EsuBft985_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft985_4a-0001
Unique NameEsuBft985_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:396207..400421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G834
ProteomeIdEsuBft985_4
Protein domainsIPR029063
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length169
Hectar predicted targeting categoryother localisation
Evalue1.07e-50
EggNOG OGs2D163@1|root,2SGUP@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft985_4aEsuBft985_4aEctocarpus subulatus male Bft15bgeneScaffold_358 396207..400421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_4a-0001EsuBft985_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 396687..400112 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_4a-0001-exonagat-exon-17651Ectocarpus subulatus male Bft15bexonScaffold_358 396207..396824 -
EsuBft985_4a-0001-exonEsuBft985_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 397231..397347 -
EsuBft985_4a-0001-exonagat-exon-17654Ectocarpus subulatus male Bft15bexonScaffold_358 398704..398950 -
EsuBft985_4a-0001-exonagat-exon-17652Ectocarpus subulatus male Bft15bexonScaffold_358 399560..399765 -
EsuBft985_4a-0001-exonagat-exon-17653Ectocarpus subulatus male Bft15bexonScaffold_358 399912..400421 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_4a-0001-exonagat-three_prime_utr-23786Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 396207..396686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_4a-0001-cdsEsuBft985_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 396687..396824 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_4a-0001-exonagat-five_prime_utr-15500Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_358 400113..400421 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft985_4a-0001 ID=EsuBft985_4a-0001|Name=EsuBft985_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1698bp|location=Sequence derived from alignment at Scaffold_358:396207..400421- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTGACTTTCGACTACAACTGGTGGTGCCAGTGGGTCAGTTGGTAAAC
TCGTCTCTCTGTGGCTCTCAACCTTGTGGGATTCGAATCTCTCACAGAAG
CACGGGGCAGAGGTGTGAAAAATTACGCGGTGTCATTTGAGACTGTCAAT
TCTGGCGAATTGACAGACTCGAAATTTACAACTGACTTGAGAGTGGACGA
GAGGGGTTAGTGAGCTGATAGCTGATAACTGAATCCTCGGCGAAGCATGG
CTATTTCAAACGCACTTGTTGCGATTGTTTGCCTTGCCTTACCACATTGT
AGGGCGTTTATGAGTACGCCCTCGGCTCCCACACGCACATCTCACCATTC
GCGGAGCCATCGGCATTTTGAAAGTGGTTGTAGCAGCAGTAGATCCATCC
TTGCGCATCCGAGTACGACGACAAGGAGCTGCGACCCTCCAGCTGCGGCT
TTGGCGAACGAAGATGGAAGAGCAGGCGTCCTGGACATTCTTTTTGGGGG
CTCGTATCAGGAGCGCATCGAAATTGGGCGCGATGCCCAGGGATTTTTGA
CGACGGATGCTCTCGCAGCGAGAACGTTGGTGCCCCCACGAGAGTTAACT
TACGGCGAATACGATTTGGACTTCTTCCTGTCGTTGGTTGCCGAGTGCCT
CAACTTGCGAGCCGGGAATAGCGGTAAGGACGACAGCAGTGTCGGTGCTT
TGGAAGCTGAGGCGAGATCACTCATTTTTGGCGATATTGGCTCTGGATGC
GGGCGTCTCGTGGTCGCGCAAGCTCTAACCTGGCCGTGGAAATCCTGCCG
CGGCGTCGAGATTGTGCCTTCTCTCCACGACATGGGACAAGCGGCCCTGC
AAGAGGCCGATCGGTTGGCAAAGGGAGAGGAGAACGCACTTTCCCCGGAA
ACCTCACGACTGTTGAGATCCATGGCGCCCTGCTCGCTATCTCTGGGTGA
CGTGAACGATGATGTGGACATTTCCGACATCGACGTGTTGTTCTGTTACA
GCAGCTCGTTCCCTGCCTTTGGCGACCTCCTCACCGAATTTTCCTACACC
CTCGGACACAAGCTTCGACCTGGTGCTCAGGTCATCACAACCGACCGTCG
CCTGGTATCCGATGGTCCCTGGGAGTTTGCTCTGCTAGGAGAGCGCGAGG
GCAGAAATTCCGAGACCGGCGGCAAGTCGATCGCGTACATCTGGGAGGTT
GTACGATCAGCGCTGTGATCGTAGTACAACAAAGCCACACCGAAACGTGT
GGATGAAGCCGCCGCCCGCCTCGTGAGCCGGGTCTCATGTCCATCTGCAG
AGCGTGGGTACCCACACAAGCGAGCCCTGAACGCGGTGTCTTCAGAAGAC
TCTGGCTGGTACCAGCGGAGGCTTCGGTAGATGTCCCGACGAAGTCACCA
GCCACGGGGCTGCCCATCATGCCTCACGTCTTCGGACGGCTGGCGCCGTC
TTCGATGCGGTGCCTTTTCTTGTGCCACAACGATTTTCTGCAGGGTCAAA
ACGCAAGGGTCGTGTGAGTCTTTTCAAAGCTGTACGAAGCTACTGAAGAG
CGCTTCACACGCAACACACTCGAAGCTGCGGGCCTGGGGGGTTGAATATC
GGGAAAGCTCAAGTTCCACCTGTGGTTAACGCGACAGCATGAGCGCGATC
AAAGCCTCTTCATCGCCGTGGCTCCAATATGCACCAGCAATTGACTCG
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protein sequence of EsuBft985_4a-0001

>EsuBft985_4 ID=EsuBft985_4|Name=EsuBft985_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=302bp
MSTPSAPTRTSHHSRSHRHFESGCSSSRSILAHPSTTTRSCDPPAAALAN
EDGRAGVLDILFGGSYQERIEIGRDAQGFLTTDALAARTLVPPRELTYGE
YDLDFFLSLVAECLNLRAGNSGKDDSSVGALEAEARSLIFGDIGSGCGRL
VVAQALTWPWKSCRGVEIVPSLHDMGQAALQEADRLAKGEENALSPETSR
LLRSMAPCSLSLGDVNDDVDISDIDVLFCYSSSFPAFGDLLTEFSYTLGH
KLRPGAQVITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRS
AL
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mRNA from alignment at Scaffold_358:396207..400421-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft985_4a-0001 ID=EsuBft985_4a-0001|Name=EsuBft985_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4215bp|location=Sequence derived from alignment at Scaffold_358:396207..400421- (Ectocarpus subulatus male Bft15b)
GTTGTGACTTTCGACTACAACTGGTGGTGCCAGTGGGTCAGTTGGTAAAC
TCGTCTCTCTGTGGCTCTCAACCTTGTGGGATTCGAATCTCTCACAGAAG
CACGGGGCAGAGGTGTGAAAAATTACGCGGTGTCATTTGAGACTGTCAAT
TCTGGCGAATTGACAGACTCGAAATTTACAACTGACTTGAGAGTGGACGA
GAGGGGTTAGTGAGCTGATAGCTGATAACTGAATCCTCGGCGAAGCATGG
CTATTTCAAACGCACTTGTTGCGATTGTTTGCCTTGCCTTACCACATTGT
AGGGCGTTTATGAGTACGCCCTCGGCTCCCACACGCACATCTCACCATTC
GCGGAGCCATCGGCATTTTGAAAGTGGTTGTAGCAGCAGTAGATCCATCC
TTGCGCATCCGAGTACGACGACAAGGAGCTGCGACCCTCCAGCTGCGGCT
TTGGCGAACGAAGATGGAAGAGCAGGCGTCCTGGACATTCTTTTTGGGGG
CTCGTATCAGGTGAGAAGTGTGTGTTGTGTGCCGTGGAGTCACTTCAGCG
GGGACATTTCTGAGGGTGGCGTATCATCGGCACGTCTCGACCGGTCAGAC
CCCGCCCACAACTCGAGCCCATGCTCTGCCTTCTATCGTCCGCCTCTCCC
GTCCAGGAGCGCATCGAAATTGGGCGCGATGCCCAGGGATTTTTGACGAC
GGATGCTCTCGCAGCGAGAACGTTGGTGCCCCCACGAGAGTTAACTTACG
GCGAATACGATTTGGACTTCTTCCTGTCGTTGGTTGCCGAGTGCCTCAAC
TTGCGAGCCGGGAATAGCGGTAAGGACGACAGCAGTGTCGGTGCTTTGGA
AGCTGAGGCGAGGTGAGCCCGTGATGCCGCTGAAGTCCGTGTCTTTCGTG
CCAATACTTTGCTTCCCTCAACCGGACAGCTGACAAGATCGTTATCGGAA
GCAATCCCAAGCTATCCCAAGCGATCCCCAGCGATCACACAATGCCAAGA
AAGGACACCCGACAGCTTCTTCCCTTGACAACAAATATGCACGCCCAACT
CCTCTCCTCACAAAATGTCGGTCTCCATCACAGGAAAGTAGCCATTTAGT
TTACGCCCACGAGATGTTGCCACGAACCCTCTTTGTCTGAGTCTCAAACT
ACATATTCTCTATCTTGTATCAACAAGCAGTCACAGCAGTTGCTGGCGAA
CAACACCATTTCAATGTGGTATCTAGACATGGACCCTCCGCGCCTCACTC
CTGCAACAACGCTGGCTTCGCTCCAAGTCGTAGTTCAGTCGAACCAACCA
GTCATCACGGTTTTACTCTCGAAGGAACCCCTTTGGATATATGATGTAGA
CGTGGATAGCCTTGCTTTCTCATCGTTGTTTCATGCGACACACATCGCCG
ACCTACTCTTCCCACCCCATCCTCCGAACGACCGTACCCGATGTGGTGGA
TCGACCGCTTCTGGTTGGTAGATCACTCATTTTTGGCGATATTGGCTCTG
GATGCGGGCGTCTCGTGGTCGCGCAAGCTCTAACCTGGCCGTGGAAATCC
TGCCGCGGCGTCGAGATTGTGCCTTCTCTCCACGACATGGGACAAGCGGC
CCTGCAAGAGGCCGATCGGTTGGCAAAGGGAGAGGAGAACGCACTTTCCC
CGGAAACCTCACGACTGTTGAGATCCATGGCGCCCTGCTCGCTATCTCTG
GGTGACGTGAACGATGATGTGAGTAGAGGCATACCATGGTAAGCCGCACC
GACTTCCCGGGATTGAAATTTGGAATTTTTCGCTCTATTGGACAGTTTCG
CACTAAAACAATTCTCCAGCTAAAGGAGACAGATTTTTGAGTTAAGCCAT
CGTTCTGAGGATCGCTCCTGACAGCCTCCCCAGAACCCACGATATGGAAA
AAAAAATCAAGAGTAAGAGCGGAGGGAGGCTCGTTTTGTGGAAGAGTTGT
TCACGAGTTTCCGACTTGGCAACCTTCTTCGAAGAAACACATGGGGCACC
ACCCATATGCACACACAGGAACCGGCGCACCACCAGCACGAAAGGGGGGC
TGCACGGTCAGAAAGCCAAGTTGGATTTGTTTGCGCGGCTTTTAGGTCAG
CAACAAGCACCTGTCACTCACAGGTTGAGGCAAGGGGGAAGAAGAGCGCC
GGAACCGCGGAAACAATGACGACCGACAACGTAGAGAGAGGTGGTGGCAG
CACCGCGACCAACGAAGAGCAGAGAGGAGGAATAGCACGCAGTGGCCTCC
TGGTGAAGACGGGCGCGTCCTTCCCCGCGCAAGAGCATTCTCTGGTTTTG
TTGGAGAGAGCGTTTGACTTGGATGTGCTCCCGTCCCGAAAACCCCTGTC
CAATCCCGAACGCTTGAGAAGTGGGATATATAGCACTTCGTTCAGAGGTG
CCGGCCAGTATGATTACTTCCTGTCGCCGTACTGGTGTGGTGCGATTTCG
TGTGCTGGGGTTGAGGGGGCGACAGAGACACGCACACGCGTTGCATACAC
GAAAACTCAACAGTAGTGGCGGGAGTGCTGCCATCAGGGTGCAGCTGCCA
CGTAGCGCACCACACAAAAAAAGCAGTACCTGTCGGTGGACAGGGGAAGT
TTGTTGGGTGGAACAGGAGGACTGTTGCCCCACAGCCTATCACATGACGC
GGCTTGAATCTGAAAATGTTTGCCTGCACGAAGTTTGCAGGAAACTTTCT
TATCTCAAAATCTGCTTCCTCCTTAAACGGAAAAGTTTGGAGCCCCAGTT
CGAAACTGTGTATTGTTTTATTGCTCACAAAAATCGGCCATCTATCCGCG
TACCCTACGTTCCAGGACAACAGAGGATAATAACAGTACAATTTTACCTC
GGTGTGTGTGTGCTAGTAACACCAGCTGGGGCACCATGGCACGCAGCAAC
ATTCATGGCGGTTTCACCGGGGTGTGTGTACCCTTCCGCGATGATTTCAG
CTCGGTTACGAGGATCACGTTTTGCGAACAACGTCGATTCTTCTTTGTCA
ACATCGCTAATTATCCCATTCGGCGATCACTCGGAAACAACGCGTGCGCG
CTCGGCCGATGGGCAATGCAACAGGTGGACATTTCCGACATCGACGTGTT
GTTCTGTTACAGCAGCTCGTTCCCTGCCTTTGGCGACCTCCTCACCGAAT
TTTCCTACACCCTCGGACACAAGCTTCGACCTGGTGCTCAGGTATGAGAA
CGCTGTACAACGGGGCTAGTCAGGGTATCAATGGGAAGGCCGATTCCGAC
ACAACCTTCCCCCAAAACGAAAATAGAGGCGGAGGTGCTTTTCCGCGTCT
AGCCAACGTTCTAGACTTTGCACTTCTCGTTCAGGAACGACTCCATTGTA
GGCGTTATAACACCAAGGACGCCAAGGAAACAGATCGAAGTGCAGAGTAC
CGTACACTGCCTGAGTGCTGAGACCACGCTTGTCTCACTGCGTACATCCG
ACGGATCCCGTTCTTGAAGACCATCGCCAAACAAACTGATGCAACCTCCC
CCTATAGGTCGATCGCTTCTCTCTCACACTCGCTTTATCACTTTCCCTGA
TTCTGTCTTTGTCTTTCACTCTCTCCGCTCATCCTCTGCTTGGATAGGTC
ATCACAACCGACCGTCGCCTGGTATCCGATGGTCCCTGGGAGTTTGCTCT
GCTAGGAGAGCGCGAGGGCAGAAATTCCGAGACCGGCGGCAAGTCGATCG
CGTACATCTGGGAGGTTGTACGATCAGCGCTGTGATCGTAGTACAACAAA
GCCACACCGAAACGTGTGGATGAAGCCGCCGCCCGCCTCGTGAGCCGGGT
CTCATGTCCATCTGCAGAGCGTGGGTACCCACACAAGCGAGCCCTGAACG
CGGTGTCTTCAGAAGACTCTGGCTGGTACCAGCGGAGGCTTCGGTAGATG
TCCCGACGAAGTCACCAGCCACGGGGCTGCCCATCATGCCTCACGTCTTC
GGACGGCTGGCGCCGTCTTCGATGCGGTGCCTTTTCTTGTGCCACAACGA
TTTTCTGCAGGGTCAAAACGCAAGGGTCGTGTGAGTCTTTTCAAAGCTGT
ACGAAGCTACTGAAGAGCGCTTCACACGCAACACACTCGAAGCTGCGGGC
CTGGGGGGTTGAATATCGGGAAAGCTCAAGTTCCACCTGTGGTTAACGCG
ACAGCATGAGCGCGATCAAAGCCTCTTCATCGCCGTGGCTCCAATATGCA
CCAGCAATTGACTCG
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Coding sequence (CDS) from alignment at Scaffold_358:396207..400421-

>EsuBft985_4a-0001 ID=EsuBft985_4a-0001|Name=EsuBft985_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=909bp|location=Sequence derived from alignment at Scaffold_358:396207..400421- (Ectocarpus subulatus male Bft15b)
ATGAGTACGCCCTCGGCTCCCACACGCACATCTCACCATTCGCGGAGCCA
TCGGCATTTTGAAAGTGGTTGTAGCAGCAGTAGATCCATCCTTGCGCATC
CGAGTACGACGACAAGGAGCTGCGACCCTCCAGCTGCGGCTTTGGCGAAC
GAAGATGGAAGAGCAGGCGTCCTGGACATTCTTTTTGGGGGCTCGTATCA
GGAGCGCATCGAAATTGGGCGCGATGCCCAGGGATTTTTGACGACGGATG
CTCTCGCAGCGAGAACGTTGGTGCCCCCACGAGAGTTAACTTACGGCGAA
TACGATTTGGACTTCTTCCTGTCGTTGGTTGCCGAGTGCCTCAACTTGCG
AGCCGGGAATAGCGGTAAGGACGACAGCAGTGTCGGTGCTTTGGAAGCTG
AGGCGAGATCACTCATTTTTGGCGATATTGGCTCTGGATGCGGGCGTCTC
GTGGTCGCGCAAGCTCTAACCTGGCCGTGGAAATCCTGCCGCGGCGTCGA
GATTGTGCCTTCTCTCCACGACATGGGACAAGCGGCCCTGCAAGAGGCCG
ATCGGTTGGCAAAGGGAGAGGAGAACGCACTTTCCCCGGAAACCTCACGA
CTGTTGAGATCCATGGCGCCCTGCTCGCTATCTCTGGGTGACGTGAACGA
TGATGTGGACATTTCCGACATCGACGTGTTGTTCTGTTACAGCAGCTCGT
TCCCTGCCTTTGGCGACCTCCTCACCGAATTTTCCTACACCCTCGGACAC
AAGCTTCGACCTGGTGCTCAGGTCATCACAACCGACCGTCGCCTGGTATC
CGATGGTCCCTGGGAGTTTGCTCTGCTAGGAGAGCGCGAGGGCAGAAATT
CCGAGACCGGCGGCAAGTCGATCGCGTACATCTGGGAGGTTGTACGATCA
GCGCTGTGA
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