EsuBft983_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft983_9a-0001
Unique NameEsuBft983_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_233contigScaffold_233:415088..416873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FI08
ProteomeIdEsuBft983_9
Protein domainsPTHR19303
Protein domainsIPR004875
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length158
Hectar predicted targeting categoryother localisation
Evalue5.04e-203
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft983_9aEsuBft983_9aEctocarpus subulatus male Bft15bgeneScaffold_233 415088..416873 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_9a-0001-exonEsuBft983_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_233 415088..415717 -
EsuBft983_9a-0001-exonagat-exon-1552Ectocarpus subulatus male Bft15bexonScaffold_233 415915..416873 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_9a-0001-exonagat-three_prime_utr-23777Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_233 415088..415574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_9a-0001-cdsEsuBft983_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_233 415575..415717 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_9a-0001-exonagat-five_prime_utr-15494Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_233 416723..416873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft983_9a-0001EsuBft983_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_233 415575..416722 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft983_9a-0001 ID=EsuBft983_9a-0001|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1589bp|location=Sequence derived from alignment at Scaffold_233:415088..416873- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTACGGTCAGTTCCAGCTCTGGGAGCGTTGGAATGTGGATCAAGTGCCTT
TGCCATTCGTGAACGGGCTGATCAGCACGTGGGAGAAGACAGGCGCGTTG
CGTGTAGCCATCTCGCAGCCCTTTGCTGGCCTAGAGAAAAGGCAGTGCAC
CATGCAAGTCATCTTCGGTCCGGGTGAGAAGAATATGCGGATTTCGGTGA
TTTTCCGAGGTCAGGGGAAGCGGATTTCGCCGGTGGAGAAAGCCGCGTAC
CACAAGGACGTGGACGTGTTTTTCCAGGAGAATGCGTGGGCGGACCAAAA
GTTCTGCATGGAGTGGGCCAAGAGGTCGTACCGCGAAGGCCTGATCCGCG
GGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTGATAATGGACAACTTG
CACGCGCAGACCACGGACGATGTCAAGGGGTATCTTGCGAAGCAGTGCAA
CACTATCGCCTGGCTTGGCCCTGCCGAGTGCACGGACGAGGTGCAGCCAG
TTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTTGGTAACGAGATG
GACAAGTGGCTCGATCAGTCGGACAACATCGAGAGGTGGGAAACCGCGTC
GCTGACAGCATCTGACCGGCGCGTACTGATCACTCAATGGACGGGAGCGG
CCGTGGCAAAACTCAACAGCAATCAGGGGTACCGACACCGCCTTTTCGAA
AAGTGCGGGATGGCGATGACCGTGGACGGCTCAGGCGATGATCGAATCAC
CTTGGAGGGTTTGGACCAGCCGTACACCTTCCCAAACGATGACGACTCCA
GCGAGAACGAAGGAGGATCGGAGGACGGCAGCGATGGGCCCGAGGGGCGG
GAGGAGGAGGGCGCCGGAAGGCGCGAGCCGGTCGTCGGGGATGAGCGCAA
CGGTGCCAACAGCGGGGAGGGCATGGAGGGCGCTGGATACAGCGATGAAG
ACGACGACAACATGTCTCAATCCCAGACCGACGCGCTAGCTCTTTTGGAC
GAGGACGACAGCATGGACCCAGACGACCCGGAGGACGAGACGCAGGGAAT
GGAGATCCCGGCGGGCTTTCCGCCTTCAAGAATCTACCTCCGCTGCTCTT
GACAGATTTCTTTTGCAACGTGGAGTGTTTGTTCGGCTGGGCATGGGGTG
GTTCGGTGGGTTGATCATTCAGCAATCTCCGCAGCGCCACCTGTACGACT
ACTATGTGCAGCTGGAAGTAGGCCACAGTACGCGCAATATGAAGCTGCCC
TTAGACAAGTACAGCGGAGATCCGGACGCGGCGGTAGGCTCATGGGTTTT
GCTTGAGAGCGTCAGTAGGGCGGGAAGGGTACGCACCCCCAACGTCACTC
TTGTGTCACCAAGACGGTTGACAGTTGCCCAATGGGGGGGTGTTTGCGGA
TATGAAACTCTGCGTCGAGTGCAGTTGAGTAGTGCACCAATTGAGCAGTC
GATGATGAAATAAGAACAAGAACACCGTTTCTGGAGACAACTGGACGACG
AAATATGAACTTGTGCTCGGCTTGGGGCAGCCAACAAGAAGCGAGCCTCG
CTCCAAATAAGAGGTTCTTAAGTGCGGGCCGGTTCTGTA
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protein sequence of EsuBft983_9a-0001

>EsuBft983_9 ID=EsuBft983_9|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=316bp
MQVIFGPGEKNMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQK
FCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDDVKGYLAKQCN
TIAWLGPAECTDEVQPVDAGAGRFLKVEVGNEMDKWLDQSDNIERWETAS
LTASDRRVLITQWTGAAVAKLNSNQGYRHRLFEKCGMAMTVDGSGDDRIT
LEGLDQPYTFPNDDDSSENEGGSEDGSDGPEGREEEGAGRREPVVGDERN
GANSGEGMEGAGYSDEDDDNMSQSQTDALALLDEDDSMDPDDPEDETQGM
EIPAGFPPSRIYLRCS
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mRNA from alignment at Scaffold_233:415088..416873-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft983_9a-0001 ID=EsuBft983_9a-0001|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1786bp|location=Sequence derived from alignment at Scaffold_233:415088..416873- (Ectocarpus subulatus male Bft15b)
GTACGGTCAGTTCCAGCTCTGGGAGCGTTGGAATGTGGATCAAGTGCCTT
TGCCATTCGTGAACGGGCTGATCAGCACGTGGGAGAAGACAGGCGCGTTG
CGTGTAGCCATCTCGCAGCCCTTTGCTGGCCTAGAGAAAAGGCAGTGCAC
CATGCAAGTCATCTTCGGTCCGGGTGAGAAGAATATGCGGATTTCGGTGA
TTTTCCGAGGTCAGGGGAAGCGGATTTCGCCGGTGGAGAAAGCCGCGTAC
CACAAGGACGTGGACGTGTTTTTCCAGGAGAATGCGTGGGCGGACCAAAA
GTTCTGCATGGAGTGGGCCAAGAGGTCGTACCGCGAAGGCCTGATCCGCG
GGCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTGATAATGGACAACTTG
CACGCGCAGACCACGGACGATGTCAAGGGGTATCTTGCGAAGCAGTGCAA
CACTATCGCCTGGCTTGGCCCTGCCGAGTGCACGGACGAGGTGCAGCCAG
TTGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTTGGTAACGAGATG
GACAAGTGGCTCGATCAGTCGGACAACATCGAGAGGTGGGAAACCGCGTC
GCTGACAGCATCTGACCGGCGCGTACTGATCACTCAATGGACGGGAGCGG
CCGTGGCAAAACTCAACAGCAATCAGGGGTACCGACACCGCCTTTTCGAA
AAGTGCGGGATGGCGATGACCGTGGACGGCTCAGGCGATGATCGAATCAC
CTTGGAGGGTTTGGACCAGCCGTACACCTTCCCAAACGATGACGACTCCA
GCGAGAACGAAGGAGGATCGGAGGACGGCAGCGATGGGCCCGAGGGGCGG
GAGGAGGAGGGCGCCGGAAGGCGCGAGCCGGTCGTCGGGGATGAGCGCAA
CGGTGCCAACAGCGGGGAGGGCATGGAGGGCGCTGGATACAGCGATGAAG
ACGACGACAGTAAGTTTGATTGGCACTACATAGACTACAGTTAATTCATT
GTCCTTTCTGTTCATCTTTTCTTGTGCTGTTTGGGATATTGCTAATATTC
TGTTTCCGCGTCACGTCTACGAACAAATGGTGTGTTCACTTCAGTTGAGT
AACGGCGATGACACCCGTACGTTCCTTCTCGTGTTTCACGGTACCCTTCG
TCGCAGACATGTCTCAATCCCAGACCGACGCGCTAGCTCTTTTGGACGAG
GACGACAGCATGGACCCAGACGACCCGGAGGACGAGACGCAGGGAATGGA
GATCCCGGCGGGCTTTCCGCCTTCAAGAATCTACCTCCGCTGCTCTTGAC
AGATTTCTTTTGCAACGTGGAGTGTTTGTTCGGCTGGGCATGGGGTGGTT
CGGTGGGTTGATCATTCAGCAATCTCCGCAGCGCCACCTGTACGACTACT
ATGTGCAGCTGGAAGTAGGCCACAGTACGCGCAATATGAAGCTGCCCTTA
GACAAGTACAGCGGAGATCCGGACGCGGCGGTAGGCTCATGGGTTTTGCT
TGAGAGCGTCAGTAGGGCGGGAAGGGTACGCACCCCCAACGTCACTCTTG
TGTCACCAAGACGGTTGACAGTTGCCCAATGGGGGGGTGTTTGCGGATAT
GAAACTCTGCGTCGAGTGCAGTTGAGTAGTGCACCAATTGAGCAGTCGAT
GATGAAATAAGAACAAGAACACCGTTTCTGGAGACAACTGGACGACGAAA
TATGAACTTGTGCTCGGCTTGGGGCAGCCAACAAGAAGCGAGCCTCGCTC
CAAATAAGAGGTTCTTAAGTGCGGGCCGGTTCTGTA
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Coding sequence (CDS) from alignment at Scaffold_233:415088..416873-

>EsuBft983_9a-0001 ID=EsuBft983_9a-0001|Name=EsuBft983_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=951bp|location=Sequence derived from alignment at Scaffold_233:415088..416873- (Ectocarpus subulatus male Bft15b)
ATGCAAGTCATCTTCGGTCCGGGTGAGAAGAATATGCGGATTTCGGTGAT
TTTCCGAGGTCAGGGGAAGCGGATTTCGCCGGTGGAGAAAGCCGCGTACC
ACAAGGACGTGGACGTGTTTTTCCAGGAGAATGCGTGGGCGGACCAAAAG
TTCTGCATGGAGTGGGCCAAGAGGTCGTACCGCGAAGGCCTGATCCGCGG
GCGGGGTGAGCTCCCCAAGGCGAGGTCCATTCTGATAATGGACAACTTGC
ACGCGCAGACCACGGACGATGTCAAGGGGTATCTTGCGAAGCAGTGCAAC
ACTATCGCCTGGCTTGGCCCTGCCGAGTGCACGGACGAGGTGCAGCCAGT
TGATGCAGGAGCCGGACGATTTCTCAAGGTGGAAGTTGGTAACGAGATGG
ACAAGTGGCTCGATCAGTCGGACAACATCGAGAGGTGGGAAACCGCGTCG
CTGACAGCATCTGACCGGCGCGTACTGATCACTCAATGGACGGGAGCGGC
CGTGGCAAAACTCAACAGCAATCAGGGGTACCGACACCGCCTTTTCGAAA
AGTGCGGGATGGCGATGACCGTGGACGGCTCAGGCGATGATCGAATCACC
TTGGAGGGTTTGGACCAGCCGTACACCTTCCCAAACGATGACGACTCCAG
CGAGAACGAAGGAGGATCGGAGGACGGCAGCGATGGGCCCGAGGGGCGGG
AGGAGGAGGGCGCCGGAAGGCGCGAGCCGGTCGTCGGGGATGAGCGCAAC
GGTGCCAACAGCGGGGAGGGCATGGAGGGCGCTGGATACAGCGATGAAGA
CGACGACAACATGTCTCAATCCCAGACCGACGCGCTAGCTCTTTTGGACG
AGGACGACAGCATGGACCCAGACGACCCGGAGGACGAGACGCAGGGAATG
GAGATCCCGGCGGGCTTTCCGCCTTCAAGAATCTACCTCCGCTGCTCTTG
A
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