EsuBft985_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft985_2a-0001
Unique NameEsuBft985_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_358contigScaffold_358:389174..390632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft985_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length39
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft985_2aEsuBft985_2aEctocarpus subulatus male Bft15bgeneScaffold_358 389174..390632 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_2a-0001-exonagat-exon-17644Ectocarpus subulatus male Bft15bexonScaffold_358 389174..389335 -
EsuBft985_2a-0001-exonagat-exon-17645Ectocarpus subulatus male Bft15bexonScaffold_358 389559..389743 -
EsuBft985_2a-0001-exonEsuBft985_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_358 390581..390632 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_2a-0001-exonagat-three_prime_utr-23785Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_358 389174..389311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_2a-0001-cdsEsuBft985_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_358 389312..389335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft985_2a-0001EsuBft985_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_358 389312..390632 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft985_2a-0001 ID=EsuBft985_2a-0001|Name=EsuBft985_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=399bp|location=Sequence derived from alignment at Scaffold_358:389174..390632- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGACCGGTTGAATCTGCTCTCGAAGTCCTTTCTACATAGCAGCCC
CGGGTTTTCCCCGCGCCGGCGGGGGGAGAAAGACGAGCCGCAGGCACTCG
TGGCGGGAGCGGCAGCATCGGCAGCAGCACCGGCGGCGAGAAGAGGGACC
ACCGGCAGTCATGTGTTCCCCGCGACGCCGACCGTCGGGACGGCCGGGGT
GCAGGCACTTACGGATAGAGCGGTACCATCGGTAGCACAGCACCGGCGGC
GAGAGTGGTGACCCCCGGCGGCAGGGGTTTCCCCCGGCGGCGGCGGGGGA
GACGGCCGGGCAGCAGGCTCTCGTGGCGGGAGCGGCAGCATCGGCAGCAA
CACCGGCGGCGAGAGGGGACCACCGTCAGTCATGTGTTCCCCGCGGCGG
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protein sequence of EsuBft985_2a-0001

>EsuBft985_2 ID=EsuBft985_2|Name=EsuBft985_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=86bp
MMDRLNLLSKSFLHSSPGFSPRRRGEKDEPQALVAGAAASAAAPAARRGT
TGSHVFPATPTVGTAGVQALTDRAVPSVAQHRRREW
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mRNA from alignment at Scaffold_358:389174..390632-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft985_2a-0001 ID=EsuBft985_2a-0001|Name=EsuBft985_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1459bp|location=Sequence derived from alignment at Scaffold_358:389174..390632- (Ectocarpus subulatus male Bft15b)
ATGATGGACCGGTTGAATCTGCTCTCGAAGTCCTTTCTACATAGCAGCCC
CGGTTTAAAGCTTTATTCGGTGAAACGACTTCCGATAGGAAATGTTTTCT
GGTAGGGTGGACCGACTTCCTCCGCGAATGGGTTTCAAATCTTCTGGTTT
AGCTGCCGCTTGCTCGATAGCCATTTATTGCCTTTCGTCAGTTGCCAAGC
TTTACCCCCACACACGACGGTGGCCGAGGTTCATCTCGGCAAACATGGTT
TCGCGACGACCCTCCCAACCCCGCCGTAGGCCAGGTCTGGCTACGATCGT
ACAGTCAACTATGCCTACATATTCTGGCAAACCCCCGCCCCACAAAACTC
ATCTTCACCTTGGCAAAAGAGGGGCGAGTCTCCATCTGAGAGATTGAAAA
AGTGAAGGGTCTACGCCAAGCTTCATGAAACAGCACGATTTAGTTCCACG
CCGTCGGGAACCCCGTACAGAGCGAACTCGTCACCCATATGATAGCTTTA
ATCTTGATTGATGTGCAACTCCTCGACGACTTTCGTCGGCGTTGCCTGTC
TGAAGCGATCCTTGTATTTTCACGGAAAGCCGCAACTGCTCGAGCACGAA
CACAGCAAATACAAAGTGACTAAAGAATGAAGGCGTCCAGGCCGTGATGA
AGACCCTAAAACAGCTATGGTGCCGACGATAACAAGGCCAAAGAGCTAAA
TCTGGCGAAAACCTACGATGAGAGGATACTACAATAAATACCTAACGCGA
AAGAGTTACACGAAAAATCGCCTCAAGTGCTTCTCCGCGATGGACTGACA
GGGGAGACGGCCGGGGCTCAGGGACTCGCGGAGGGGGCGGCACCATCGGT
AGCAGTATCAGGGACGAGAGTGGTGATCCCCGGCGGCAGGGTTTTCCCCG
CGCCGGCGGGGGGAGAAAGACGAGCCGCAGGCACTCGTGGCGGGAGCGGC
AGCATCGGCAGCAGCACCGGCGGCGAGAAGAGGGACCACCGGCAGTCATG
TGTTCCCCGCGACGCCGACCGTCGGGACGGCCGGGGTGCAGGCACTTACG
GATAGAGCGGTACCATCGGTAGCAGTATCAGGGACGAGAGTGGTGACCCC
CGGCCGCAGGGTTTTCCCCGCGGCGGAGGCAGCGAGGGAGACGGCCGAGC
AGCAGGCTCTCGTGGCGGGAGCGGAAGCATCGGCAGCACCACCGGTGGCC
AGAAGTGGGACCACCGGCAGTCGTGTGTTCCCCGCGAAGCCGGCCGTCGG
GACGGTCGGGGTGCAAGCACTCGCGGCTACAGCGGTACCATCGGTAGCAG
CACCGGCGGCGAGAGTGGTGACCCCCGGCGGCAGGGGTTTCCCCCGGCGG
CGGCGGGGGAGACGGCCGGGCAGCAGGCTCTCGTGGCGGGAGCGGCAGCA
TCGGCAGCAACACCGGCGGCGAGAGGGGACCACCGTCAGTCATGTGTTCC
CCGCGGCGG
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Coding sequence (CDS) from alignment at Scaffold_358:389174..390632-

>EsuBft985_2a-0001 ID=EsuBft985_2a-0001|Name=EsuBft985_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=261bp|location=Sequence derived from alignment at Scaffold_358:389174..390632- (Ectocarpus subulatus male Bft15b)
ATGATGGACCGGTTGAATCTGCTCTCGAAGTCCTTTCTACATAGCAGCCC
CGGGTTTTCCCCGCGCCGGCGGGGGGAGAAAGACGAGCCGCAGGCACTCG
TGGCGGGAGCGGCAGCATCGGCAGCAGCACCGGCGGCGAGAAGAGGGACC
ACCGGCAGTCATGTGTTCCCCGCGACGCCGACCGTCGGGACGGCCGGGGT
GCAGGCACTTACGGATAGAGCGGTACCATCGGTAGCACAGCACCGGCGGC
GAGAGTGGTGA
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