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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft986_11 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rna-directed dna polymerase from mobile element jockey os:drosophila melanogaster gn:pol pe:1 s [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1433 |
| Evalue | 9.29e-72 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft986_11a-0001 ID=EsuBft986_11a-0001|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1433bp|location=Sequence derived from alignment at Scaffold_548:76866..80796+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCGAGTTACTCCCGACGTTGTCCGGACACATGCCGCACCAGCCCGTGA
GGCTAGCTATTCACCCTCACCTCGGCCGTGATACACACTACCATGGCGAA
CCAGCTACAGTACCGCAAGACAGTTACACAGTCGTCACTGCACGCCAGAC
CCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCATTTGAACCGC
AGCATACCGTTGTTCTACATGCTCTTTAGTGATACACCAAGTCGGCGTGA
CGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTGGGAGTCCTGCAC
AGGCGGAGGCGGAGGTGATGGAGTTAGTGATGCTTCAAGCGGCGTGGGAG
CGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCATGCTCCGGTGATGCG
TCTGTCGCGGACGATCGACTCCGGTGATGATACTGAGCTAACCCCTGAAA
GAAAGAGAAAGAGGGCGGGAAAGCCGGCGTACTGCTTCTTCCTGGACGTG
AAAAAGGCATACGACACCGTCTGGAAAAATGGGCTGTGGAAACAACTGTC
CAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCCGAAGAAGATGACAG
AGTGTACGACAAGCGCTGTCATGCTAGACGGAGAAATGTCTAAATTCTTC
GACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATCGTT
CCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGATAGATGCAGTCCGG
AAGGGATGGNGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGA
TGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCT
CGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGG
TAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTTGCA
AACCGGCACCTCCATACGNCAGAAGAGTGCCGTCATGGTCTAGAAGTGTA
CGGAATGTTGAAGGAAGGAATAGTGTTCAAGGACTACCCACATGGACCGA
TGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCTGGGACTTGGGC
CTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGA
GTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCG
CGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTG
GGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGTGA
GGAAAGGACGGTAGCTGATCTGGGGCATAGGAGGTGGGTTGAAATGGCGG
GAAGGAATATCGTTAGGATTGACAGACTAGGGAAGACATTTTTGAGCCAC
CTTTGGCAAAGTAGAAAGATTAGCCATCGGTGA back to topprotein sequence of EsuBft986_11a-0001 >EsuBft986_11 ID=EsuBft986_11|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=446bp
MANQLQYRKTVTQSSLHARPGAMHAADMVHLRHLNRSIPLFYMLFSDTPS
RRDEDDGDAASGIDLGSPAQAEAEVMELVMLQAAWEREELLRVRPVDHAP
VMRLSRTIDSGDDTELTPERKRKRAGKPAYCFFLDVKKAYDTVWKNGLWK
QLSKYGIKGKMWRVPKKMTECTTSAVMLDGEMSKFFDIEQGVPQGCTLSP
TSFQVFINDLLEVVDRCSPEGMXVCNENKEEPVEHRWKWGIEEIAVVDQY
TYLGVEIAKDCSWNAHMSKVAEKGKARAGKLHPILANRHLHTXEECRHGL
EVYGMLKEGIVFKDYPHGPMDAGTKLKVKFRTWDLGLRERRRRHRTVDEE
DDEFKCDCGFECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAW
NSEERTVADLGHRRWVEMAGRNIVRIDRLGKTFLSHLWQSRKISHR back to topmRNA from alignment at Scaffold_548:76866..80796+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft986_11a-0001 ID=EsuBft986_11a-0001|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3931bp|location=Sequence derived from alignment at Scaffold_548:76866..80796+ (Ectocarpus subulatus male Bft15b)
CCCCGAGTTACTCCCGACGTTGTCCGGACACATGCCGCACCAGCCCGTGA
GGCTAGCTATTCACCCTCACCTCGGCCGTGATACACACTACCATGGCGAA
CCAGCTACAGTACCGCAAGACAGTTACACAGTCGTCACTGCACGCCAGAC
CCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCATTTGAACCGC
AGCATACCGTTGTTCTACATGCTCTTTAGTGATACACCAAGTCGGCGTGA
CGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTGGGAGTCCTGCAC
AGGCGGAGGCGGAGGTGATGGAGTTAGTGATGCTTCAAGCGGCGTGGGAG
CGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCATGCTCCGGTGATGCG
TCTGTCGCGGACGATCGACTCCGGTGATGACTGCGACGCGTATCACTAGT
CTAACCAGTGGTAGAAGGAGGAGGAGGTCCTTGGCCTTCGGTGTTCACCG
AAACTCTGGCGAGGGGAGCGGCCCTCACCGGAAGACTCGTGTTGCCATGA
ACACCCGGCAACTGAACCGGGCCAGCCTTCTCATGAGTACGTTGACCTCC
ATCGTTGTCCATGATTGTTCAGCAGCGGTTGTGAGTGTAATGTGGTGGTA
GCCTTGCGGTGGGGGTGGAGGCGGAAGGTCTGATGTAGGTTGTGCCGAGC
GGGACCAAGTCTGCTGCCGAAAAGAGCCGAAAAGGGGGCTGCGTTCCTGG
AAATTTCTGCGTGATCAAGACCACAAACATTCCACTCGCATCTTCGCAAG
CGGTTTTCGAAATCAAATTTAAATTTTGATCTCATCTCGAACTTCCTCGC
AACTTCGAAGATGAAATCCCAACGCCAGTCCGCAATCACCGTAGTGTGTC
GGATCCTCCTTTTGTGGCGTGAAATTATTTTAATGAACTTGTCTGGATCG
CGTTCAACAGGTATTATTACATGCACCCAAGATCCTCTGACCTAAATTAA
CACGACGGAGTAGGTAGTTAGACTACGTTGAATTGATGTCGTCGTGGTGT
GCGATGCGGCACGTAGTAGTCTAGACAATGTGTACAGATGGCGCCCGCAC
TTAAGAACCTCTAGTTTCGGTCGAAGCTGGGGTTCTTATTTTGCTGATCA
TCTGATCATCCTCTTCTTGTGGGCTACAAATGGCCGCTATATATAGGTTT
TAGTCTAGGGTCTAGGGTTCTTAACCGAGCTCACAAATGGTGCTCAAGTT
CTTAGATTCTGATTTTTTTTCGAGTCTCAATTTCTTATCTGTAAAGTTCT
TAAGTGCAGGCGCAATCTGTCGTCTAGACTATAATAGTAGCTAGCCTGCT
GTAGACTACAGCAGGTGTCGTCGCCGTCTTGACAAATAAGAAATCGCCGT
CCGATCTATTTTGCTTCTCAACCAGTCCAAGTTATGGATAAAAGTTGACT
CAACAATAGTCTAGACTAATCATCCCAGGTTGAGCCTGGCTGGGTCAAAT
CAACTTACTTGCCCTATTGGTCGCCGTGGGTATCCCACTTGCTAGAAGTA
AGAAACCAACCTCTCGCGCAAAGGAAAGAGGTTGCGCCGCGTTCTGTGGT
GGGCCTTCGAGCGGTGTCCAGTGTGCGCTCACAGCCTTGCGCTGTTTCCT
AGATAAAGATCACGTCTCTCGCTCGCCGCTGGGGTGGGTGTAGACGTTTC
GCCACCGGTTTTGTACCGCGGTCATCATGCCAAACCTACTCCACCAGGTG
ATGATACTGAGCTAACCCCTGAAAGAAAGAGGTACGTCCTGTTCGGAAAC
AGTCAAGCAAAAGGCGGTTTTATCCCACCACATCCTCAATACAAAGTCTA
GAAACATCGATATATTGTACTCCTCATCGGGGAAGAAGTGGTGCAAAAAA
TAATGGGGGATTCCACCTCCAACATGTCGTATCCATCCAGTCCGGCACAA
TACGCTATCCACGTGTACCTTTCTGTATCCTTGCGGGAATAGATAGCCAT
TTACTCCATATGTTAACTGGAACAACGAGAACGTGCTTCGCTGAAGAGCG
TGTGTTGTGTGTGTAGAAAGAGAAGGTACGGTACTGGACAGAACGTAATA
TCACGTTTGTTTTTAATGCGTCGAAAGGAGGGAAGGGCGCCACCATCAGT
GTCACCAACCAAACACCACACACACCATTCCCACAAAATCAGCAACCAAC
AACCTCAACGAACTATTTTCGCCCTCACACTCCCTGCGAGTATATAACCG
CGCGTGTGTGGTGCCGTGAGACGCTGATTGTACCTAAAGTTTGAAGCGAA
AGCGAAACAATGGCGATACAGAATCTATGTAACTACGTAATACTCGCCCC
CCCGCCCCCGCCCCCCCAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCC
GGCGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTCTGGA
AAAATGGGCTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATG
TGGAGAGTGCCGAAGAAGATGACAGAGTGTACGACAAGCGCTGTCATGCT
AGACGGAGAAATGTCTAAATTCTTCGACATTGAGCAGGGGGTCCCACAAG
GTTGCACGCTGTCCCCAACATCGTTCCAGGTGTTCATCAACGATCTGTTG
GAAGTCGTAGATAGATGCAGTCCGGAAGGGAGTAAAAATAGGGGACACGG
AAACGTCGGTGTCAGGAATGCCGTTTGCGGATGATTTTGTCGGTATGTCG
GACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTAC
TGACAAGTGGNGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAG
ATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACC
TCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAG
GTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTTGC
AAACCGGCACCTCCATACGNCAGAAGAGTGCCGTCATGGTATGGAACGAG
AACAAGGAGGAACCAGTAGAGCATTGGTGGACGTGGGGGATCGAGGAGAT
TGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACT
GCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGA
GCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCAT
CAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAAATATCTGTTGCTTGTGCCGAGAGCGAAAA
ACATAACCTTAGGAAATAATCCAAGAATAAGGAAGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGTGTTCAAGGACTACCCACATGGACCGATG
GATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCTGGGACTTGGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGT
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGTGAGG
AAAGGACGGTAGCTGATCTGGGGCATAGGAGGTGGGTTGAAATGGCGGGA
AGGAATATCGTTAGGATTGACAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGAAAGATTAGCCATCGGTGA back to topCoding sequence (CDS) from alignment at Scaffold_548:76866..80796+ >EsuBft986_11a-0001 ID=EsuBft986_11a-0001|Name=EsuBft986_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1341bp|location=Sequence derived from alignment at Scaffold_548:76866..80796+ (Ectocarpus subulatus male Bft15b)
ATGGCGAACCAGCTACAGTACCGCAAGACAGTTACACAGTCGTCACTGCA
CGCCAGACCCGGTGCAATGCATGCTGCCGATATGGTGCATTTGCGCCATT
TGAACCGCAGCATACCGTTGTTCTACATGCTCTTTAGTGATACACCAAGT
CGGCGTGACGAGGATGACGGCGATGCTGCGAGCGGCATAGATCTTGGGAG
TCCTGCACAGGCGGAGGCGGAGGTGATGGAGTTAGTGATGCTTCAAGCGG
CGTGGGAGCGTGAGGAGCTGCTGCGCGTGCGTCCTGTGGACCATGCTCCG
GTGATGCGTCTGTCGCGGACGATCGACTCCGGTGATGATACTGAGCTAAC
CCCTGAAAGAAAGAGAAAGAGGGCGGGAAAGCCGGCGTACTGCTTCTTCC
TGGACGTGAAAAAGGCATACGACACCGTCTGGAAAAATGGGCTGTGGAAA
CAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCCGAAGAA
GATGACAGAGTGTACGACAAGCGCTGTCATGCTAGACGGAGAAATGTCTA
AATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCA
ACATCGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGATAGATG
CAGTCCGGAAGGGATGGNGGTATGCAACGAGAACAAGGAGGAACCAGTAG
AACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTAC
ACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACAT
GTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAA
TACTTGCAAACCGGCACCTCCATACGNCAGAAGAGTGCCGTCATGGTCTA
GAAGTGTACGGAATGTTGAAGGAAGGAATAGTGTTCAAGGACTACCCACA
TGGACCGATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCTGGG
ACTTGGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAA
GACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCA
TGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGA
CTGAGCTGGGAAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGG
AATAGTGAGGAAAGGACGGTAGCTGATCTGGGGCATAGGAGGTGGGTTGA
AATGGCGGGAAGGAATATCGTTAGGATTGACAGACTAGGGAAGACATTTT
TGAGCCACCTTTGGCAAAGTAGAAAGATTAGCCATCGGTGA back to top
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