EsuBft984_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft984_8a-0001
Unique NameEsuBft984_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_339contigScaffold_339:292029..293074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft984_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length104
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft984_8aEsuBft984_8aEctocarpus subulatus male Bft15bgeneScaffold_339 292029..293074 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_8a-0001-exonEsuBft984_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_339 292029..293074 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_8a-0001-exonagat-three_prime_utr-23784Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_339 292029..292428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_8a-0001-cdsEsuBft984_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_339 292429..292953 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_8a-0001-exonagat-five_prime_utr-15498Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_339 292954..293074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft984_8a-0001EsuBft984_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_339 292429..292953 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft984_8a-0001 ID=EsuBft984_8a-0001|Name=EsuBft984_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1046bp|location=Sequence derived from alignment at Scaffold_339:292029..293074- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGAGCACAGGTCAACATGCACGAGCCGTAAAAATACGCACTATCGAGAG
CACTCAACGGCCTTCGCGTCAAACACGACGTTGAAAGCGGGGCACCCTTC
ACGGGGGAAAGAAACCTGAGCATGGACGTCGTCATCAGGCCAGGAGCCCT
CACGAACGCAACTTCTCCGGGGTACCGCAGCAAAGGAATACTCCTCGTAG
TCACACAAGCAGATCCACAAGCACAGGTACACTTGCGGAACGGCAGCGCG
ACCAGCGATGGAACCGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCA
CTACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCAGTTTTAAACTTA
CCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAG
TTCATCGATGACCTTGCGACACATGCCGTGGGAGGAAGGGACGAAGGAAC
GATGGATCTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGG
TGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCA
TTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGAA
CCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACG
CGTTTTCGTTTGAAGTTGGCGTCTTGTTTGAGAGTAGATGTGACAGATTT
GCGTAGAATAGGGTAAGATGTTATCATGAACGGAGAAGAAAGGGCTTTTC
CAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTT
ACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATAC
AGGATACCATGAGGATTGTCATTGGTTTTATTTTAAATTGAAGAGAAGAT
ATTTTTTCGATGTAAGTGACAGTAGAAATAAGTCCTACATATGTTGTTGT
AGTTCGTATTGGTTTAATATTCATGTAGAGTATGAGACATTAAGCGCAAG
TTTTATGAGGTACATCTGCAATTGTCGGAAGGCAAAAAAAACAAAA
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protein sequence of EsuBft984_8a-0001

>EsuBft984_8 ID=EsuBft984_8|Name=EsuBft984_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=174bp
MDVVIRPGALTNATSPGYRSKGILLVVTQADPQAQVHLRNGSATSDGTAA
QASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDDLAT
HAVGGRDEGTMDLKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDA
ENRRTRSTSNQSTPMIWGWSVDAS
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mRNA from alignment at Scaffold_339:292029..293074-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft984_8a-0001 ID=EsuBft984_8a-0001|Name=EsuBft984_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1046bp|location=Sequence derived from alignment at Scaffold_339:292029..293074- (Ectocarpus subulatus male Bft15b)
TGGAGCACAGGTCAACATGCACGAGCCGTAAAAATACGCACTATCGAGAG
CACTCAACGGCCTTCGCGTCAAACACGACGTTGAAAGCGGGGCACCCTTC
ACGGGGGAAAGAAACCTGAGCATGGACGTCGTCATCAGGCCAGGAGCCCT
CACGAACGCAACTTCTCCGGGGTACCGCAGCAAAGGAATACTCCTCGTAG
TCACACAAGCAGATCCACAAGCACAGGTACACTTGCGGAACGGCAGCGCG
ACCAGCGATGGAACCGCAGCCCAAGCATCCGAGGCGCGAAAGCGTCAGCA
CTACGCTCGTCCGGGACACGTGTCCTTTGACGAACGCAGTTTTAAACTTA
CCACCTTAGCCGTGGAAAGCTTTGGCCGCCTTGGAGAGGAGGGTTACGAG
TTCATCGATGACCTTGCGACACATGCCGTGGGAGGAAGGGACGAAGGAAC
GATGGATCTGAAAGGAGTCTTCAAGGAACGACTTCTTCAGATCGTTTCGG
TGGCTACACAGGTGGCCATATCTCGGCGAGTGCAGAGGTACAAGCTCGCA
TTGCGCGGGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGAA
CCAGTCAACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACG
CGTTTTCGTTTGAAGTTGGCGTCTTGTTTGAGAGTAGATGTGACAGATTT
GCGTAGAATAGGGTAAGATGTTATCATGAACGGAGAAGAAAGGGCTTTTC
CAACACGGAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTT
ACAAGCGGACATCAACGCAGTAGTATTTTAGCAAGCTTACGAACGCATAC
AGGATACCATGAGGATTGTCATTGGTTTTATTTTAAATTGAAGAGAAGAT
ATTTTTTCGATGTAAGTGACAGTAGAAATAAGTCCTACATATGTTGTTGT
AGTTCGTATTGGTTTAATATTCATGTAGAGTATGAGACATTAAGCGCAAG
TTTTATGAGGTACATCTGCAATTGTCGGAAGGCAAAAAAAACAAAA
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Coding sequence (CDS) from alignment at Scaffold_339:292029..293074-

>EsuBft984_8a-0001 ID=EsuBft984_8a-0001|Name=EsuBft984_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=525bp|location=Sequence derived from alignment at Scaffold_339:292029..293074- (Ectocarpus subulatus male Bft15b)
ATGGACGTCGTCATCAGGCCAGGAGCCCTCACGAACGCAACTTCTCCGGG
GTACCGCAGCAAAGGAATACTCCTCGTAGTCACACAAGCAGATCCACAAG
CACAGGTACACTTGCGGAACGGCAGCGCGACCAGCGATGGAACCGCAGCC
CAAGCATCCGAGGCGCGAAAGCGTCAGCACTACGCTCGTCCGGGACACGT
GTCCTTTGACGAACGCAGTTTTAAACTTACCACCTTAGCCGTGGAAAGCT
TTGGCCGCCTTGGAGAGGAGGGTTACGAGTTCATCGATGACCTTGCGACA
CATGCCGTGGGAGGAAGGGACGAAGGAACGATGGATCTGAAAGGAGTCTT
CAAGGAACGACTTCTTCAGATCGTTTCGGTGGCTACACAGGTGGCCATAT
CTCGGCGAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGACGCC
GAAAACAGGCGAACAAGATCGACCTCGAACCAGTCAACGCCAATGATATG
GGGATGGAGTGTAGACGCATCGTAG
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