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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7897.ENSLACP00000005771 |
| ProteomeId | EsuBft983_8 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | PTHR19446 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 33208|Metazoa |
| Length | 133 |
| Evalue | 2.75e-18 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BHR3@33208|Metazoa,3CUIP@33213|Bilateria,48QQZ@7711|Chordata,49MAN@7742|Vertebrata |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft983_8a-0001 ID=EsuBft983_8a-0001|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1330bp|location=Sequence derived from alignment at Scaffold_233:412739..414923- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGAAGCGCAGCACGAGGTCTCCGAAGCGTCGAAAGAGATTAAGGCGGCCC
AGCAGTAACTAACTAACAACGTGGGGGCCTCAAAGAACAGCACCTTCGAG
GCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCG
AGAAGAAGAGCCGCGAGGGGGATCAGGCGGGCTTCTACAGACAGGCACCT
CAAGATGATCGACGTCGAAGGTCCTTTGGGACGTTTTTTCGCCAACGGTG
GGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACC
TGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGAC
GACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGCAAATGGCCAA
CAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTT
TCCTGGACGGAGATCAAGGTCTCCTNGCCAACAGGAAGGCCGTCGGGCCG
GACGACCTACCGGCTGAGCTGATCAAACTTTTCCTGGACGGAGATCAACT
NCCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGAAAGGCCGTCG
GGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGAT
CAAGGTCTCCTCCGCGAGTTCCACGCCATTGTCGTGGACGTGTGGCAGAC
TGGGGACGTACCACAGCAGTGGAAGGATGCCACCATCAAAGTTCTGTTCA
AGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTC
GCACACGCCGGCAAGATGCTGGTGTTCATTCGCCACTTCCACATNCCGAA
GATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCC
GAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTC
CGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACATGTTCTTTGCCGC
GATACTCATGGTCGCCGTGGGCGAGTTCGACAAGGACCCCAAGGTGACGG
CGGAAATGGTCAAGATCGGGAAACAAGTGGAGTACACGGGCAAGAAGGGC
AGGTCGGCGGAGAAGAAGACAATGATGGTGGTGACGGACTCGGAGGCCCT
GTGGGCCATGCTCTACGTTGACGACGCGGCCATCATCTCGAGCTCGCCGG
AGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTC
GGACTGATGGTATCGGAGCCAAAGACCTAG back to topprotein sequence of EsuBft983_8a-0001 >EsuBft983_8 ID=EsuBft983_8|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=404bp
MLKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRQAPQDDRR
RRSFGTFFRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSL
LEVEEAVRQMANRKAVGPDDLPAELIKLFLDGDQGLLANRKAVGPDDLPA
ELIKLFLDGDQLPSRRPSTCMRLTRKAVGPDDLPAELIKLFLDGDQGLLR
EFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRGISLVAHAGK
MLVFIRHFHXPKMLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCN
LAPLLFNMFFAAILMVAVGEFDKDPKVTAEMVKIGKQVEYTGKKGRSAEK
KTMMVVTDSEALWAMLYVDDAAIISSSPESLEKMMSVIVRVAGLFGLMVS
EPKT back to topmRNA from alignment at Scaffold_233:412739..414923- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft983_8a-0001 ID=EsuBft983_8a-0001|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2185bp|location=Sequence derived from alignment at Scaffold_233:412739..414923- (Ectocarpus subulatus male Bft15b)
CGAAGCGCAGCACGAGGTCTCCGAAGCGTCGAAAGAGATTAAGGCGGCCC
AGCAGTAACTAACTAACAACGTGGGGGCCTCAAAGAACAGCACCTTCGAG
GCGACCCTGAAGGCGATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GAGGTGGAGAGCACTGGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCG
AGAAGAAGAGCCGCGAGGGGGATCAGGCGGGCTTCTACAGACAGGCACCT
CAAGATGATCGACGTCGAAGGTAAGAGGTCGTCGTTCACCTCTCAGAATA
TCAAGGACGAGGACGGCAAGGTCCTTTGGGACGTTTTTTCGCCAACGGTG
GGCACGGTGGTTCCACAAGCTTCTCAACACCAAGTCGCCGACCATCGACC
TGCATGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGAC
GACATCCCATCTCTACTTGAGGTTGAGGAAGCGGTACGGCAAATGGCCAA
CAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTT
TCCTGGACGGAGATCAAGGTCTCCTNGCCAACAGGAAGGCCGTCGGGCCG
GACGACCTACCGGCTGAGCTGATCAAACTTTTCCTGGACGGAGATCAACT
NCCAAGTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCGGTG
GCCCACGTGCGTTCCACTCGACGAAATCCCATCGCTACTTGAGGTTGAGG
AAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTA
CCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCG
CGAGTTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCAC
AGCAGTGGAAGGATGCCACCATCAAAGTTCTGTTCAAGAAGGGGGACACG
ATGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAA
GGTGCTGGTCGTCGCTACACGACTGAGCCACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNATCCTCCCGGAGGAGCAGAGCGGTTT
CCGCCCACACCGGTCGACGCTCGACATCCAGCGGCTCCATGAGCTCGCGA
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGG
TGGACCGAGACCTACTACTACTACTGTGGGACGTGCTCCGACGCTTCGGC
GTGCCCCCGAAGATAGATAGATGCTGGTGTTCATTCGCCACTTCCACATN
CCGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCG
CGTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAG
GCCTCCGACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACATGTTCTTT
GCCGCGATACTCATGGTCGCCGTGGGCGAGTTCGACAAGGACCCCAAGGT
GACGGCGGAAATGGTCAAGATCGGGAAACAAGTGGAGTACACGGGCAAGA
AGGGCAGGTCGGCGGAGAAGAAGACAATGATGGTGGTGACGGACTCGGAG
GCCCTGTGGGCCATGCTCTACGTTGACGACGCGGCCATCATCTCGAGCTC
GCCGGAGAGTCTCGAGAAGATGATGTCGGTCATCGTGCGCGTGGCCGGCC
TGTTCGGACTGATGGTATCGGAGCCAAAGACCTAG back to topCoding sequence (CDS) from alignment at Scaffold_233:412739..414923- >EsuBft983_8a-0001 ID=EsuBft983_8a-0001|Name=EsuBft983_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1215bp|location=Sequence derived from alignment at Scaffold_233:412739..414923- (Ectocarpus subulatus male Bft15b)
ATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGAGCACT
GGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCG
AGGGGGATCAGGCGGGCTTCTACAGACAGGCACCTCAAGATGATCGACGT
CGAAGGTCCTTTGGGACGTTTTTTCGCCAACGGTGGGCACGGTGGTTCCA
CAAGCTTCTCAACACCAAGTCGCCGACCATCGACCTGCATGCGGCTGACA
AGGTCAAGCGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTCTA
CTTGAGGTTGAGGAAGCGGTACGGCAAATGGCCAACAGAAAGGCCGTCGG
GCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATC
AAGGTCTCCTNGCCAACAGGAAGGCCGTCGGGCCGGACGACCTACCGGCT
GAGCTGATCAAACTTTTCCTGGACGGAGATCAACTNCCAAGTCGCCGACC
ATCGACCTGCATGCGGCTGACAAGAAAGGCCGTCGGGCCGGACGACCTAC
CGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGATCAAGGTCTCCTCCGC
GAGTTCCACGCCATTGTCGTGGACGTGTGGCAGACTGGGGACGTACCACA
GCAGTGGAAGGATGCCACCATCAAAGTTCTGTTCAAGAAGGGGGACACGA
TGGAGTGCGGCAACTACCGGGGCATCTCTCTCGTCGCACACGCCGGCAAG
ATGCTGGTGTTCATTCGCCACTTCCACATNCCGAAGATGCTGGCGGTCAT
TCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGC
AGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAAC
CTGGCCCCGCTGCTGTTCAACATGTTCTTTGCCGCGATACTCATGGTCGC
CGTGGGCGAGTTCGACAAGGACCCCAAGGTGACGGCGGAAATGGTCAAGA
TCGGGAAACAAGTGGAGTACACGGGCAAGAAGGGCAGGTCGGCGGAGAAG
AAGACAATGATGGTGGTGACGGACTCGGAGGCCCTGTGGGCCATGCTCTA
CGTTGACGACGCGGCCATCATCTCGAGCTCGCCGGAGAGTCTCGAGAAGA
TGATGTCGGTCATCGTGCGCGTGGCCGGCCTGTTCGGACTGATGGTATCG
GAGCCAAAGACCTAG back to top
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