Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FI08 |
| ProteomeId | EsuBft983_9 |
| Protein domains | PTHR19303 |
| Protein domains | IPR004875 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 158 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.04e-203 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003676 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft983_9a-0001 ID=EsuBft983_9a-0001|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1589bp|location=Sequence derived from alignment at Scaffold_233:415088..416873- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTACGGTCAGTTCCAGCTCTGGGAGCGTTGGAATGTGGATCAAGTGCCTT
TGCCATTCGTGAACGGGCTGATCAGCACGTGGGAGAAGACAGGCGCGTTG
CGTGTAGCCATCTCGCAGCCCTTTGCTGGCCTAGAGAAAAGGCAGTGCAC
CATGCAAGTCATCTTCGGTCCGGGTGAGAAGAATATGCGGATTTCGGTGA
TTTTCCGAGGTCAGGGGAAGCGGATTTCGCCGGTGGAGAAAGCCGCGTAC
CACAAGGACGTGGACGTGTTTTTCCAGGAGAATGCGTGGGCGGACCAAAA
GTTCTGCATGGAGTGGGCCAAGAGGTCGTACCGCGAAGGCCTGATCCGCG
GGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTGATAATGGACAACTTG
CACGCGCAGACCACGGACGATGTCAAGGGGTATCTTGCGAAGCAGTGCAA
CACTATCGCCTGGCTTGGCCCTGCCGAGTGCACGGACGAGGTGCAGCCAG
TTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTTGGTAACGAGATG
GACAAGTGGCTCGATCAGTCGGACAACATCGAGAGGTGGGAAACCGCGTC
GCTGACAGCATCTGACCGGCGCGTACTGATCACTCAATGGACGGGAGCGG
CCGTGGCAAAACTCAACAGCAATCAGGGGTACCGACACCGCCTTTTCGAA
AAGTGCGGGATGGCGATGACCGTGGACGGCTCAGGCGATGATCGAATCAC
CTTGGAGGGTTTGGACCAGCCGTACACCTTCCCAAACGATGACGACTCCA
GCGAGAACGAAGGAGGATCGGAGGACGGCAGCGATGGGCCCGAGGGGCGG
GAGGAGGAGGGCGCCGGAAGGCGCGAGCCGGTCGTCGGGGATGAGCGCAA
CGGTGCCAACAGCGGGGAGGGCATGGAGGGCGCTGGATACAGCGATGAAG
ACGACGACAACATGTCTCAATCCCAGACCGACGCGCTAGCTCTTTTGGAC
GAGGACGACAGCATGGACCCAGACGACCCGGAGGACGAGACGCAGGGAAT
GGAGATCCCGGCGGGCTTTCCGCCTTCAAGAATCTACCTCCGCTGCTCTT
GACAGATTTCTTTTGCAACGTGGAGTGTTTGTTCGGCTGGGCATGGGGTG
GTTCGGTGGGTTGATCATTCAGCAATCTCCGCAGCGCCACCTGTACGACT
ACTATGTGCAGCTGGAAGTAGGCCACAGTACGCGCAATATGAAGCTGCCC
TTAGACAAGTACAGCGGAGATCCGGACGCGGCGGTAGGCTCATGGGTTTT
GCTTGAGAGCGTCAGTAGGGCGGGAAGGGTACGCACCCCCAACGTCACTC
TTGTGTCACCAAGACGGTTGACAGTTGCCCAATGGGGGGGTGTTTGCGGA
TATGAAACTCTGCGTCGAGTGCAGTTGAGTAGTGCACCAATTGAGCAGTC
GATGATGAAATAAGAACAAGAACACCGTTTCTGGAGACAACTGGACGACG
AAATATGAACTTGTGCTCGGCTTGGGGCAGCCAACAAGAAGCGAGCCTCG
CTCCAAATAAGAGGTTCTTAAGTGCGGGCCGGTTCTGTA back to topprotein sequence of EsuBft983_9a-0001 >EsuBft983_9 ID=EsuBft983_9|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=316bp
MQVIFGPGEKNMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQK
FCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDDVKGYLAKQCN
TIAWLGPAECTDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETAS
LTASDRRVLITQWTGAAVAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRIT
LEGLDQPYTFPNDDDSSENEGGSEDGSDGPEGREEEGAGRREPVVGDERN
GANSGEGMEGAGYSDEDDDNMSQSQTDALALLDEDDSMDPDDPEDETQGM
EIPAGFPPSRIYLRCS back to topmRNA from alignment at Scaffold_233:415088..416873- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft983_9a-0001 ID=EsuBft983_9a-0001|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1786bp|location=Sequence derived from alignment at Scaffold_233:415088..416873- (Ectocarpus subulatus male Bft15b)
GTACGGTCAGTTCCAGCTCTGGGAGCGTTGGAATGTGGATCAAGTGCCTT
TGCCATTCGTGAACGGGCTGATCAGCACGTGGGAGAAGACAGGCGCGTTG
CGTGTAGCCATCTCGCAGCCCTTTGCTGGCCTAGAGAAAAGGCAGTGCAC
CATGCAAGTCATCTTCGGTCCGGGTGAGAAGAATATGCGGATTTCGGTGA
TTTTCCGAGGTCAGGGGAAGCGGATTTCGCCGGTGGAGAAAGCCGCGTAC
CACAAGGACGTGGACGTGTTTTTCCAGGAGAATGCGTGGGCGGACCAAAA
GTTCTGCATGGAGTGGGCCAAGAGGTCGTACCGCGAAGGCCTGATCCGCG
GGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTGATAATGGACAACTTG
CACGCGCAGACCACGGACGATGTCAAGGGGTATCTTGCGAAGCAGTGCAA
CACTATCGCCTGGCTTGGCCCTGCCGAGTGCACGGACGAGGTGCAGCCAG
TTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTTGGTAACGAGATG
GACAAGTGGCTCGATCAGTCGGACAACATCGAGAGGTGGGAAACCGCGTC
GCTGACAGCATCTGACCGGCGCGTACTGATCACTCAATGGACGGGAGCGG
CCGTGGCAAAACTCAACAGCAATCAGGGGTACCGACACCGCCTTTTCGAA
AAGTGCGGGATGGCGATGACCGTGGACGGCTCAGGCGATGATCGAATCAC
CTTGGAGGGTTTGGACCAGCCGTACACCTTCCCAAACGATGACGACTCCA
GCGAGAACGAAGGAGGATCGGAGGACGGCAGCGATGGGCCCGAGGGGCGG
GAGGAGGAGGGCGCCGGAAGGCGCGAGCCGGTCGTCGGGGATGAGCGCAA
CGGTGCCAACAGCGGGGAGGGCATGGAGGGCGCTGGATACAGCGATGAAG
ACGACGACAGTAAGTTTGATTGGCACTACATAGACTACAGTTAATTCATT
GTCCTTTCTGTTCATCTTTTCTTGTGCTGTTTGGGATATTGCTAATATTC
TGTTTCCGCGTCACGTCTACGAACAAATGGTGTGTTCACTTCAGTTGAGT
AACGGCGATGACACCCGTACGTTCCTTCTCGTGTTTCACGGTACCCTTCG
TCGCAGACATGTCTCAATCCCAGACCGACGCGCTAGCTCTTTTGGACGAG
GACGACAGCATGGACCCAGACGACCCGGAGGACGAGACGCAGGGAATGGA
GATCCCGGCGGGCTTTCCGCCTTCAAGAATCTACCTCCGCTGCTCTTGAC
AGATTTCTTTTGCAACGTGGAGTGTTTGTTCGGCTGGGCATGGGGTGGTT
CGGTGGGTTGATCATTCAGCAATCTCCGCAGCGCCACCTGTACGACTACT
ATGTGCAGCTGGAAGTAGGCCACAGTACGCGCAATATGAAGCTGCCCTTA
GACAAGTACAGCGGAGATCCGGACGCGGCGGTAGGCTCATGGGTTTTGCT
TGAGAGCGTCAGTAGGGCGGGAAGGGTACGCACCCCCAACGTCACTCTTG
TGTCACCAAGACGGTTGACAGTTGCCCAATGGGGGGGTGTTTGCGGATAT
GAAACTCTGCGTCGAGTGCAGTTGAGTAGTGCACCAATTGAGCAGTCGAT
GATGAAATAAGAACAAGAACACCGTTTCTGGAGACAACTGGACGACGAAA
TATGAACTTGTGCTCGGCTTGGGGCAGCCAACAAGAAGCGAGCCTCGCTC
CAAATAAGAGGTTCTTAAGTGCGGGCCGGTTCTGTA back to topCoding sequence (CDS) from alignment at Scaffold_233:415088..416873- >EsuBft983_9a-0001 ID=EsuBft983_9a-0001|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=951bp|location=Sequence derived from alignment at Scaffold_233:415088..416873- (Ectocarpus subulatus male Bft15b)
ATGCAAGTCATCTTCGGTCCGGGTGAGAAGAATATGCGGATTTCGGTGAT
TTTCCGAGGTCAGGGGAAGCGGATTTCGCCGGTGGAGAAAGCCGCGTACC
ACAAGGACGTGGACGTGTTTTTCCAGGAGAATGCGTGGGCGGACCAAAAG
TTCTGCATGGAGTGGGCCAAGAGGTCGTACCGCGAAGGCCTGATCCGCGG
GCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTGATAATGGACAACTTGC
ACGCGCAGACCACGGACGATGTCAAGGGGTATCTTGCGAAGCAGTGCAAC
ACTATCGCCTGGCTTGGCCCTGCCGAGTGCACGGACGAGGTGCAGCCAGT
TGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTTGGTAACGAGATGG
ACAAGTGGCTCGATCAGTCGGACAACATCGAGAGGTGGGAAACCGCGTCG
CTGACAGCATCTGACCGGCGCGTACTGATCACTCAATGGACGGGAGCGGC
CGTGGCAAAACTCAACAGCAATCAGGGGTACCGACACCGCCTTTTCGAAA
AGTGCGGGATGGCGATGACCGTGGACGGCTCAGGCGATGATCGAATCACC
TTGGAGGGTTTGGACCAGCCGTACACCTTCCCAAACGATGACGACTCCAG
CGAGAACGAAGGAGGATCGGAGGACGGCAGCGATGGGCCCGAGGGGCGGG
AGGAGGAGGGCGCCGGAAGGCGCGAGCCGGTCGTCGGGGATGAGCGCAAC
GGTGCCAACAGCGGGGAGGGCATGGAGGGCGCTGGATACAGCGATGAAGA
CGACGACAACATGTCTCAATCCCAGACCGACGCGCTAGCTCTTTTGGACG
AGGACGACAGCATGGACCCAGACGACCCGGAGGACGAGACGCAGGGAATG
GAGATCCCGGCGGGCTTTCCGCCTTCAAGAATCTACCTCCGCTGCTCTTG
A back to top
|