGATCGTGATCTACGTAGACGAC
ATTTTGTTGGTGGCGTCCGAGCAAGAGCGTCAAGAGGTGCTTGCTTCCCT
CCAGAAGAAGTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATG
GGATTGGCATTGAGATGGACCTAGAGAACGGCATCGCCAAGTTGTCCCAG
ACGGCATACATCGGGAGCATCATCAAGTGGTTTAACGTGACTACTACCGC
CCCCACGCCTGCTGTCCCCGGCGCTGACCNGCGCAGAGGTCGTAGGGCTG
ATCGTGATCTACGTAGACGACATTTTGTTGGTGGCGTCCGAGCAAGAGAC
AGCCGGGGAGGGAGTGAAGGAGGCGTTGCATGTGCGTGCGGTTCTGTCAT
TCGTAGCGCCTGACGAGTGGGGCGAAGATCAAGGTCCTTGAAGACAACAA
GGGAGCTCTTGCCCTGGTGCAGAACCCCTTCAGCTCGGCGACAAGCAAGC
ACATCGACGTGCGGTACCACTTTATCCGCGAGCTCTTCAAGTCGGGGAAG
ATCACCGCAGAGTATGTCCCCACGGAAGAGCAGTACGCCGACATGCTGAC
CAAGGTCCTTGGTAGGACCAAACTGGAGTACCACCGGAAGGCCCTGATGA
ACTTCCCGGAGTAG

Coding sequence (CDS) from alignment at Scaffold_548:137712..140175-

>EsuBft986_2a-0001 ID=EsuBft986_2a-0001|Name=EsuBft986_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2235bp|location=Sequence derived from alignment at Scaffold_548:137712..140175- (Ectocarpus subulatus male Bft15b)
ATGCTAACCGAATCTGGAACAGTAATCGTCACCCGAAATTTCACCTGTCG
CCAAGTGCCCGCTGCTTCGCCCGGCCCCCTGCAGCCAGTGCCTCTCGCAG
ATGATGAGGAGGGCGGGGAGGGCGAGAGCAATGAGGGTGCGTCACGTCAA
GGTGGAGGGGGGCAAGAAGACCCGAGGAGTGAGTCCGACCTCGACGTAGA
CGACGCTCGTGGACTGGGGCAAGCGACTCCGCTCGTGCGCATGGGGGCGC
CTGCGGCACCCGGAAATGGGATGCAGGGGGACGAAGGCGGAGGTCCCCCG
TCGCCCTCTTCGGGAGGGGGTGACTTCGGCGGTGGCGATGACCCCGCCGA
CAACAGCAGCAACAGCAACGACAGTAGTGGCCCCAGCGACGTCTCCAACA
ACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGATGAG
AGCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCTCCA
ACAACCACGACGGAGGCGACAGCGAGCCACTCAGCGGCGACTCTGGTGAT
GAGAGCAGCAGCGGGAGCGAGCCCGTCAGCAGCACATCTAGCCACGACGG
CAGCAACGACGACGGTGACGACAGCGAGGCCGTCGACCCCGGCAGCGATG
ACGATGGCGGCGGCGAGACAAGCGACCCCGGTGAGAACGATGGTGACGGC
GATGAAGGCGGCGACCCTGAGACGCTCGAGGAGTTGAAGTACGACCCCGC
CGACAGCTGCTTCCCGTCAGGAATGGAAGGGAAGACACTTCTTTGGGGAG
CGTCGAGCGCCGGCCAGCTGCGCCATGTGCTCCAGCCCGGCCGCACCCGG
AAGCAGACCCGGGAATTGCGGAGCTCCGAGGAAGAGCCGAGCGAGGCGCC
AGCCCCCGAGGAGGCGCTGTTATCAACCATCCTGGAGACCGAAAACAGTC
CGGAGATCGTTGCGGAATATATCCGCGAATCGCTGTTGGAGGAGCGCATG
CAAGACGAGCAAGCGCACCGTGAGGAGCTGAAGAAGCGGTTACAGTACGA
TCTAGTTAAGGCGCTCCATCTTGATGCAGGGGAGCTGAAGCTGGCATTCA
ATGCAAACGAAAAGGACGACGGGTCTCCGCAACCACTCCTTGACCCAGAG
CAAAGTATTCCCTCGCCAATCGGGCAGAAGCCTGACGATGAAGAGGCTGT
CCCGCTCAAATACAAAGATGCGATGGATTCCAAGTACAAGGTGTTTTGGG
AAGCGGCGATGATGAAAGAGAAGGGTGTGAGTTCGAAGTGGGTGTTTTCG
CACAAGACGAACGAGAAGGGTATGATCACCGCCTTCAAAGCCCATATGGT
TGCGCGTGGTTTCTCACAAATTCCGGGGGTAGATTTCCACCACTCAGCTT
CTGCATGCCCGTCTACGACGTCCATCAAAACCGTGGTTGTCGTAGCCACC
GAGAACAAACAGAAGATGTTCCACTGGGACATTAAACAAGCGTACATTCA
CGCTACGCTCAAAGAAGAGTTTTTTATCAGGCTTCCCCAGGGTTGTGGTG
ACATGTCTGGCAAGGTGTGCAATGTTGAGCGTGCACTGTATGGCCTGAAA
CAAAGCGGTCGCGAGTGGGGGTTTGAAGCTGCTGATGCCCTCATCGCGAA
TGGGTACGAGCAGTGCAGGGCTGACCCGTGTGTTTTCCGTAGGATGGTTG
GCGCAGAGGTCGTAGGGCTGATCGTGATCTACGTAGACGACATTTTGTTG
GTGGCGTCCGAGCAAGAGCGTCAAGAGGTGCTTGCTTCCCTCCAGAAGAA
GTTTCCGGTGAAGGATTTGGGAGAATGCACGTGGTATGATGGGATTGGCA
TTGAGATGGACCTAGAGAACGGCATCGCCAAGTTGTCCCAGACGGCATAC
ATCGGGAGCATCATCAAGTGGTTTAACCGCCTGACGAGTGGGGCGAAGAT
CAAGGTCCTTGAAGACAACAAGGGAGCTCTTGCCCTGGTGCAGAACCCCT
TCAGCTCGGCGACAAGCAAGCACATCGACGTGCGGTACCACTTTATCCGC
GAGCTCTTCAAGTCGGGGAAGATCACCGCAGAGTATGTCCCCACGGAAGA
GCAGTACGCCGACATGCTGACCAAGGTCCTTGGTAGGACCAAACTGGAGT
ACCACCGGAAGGCCCTGATGAACTTCCCGGAGTAG