EsuBft986_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft986_12a-0001
Unique NameEsuBft986_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_548contigScaffold_548:74814..76641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft986_12
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length91
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRGS domain
Ec32 orthologEc-12_002740.2
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft986_12aEsuBft986_12aEctocarpus subulatus male Bft15bgeneScaffold_548 74814..76641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_12a-0001-exonEsuBft986_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_548 74814..75359 -
EsuBft986_12a-0001-exonagat-exon-55064Ectocarpus subulatus male Bft15bexonScaffold_548 76272..76641 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_12a-0001-exonagat-three_prime_utr-23793Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_548 74814..75249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_12a-0001-cdsEsuBft986_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_548 75250..75359 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_12a-0001-exonagat-five_prime_utr-15508Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_548 76450..76641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft986_12a-0001EsuBft986_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_548 75250..76449 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft986_12a-0001 ID=EsuBft986_12a-0001|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=916bp|location=Sequence derived from alignment at Scaffold_548:74814..76641- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACCGGTGGTGAGGATGTGAGGATCTACCCATCACCGCGCGCTCCCACA
CTAAATTACAACCATTGTTCGCCCCTCGCCCCAAGTTTCGGCGGCACGCT
GCGCTTCCTCCGCAGCTTGCACCCCAGCGCCCACCAGGCTCAAAGCACAG
GGGGGAGACACAGGAGAAGGGACACCGGACCAATCATGGCCGATGGCCCA
CCCACTTCGATCGATATCGATGGATCTAGCAGCCGTGGCGCCGGTGGTCC
ACCTTCCTAGATTTGACGTCGGAGGAGGCACCGGATCGTCCAGCTATTGG
GAGCAACGGTTTGGGGATGGATACTTCGATCCGTCAAGCTTCATCCCGAG
CTACACAACCACGGACAAGGTCTTGGCGATCTTCAGGCTCGCCGTCGGGA
CCATTCTCGTGGTGCTCGGATCCTACCCGCTGGTGCGATTCTACCGGTCG
AGATGGATATTGGATATTCGCACAAGGTGAAGGAAGAAGAACGGGTGGTG
GTGTGACCTTTAAGGCAGCAGTAACCACCACACACAGCAGATTACGACAT
ATTTATATAGTAATTTGACGTTGTTTTACCCCGAAAATCTCGGAAATGAA
CCAGCGTTGTTTGTGTCTAGAGTTTCGAGTTCTTCTGCATTGCATGTGGA
TGGAAGAGGGCGTCGTTCAGTTCTTCGTGTACTGGGTGAGGCATCGGCTC
TTCTTGCAACCATGGGGAGCGTTGTACCTGTCGACTAGAAGGACATTCGA
TTTCGTCGTGCTCGCAGGAACTCCTCTTGTAGACTACTGGTAAACGTTTT
CGTTCCCCACATTCTCGAGGTTTGCATGACTCCCTGTGGCGTACAACACG
CGACTCAGCCCAGCCCGGTTGCAGACCTGGAACCTGTCCAGGTGTTGGTA
TCTTACTGTAGTCGAT
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protein sequence of EsuBft986_12a-0001

>EsuBft986_12 ID=EsuBft986_12|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=95bp
MAHPLRSISMDLAAVAPVVHLPRFDVGGGTGSSSYWEQRFGDGYFDPSSF
IPSYTTTDKVLAIFRLAVGTILVVLGSYPLVRFYRSRWILDIRTR
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mRNA from alignment at Scaffold_548:74814..76641-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft986_12a-0001 ID=EsuBft986_12a-0001|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1828bp|location=Sequence derived from alignment at Scaffold_548:74814..76641- (Ectocarpus subulatus male Bft15b)
GTACCGGTGGTGAGGATGTGAGGATCTACCCATCACCGCGCGCTCCCACA
CTAAATTACAACCATTGTTCGCCCCTCGCCCCAAGTTTCGGCGGCACGCT
GCGCTTCCTCCGCAGCTTGCACCCCAGCGCCCACCAGGCTCAAAGCACAG
GGGGGAGACACAGGAGAAGGGACACCGGACCAATCATGGCCGATGGCCCA
CCCACTTCGATCGATATCGATGGATCTAGCAGCCGTGGCGCCGGTGGTCC
ACCTTCCTAGATTTGACGTCGGAGGAGGCACCGGATCGTCCAGCTATTGG
GAGCAACGGTTTGGGGATGGATACTTCGATCCGTCAAGCTTCATCCCGAG
CTACACAACCACGGACAAGGGTAAGGTATAGAGCAATATGGAGGGCACGG
GGAGGGCACAGAGTTGCTTGGGAGGCTAGGCAAGGAATCTGTGTTGGAGC
GGTGTTCCTCGCAGCGCGGCGAATTTCCGAAAAAACCGTTCCGATTTTTG
CTGCAGTTCGTGTCTCGTTGTGTAAATCTCGTTCTGTGTCTCTCGTGCGC
GTTCTTCGACAGGTGTCCTACTGCTGTACATAAGAAAAAGGAGAAAAGGG
AAAGTTTTTTGACTTTTGGTCCGCAGCACACCACGTTACATACCACACCT
CACACTCACCGTGTCAGCCTTCATGCTCTCGAAAATACCGTGGGCTCGCT
CGATTCCTCCAGCTCACCTCGACCCTCTCGCTCTGGCAGGGTGCAGGCAC
GACCAACCTCACTTGCACATCAACATATCACTGTAAAGACTTCAACACAT
CCCCTTCGAGTGTAGTTATACCTCGAACGGGTAGTCTTTCTGTGTGTATA
TTTGTTTCTCCTAATATCAAAAAGTATTGTTCGCACAAGAACCGGAATGG
TTGTTCCGTGAACCAACTGCTCTGAACTTCTTCTCCCCTACAAATATTTG
CGCACTGCACTGACTGCAGAGAGACTTATTTGCACATGGCGTCTTGCCGA
CAGCGGGAGAGGTATCCACTACCTCGGTTCTCGCATACCATATGTATGGT
CGTGTTCGTGTGCTGAAGTAGCTAAGTGTTCGTCGTTCTTGTAGATGCGT
TACGTGGGTACCGTTTTCGATTCTTTTCAACAAACAGCAGCAGCCCCGCT
TTGGTCGAGCACGCGTTGTAGATGCAAGATCAACAAAGCAAAAAACACGA
CGGCGAAATAATTTTTTTGTCTACCCGATTTATTGCCGATGCAACAACTG
CTGCTGTGTCGTTGCGGTGCTGTGTCATGCAGTCTTGGCGATCTTCAGGC
TCGCCGTCGGGACCATTCTCGTGGTGCTCGGATCCTACCCGCTGGTGCGA
TTCTACCGGTCGAGATGGATATTGGATATTCGCACAAGGTGAAGGAAGAA
GAACGGGTGGTGGTGTGACCTTTAAGGCAGCAGTAACCACCACACACAGC
AGATTACGACATATTTATATAGTAATTTGACGTTGTTTTACCCCGAAAAT
CTCGGAAATGAACCAGCGTTGTTTGTGTCTAGAGTTTCGAGTTCTTCTGC
ATTGCATGTGGATGGAAGAGGGCGTCGTTCAGTTCTTCGTGTACTGGGTG
AGGCATCGGCTCTTCTTGCAACCATGGGGAGCGTTGTACCTGTCGACTAG
AAGGACATTCGATTTCGTCGTGCTCGCAGGAACTCCTCTTGTAGACTACT
GGTAAACGTTTTCGTTCCCCACATTCTCGAGGTTTGCATGACTCCCTGTG
GCGTACAACACGCGACTCAGCCCAGCCCGGTTGCAGACCTGGAACCTGTC
CAGGTGTTGGTATCTTACTGTAGTCGAT
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Coding sequence (CDS) from alignment at Scaffold_548:74814..76641-

>EsuBft986_12a-0001 ID=EsuBft986_12a-0001|Name=EsuBft986_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=288bp|location=Sequence derived from alignment at Scaffold_548:74814..76641- (Ectocarpus subulatus male Bft15b)
ATGGCCCACCCACTTCGATCGATATCGATGGATCTAGCAGCCGTGGCGCC
GGTGGTCCACCTTCCTAGATTTGACGTCGGAGGAGGCACCGGATCGTCCA
GCTATTGGGAGCAACGGTTTGGGGATGGATACTTCGATCCGTCAAGCTTC
ATCCCGAGCTACACAACCACGGACAAGGTCTTGGCGATCTTCAGGCTCGC
CGTCGGGACCATTCTCGTGGTGCTCGGATCCTACCCGCTGGTGCGATTCT
ACCGGTCGAGATGGATATTGGATATTCGCACAAGGTGA
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